Uses of Class
ubic.gemma.persistence.service.common.auditAndSecurity.curation.AnnotationSetService.RunProvenance

Packages that use AnnotationSetService.RunProvenance

Package	Description
ubic.gemma.persistence.service.common.auditAndSecurity.curation
ubic.gemma.persistence.service.expression.experiment

Uses of AnnotationSetService.RunProvenance in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Methods in ubic.gemma.persistence.service.common.auditAndSecurity.curation with parameters of type AnnotationSetService.RunProvenance

Modifier and Type	Method	Description
AnnotationSetService.AttachedAnnotationSet	AnnotationSetService.attach(Investigation investigation, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, AnnotationSetService.RunProvenance runProvenance, String payloadJson, AnnotationSet parent)	As AnnotationSetService.attach(Investigation, AnnotationSetRole, AnnotationSetSource, AgentCurationKind, String, String, String, String, Date, String, AnnotationSet), but carrying the full run provenance rather than the agentVersion / model / ranAt triple.
AnnotationSetService.AttachedAnnotationSet	AnnotationSetServiceImpl.attach(Investigation investigation, AnnotationSetRole role, AnnotationSetSource source, AgentCurationKind kind, String runId, String createdBy, AnnotationSetService.RunProvenance runProvenance, String payloadJson, AnnotationSet parent)
AnnotationSet	AnnotationSetService.updateProvenance(Long id, AnnotationSetService.RunProvenance provenance)	Correct the run-provenance envelope on an existing row in place, so a mis-stamped agentVersion / model / agentName / runSha / ranAt is fixed without the delete-and-recreate that mints a new id.
AnnotationSet	AnnotationSetServiceImpl.updateProvenance(Long id, AnnotationSetService.RunProvenance provenance)

Uses of AnnotationSetService.RunProvenance in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return AnnotationSetService.RunProvenance

Modifier and Type	Method	Description
AnnotationSetService.RunProvenance	CurationCommitRequest.getRunProvenance()	Which build produced the run named by CurationCommitRequest.getRunId().

Methods in ubic.gemma.persistence.service.expression.experiment with parameters of type AnnotationSetService.RunProvenance

Modifier and Type	Method	Description
void	CurationCommitRequest.setRunProvenance(AnnotationSetService.RunProvenance runProvenance)