Uses of Interface
ubic.gemma.persistence.service.common.description.AnnotationRelationDao

Packages that use AnnotationRelationDao

Package	Description
ubic.gemma.core.ontology
ubic.gemma.core.ontology.relation
ubic.gemma.persistence.service.common.description

Uses of AnnotationRelationDao in ubic.gemma.core.ontology

Methods in ubic.gemma.core.ontology with parameters of type AnnotationRelationDao

Modifier and Type	Method	Description
CellosaurusRelationProducer	OntologyConfig.cellosaurusRelationProducer(List<OntologyService> ontologies, AnnotationRelationDao annotationRelationDao, org.springframework.transaction.PlatformTransactionManager transactionManager, TaxonService taxonService)	Cellosaurus as EXTERNAL relations — donor disease and derived-from site.
ClInferredLocationProducer	OntologyConfig.clInferredLocationProducer(AnnotationRelationDao annotationRelationDao, org.springframework.transaction.PlatformTransactionManager transactionManager)	The entailed CL cell type → anatomical structure locations, from a reviewed file.
MgiRelationProducer	OntologyConfig.mgiRelationProducer(List<OntologyService> ontologies, AnnotationRelationDao annotationRelationDao, org.springframework.transaction.PlatformTransactionManager transactionManager, TaxonService taxonService)	MGI's genotype-to-disease reports as EXTERNAL relations.
OntologyRelationProducer	OntologyConfig.ontologyRelationProducer(List<OntologyService> ontologies, AnnotationRelationDao annotationRelationDao, org.springframework.transaction.PlatformTransactionManager transactionManager, TaxonService taxonService, OntologyService ontologyService)	Writes the ONTOLOGY rows of ANNOTATION_RELATION — the relations CLO and CHEBI already assert and nothing has ever read.

Uses of AnnotationRelationDao in ubic.gemma.core.ontology.relation

Constructors in ubic.gemma.core.ontology.relation with parameters of type AnnotationRelationDao

Modifier	Constructor	Description
	CellosaurusRelationProducer(List<OntologyService> ontologies, AnnotationRelationDao annotationRelationDao, org.springframework.transaction.support.TransactionTemplate transactionTemplate, TaxonService taxonService)
	ClInferredLocationProducer(AnnotationRelationDao annotationRelationDao, org.springframework.transaction.support.TransactionTemplate transactionTemplate)	🛑 Constructor-injected and declared as a @Bean in OntologyConfig, NOT a @Service.
	MgiRelationProducer(List<OntologyService> ontologies, AnnotationRelationDao annotationRelationDao, org.springframework.transaction.support.TransactionTemplate transactionTemplate, TaxonService taxonService)
	OntologyRelationProducerImpl(List<OntologyService> ontologies, AnnotationRelationDao annotationRelationDao, org.springframework.transaction.support.TransactionTemplate transactionTemplate, TaxonService taxonService, OntologyService ontologyService)

Uses of AnnotationRelationDao in ubic.gemma.persistence.service.common.description

Classes in ubic.gemma.persistence.service.common.description that implement AnnotationRelationDao

Modifier and Type	Class	Description
class	AnnotationRelationDaoImpl	Hibernate implementation of AnnotationRelationDao.

Constructors in ubic.gemma.persistence.service.common.description with parameters of type AnnotationRelationDao

Modifier	Constructor	Description
	AnnotationRelationServiceImpl(AnnotationRelationDao annotationRelationDao)