Package ubic.gemma.persistence.service.common.quantitationtype

Interface QuantitationTypeService

All Superinterfaces:

BaseImmutableService<QuantitationType>, BaseReadOnlyService<QuantitationType>, BaseService<QuantitationType>, BaseVoEnabledService<QuantitationType,QuantitationTypeValueObject>, FilteringService<QuantitationType>, FilteringVoEnabledService<QuantitationType,QuantitationTypeValueObject>

All Known Implementing Classes:

QuantitationTypeServiceImpl

public interface QuantitationTypeService
extends BaseService<QuantitationType>, FilteringVoEnabledService<QuantitationType,QuantitationTypeValueObject>

Author:

kelsey

Method Summary

Modifier and Type	Method	Description
QuantitationType	create(QuantitationType quantitationType)	Creates the given entity in the persistent storage.
boolean	existsByExpressionExperimentAndVectorType(QuantitationType quantitationType, ExpressionExperiment ee, Class<? extends DesignElementDataVector> dataVectorType)	Find a quantitation type by ID and vector type.
QuantitationType	find(ExpressionExperiment ee, QuantitationType quantitationType)	Locate a QT associated with the given ee matching the specification of the passed quantitationType, or null if there isn't one.
QuantitationType	findOrCreate(QuantitationType quantitationType)	Does a search for the entity in the persistent storage, and if not found, creates it.
List<QuantitationType>	loadByDescription(String description)
List<QuantitationTypeValueObject>	loadValueObjectsWithExpressionExperiment(Collection<QuantitationType> qts, ExpressionExperiment expressionExperiment)
void	remove(Long id)	Removes the entity with given ID from the persistent storage.
void	remove(Collection<QuantitationType> entities)	Removes all the given entities from persistent storage.
void	remove(QuantitationType quantitationType)	Removes the given entity from the persistent storage.
void	update(Collection<QuantitationType> entities)	Updates all entities in the given collection in the persistent storage.
void	update(QuantitationType quantitationType)	Updates the given entity in the persistent storage.

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail

Methods inherited from interface ubic.gemma.persistence.service.BaseService

save, save

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringService

count, getFilter, getFilter, getFilter, getFilter, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyConfigAttributes, getFilterablePropertyDescription, getFilterablePropertyIsUsingSubquery, getFilterablePropertyResolvableAllowedValuesLabels, getFilterablePropertyType, getIdentifierPropertyName, getSort, load, load, loadIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringVoEnabledService

loadValueObjects, loadValueObjects

Method Detail

find

@Secured("GROUP_USER")
QuantitationType find(ExpressionExperiment ee,
                      QuantitationType quantitationType)

Locate a QT associated with the given ee matching the specification of the passed quantitationType, or null if there isn't one.

Returns:

found QT

existsByExpressionExperimentAndVectorType

boolean existsByExpressionExperimentAndVectorType(QuantitationType quantitationType,
                                                  ExpressionExperiment ee,
                                                  Class<? extends DesignElementDataVector> dataVectorType)

Find a quantitation type by ID and vector type.

While the QT can be retrieved uniquely by ID, the purpose of this method is to ensure that it also belongs to a given expression experiment and data vector type.

findOrCreate

@Secured("GROUP_USER")
QuantitationType findOrCreate(QuantitationType quantitationType)

Description copied from interface: BaseImmutableService

Does a search for the entity in the persistent storage, and if not found, creates it.

Specified by:

findOrCreate in interface BaseImmutableService<QuantitationType>

Parameters:

quantitationType - the entity to look for, and create if not found.

Returns:

the entity retrieved from the persistent storage, either found or created.

create

@Secured("GROUP_USER")
QuantitationType create(QuantitationType quantitationType)

Description copied from interface: BaseImmutableService

Creates the given entity in the persistent storage.

Specified by:

create in interface BaseImmutableService<QuantitationType>

Parameters:

quantitationType - the entity to be created.

Returns:

object referencing the persistent instance of the given entity.

remove

@Secured("GROUP_USER")
void remove(Collection<QuantitationType> entities)

Description copied from interface: BaseImmutableService

Removes all the given entities from persistent storage.

Specified by:

remove in interface BaseImmutableService<QuantitationType>

Parameters:

entities - the entities to be removed.

remove

@Secured("GROUP_ADMIN")
void remove(Long id)

Description copied from interface: BaseImmutableService

Removes the entity with given ID from the persistent storage.

Specified by:

remove in interface BaseImmutableService<QuantitationType>

Parameters:

id - the ID of entity to be removed.

remove

@Secured("GROUP_USER")
void remove(QuantitationType quantitationType)

Description copied from interface: BaseImmutableService

Removes the given entity from the persistent storage.

Specified by:

remove in interface BaseImmutableService<QuantitationType>

Parameters:

quantitationType - the entity to be removed.

update

@Secured("GROUP_USER")
void update(Collection<QuantitationType> entities)

Description copied from interface: BaseService

Updates all entities in the given collection in the persistent storage.

Specified by:

update in interface BaseService<QuantitationType>

Parameters:

entities - the entities to be updated.

update

@Secured("GROUP_USER")
void update(QuantitationType quantitationType)

Description copied from interface: BaseService

Updates the given entity in the persistent storage.

Specified by:

update in interface BaseService<QuantitationType>

Parameters:

quantitationType - the entity to be updated.

loadByDescription

@Secured("GROUP_USER")
List<QuantitationType> loadByDescription(String description)

loadValueObjectsWithExpressionExperiment

List<QuantitationTypeValueObject> loadValueObjectsWithExpressionExperiment(Collection<QuantitationType> qts,
                                                                           ExpressionExperiment expressionExperiment)