Package ubic.gemma.persistence.service.expression.bioAssayData

Class BioAssayDimensionDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<BioAssayDimension>

ubic.gemma.persistence.service.AbstractVoEnabledDao<BioAssayDimension,BioAssayDimensionValueObject>

ubic.gemma.persistence.service.expression.bioAssayData.BioAssayDimensionDaoImpl

All Implemented Interfaces:

BaseDao<BioAssayDimension>, BaseVoEnabledDao<BioAssayDimension,BioAssayDimensionValueObject>, BioAssayDimensionDao

@Repository
public class BioAssayDimensionDaoImpl
extends AbstractVoEnabledDao<BioAssayDimension,BioAssayDimensionValueObject>
implements BioAssayDimensionDao

Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.expression.bioAssayData.BioAssayDimension.

See Also:

• BioAssayDimension

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao

REPORT_SLOW_QUERY_AFTER_MS

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

log

Constructor Summary

Constructors

Constructor	Description
BioAssayDimensionDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method	Description
protected BioAssayDimensionValueObject	doLoadValueObject(BioAssayDimension entity)	Load a value object for a given entity.
BioAssayDimension	find(BioAssayDimension bioAssayDimension)	Find a BioAssayDimension with the exact same list of BioAssays, name and description.
Collection<BioAssayDimension>	findByBioAssaysContainingAll(Collection<BioAssay> bioAssays)	Find all the dimensions that contains all the given assays.

Methods inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao

doLoadValueObjects, loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds, postProcessValueObjects

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getIdentifierPropertyName, getSessionFactory, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, streamQuery, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Constructor Details

BioAssayDimensionDaoImpl

@Autowired
public BioAssayDimensionDaoImpl(SessionFactory sessionFactory)

Method Details

find

public BioAssayDimension find(BioAssayDimension bioAssayDimension)

Find a BioAssayDimension with the exact same list of BioAssays, name and description.

Specified by:

find in interface BaseDao<BioAssayDimension>

Overrides:

find in class AbstractDao<BioAssayDimension>

Parameters:

bioAssayDimension - the entity to look for.

Returns:

an entity that was found in the persistent storage, or null if no such entity was found.

findByBioAssaysContainingAll

public Collection<BioAssayDimension> findByBioAssaysContainingAll(Collection<BioAssay> bioAssays)

Description copied from interface: BioAssayDimensionDao

Find all the dimensions that contains all the given assays.

Note: the dimension might contain more assays than the given ones.

Specified by:

findByBioAssaysContainingAll in interface BioAssayDimensionDao

doLoadValueObject

protected BioAssayDimensionValueObject doLoadValueObject(BioAssayDimension entity)

Description copied from class: AbstractVoEnabledDao

Load a value object for a given entity.

This should be fast and efficient, and avoid any database query or post-processing. If you need to perform additional queries, implement AbstractVoEnabledDao.postProcessValueObjects(List) instead.

Specified by:

doLoadValueObject in class AbstractVoEnabledDao<BioAssayDimension,BioAssayDimensionValueObject>