Package ubic.gemma.persistence.service.expression.biomaterial

Class BioMaterialUtils

java.lang.Object

ubic.gemma.persistence.service.expression.biomaterial.BioMaterialUtils

public class BioMaterialUtils
extends Object

Constructor Summary

Constructors

Constructor	Description
BioMaterialUtils()

Method Summary

Modifier and Type	Method	Description
static Map<Category,Map<BioMaterial,Collection<Characteristic>>>	createCharacteristicMap(Collection<BioMaterial> samples)	Create a mapping of biomaterial to characteristics for each category.
static void	visitBioMaterials(BioMaterial bioMaterial, Consumer<BioMaterial> visitor)	Visit all the biomaterials in the hierarchy.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BioMaterialUtils

public BioMaterialUtils()

Method Details

visitBioMaterials

public static void visitBioMaterials(BioMaterial bioMaterial,
 Consumer<BioMaterial> visitor)

Visit all the biomaterials in the hierarchy.

Circular biomaterial are not allowed, but if they happen we must detect them to prevent stack overflows.

Throws:

IllegalStateException - if a circular biomaterial is detected

createCharacteristicMap

public static Map<Category,Map<BioMaterial,Collection<Characteristic>>> createCharacteristicMap(Collection<BioMaterial> samples)

Create a mapping of biomaterial to characteristics for each category.