Package ubic.gemma.persistence.service.genome.taxon

Interface TaxonDao

All Superinterfaces:

BaseDao<Taxon>, BaseVoEnabledDao<Taxon,TaxonValueObject>, FilteringDao<Taxon>, FilteringVoEnabledDao<Taxon,TaxonValueObject>

All Known Implementing Classes:

TaxonDaoImpl

public interface TaxonDao
extends FilteringVoEnabledDao<Taxon,TaxonValueObject>

See Also:

• Taxon

Field Summary

Fields

Modifier and Type	Field	Description
static final String	OBJECT_ALIAS

Method Summary

Modifier and Type	Method	Description
Taxon	findByCommonName(String commonName)
Taxon	findByNcbiId(Integer ncbiId)
Taxon	findByScientificName(String scientificName)	Searches for a taxon by its scientific name, case insensitive.

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringDao

count, getFilter, getFilter, getFilter, getFilter, getFilter, getFilter, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyDescription, getFilterablePropertyIsUsingSubquery, getFilterablePropertyType, getSort, load, load, loadIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringVoEnabledDao

loadValueObjects, loadValueObjects

Field Details

OBJECT_ALIAS

static final String OBJECT_ALIAS

See Also:

• Constant Field Values

Method Details

findByCommonName

Taxon findByCommonName(String commonName)

findByScientificName

Taxon findByScientificName(String scientificName)

Searches for a taxon by its scientific name, case insensitive.

Parameters:

scientificName - the scientific name to be matched

Returns:

a Taxon whose scientific name matches the given string.

findByNcbiId

Taxon findByNcbiId(Integer ncbiId)