Package ubic.gemma.persistence.util

Class ChannelUtils

java.lang.Object
ubic.gemma.persistence.util.ChannelUtils
public class ChannelUtils extends Object
Determine if a quantitation type (by name) represents background or signal. This includes a variety of cases, some of them 'special'.
Author:
paul

  • Constructor Summary

    Constructors
    Constructor
    Description
    ChannelUtils()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    static boolean
    isBackgroundChannelA(String name)
    For two-color arrays: Given the quantitation type name, determine if it represents the channel A background.
    static boolean
    isBackgroundChannelB(String name)
    For two-color arrays: Given the quantitation type name, determine if it represents the channel B background.
    static boolean
    isSignalChannelA(String name)
    For two-color arrays: Given the quantitation type name, determine if it represents the channel A signal.
    static boolean
    isSignalChannelB(String name)
    For two-color arrays: Given the quantitation type name, determine if it represents the channel B signal.

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Constructor Details

    • ChannelUtils

      public ChannelUtils()

  • Method Details

    • isBackgroundChannelA

      public static boolean isBackgroundChannelA(String name)
      For two-color arrays: Given the quantitation type name, determine if it represents the channel A background.
      Parameters:
      name - name
      Returns:
      boolean

    • isBackgroundChannelB

      public static boolean isBackgroundChannelB(String name)
      For two-color arrays: Given the quantitation type name, determine if it represents the channel B background.
      Parameters:
      name - name
      Returns:
      boolean

    • isSignalChannelA

      public static boolean isSignalChannelA(String name)
      For two-color arrays: Given the quantitation type name, determine if it represents the channel A signal. (by convention, green)
      Parameters:
      name - name
      Returns:
      boolean

    • isSignalChannelB

      public static boolean isSignalChannelB(String name)
      For two-color arrays: Given the quantitation type name, determine if it represents the channel B signal. (by convention, red)
      Parameters:
      name - name
      Returns:
      boolean