Package ubic.gemma.web.controller.expression.arrayDesign

Class ArrayDesignValueObjectExt

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<ArrayDesign>

ubic.gemma.model.common.auditAndSecurity.curation.AbstractCuratableValueObject<ArrayDesign>

ubic.gemma.model.expression.arrayDesign.ArrayDesignValueObject

ubic.gemma.web.controller.expression.arrayDesign.ArrayDesignValueObjectExt

All Implemented Interfaces:

Serializable, Versioned, Identifiable

public class ArrayDesignValueObjectExt
extends ArrayDesignValueObject

Extended value object to carry more data to client.

Author:

paul

See Also:

• Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
ArrayDesignValueObjectExt(ArrayDesignValueObject vo)

Method Summary

Modifier and Type	Method	Description
Set<String>	getAdditionalTaxa()
String	getAllParentsAnnotationLink()
Collection<String>	getAlternateNames()
ArrayDesignValueObject	getAlternative()
String	getBioProcessAnnotationLink()
String	getColorString()
Collection<ArrayDesignValueObject>	getMergees()
ArrayDesignValueObject	getMerger()
String	getNoParentsAnnotationLink()
Collection<ArrayDesignValueObject>	getSubsumees()
ArrayDesignValueObject	getSubsumer()
void	setAdditionalTaxa(Collection<Taxon> t)	Method to format taxon list for display.
void	setAdditionalTaxa(Set<String> additionalTaxa)
void	setAllParentsAnnotationLink(String allParentsAnnotationLink)
void	setAlternateNames(Collection<String> alternateNames)
void	setAlternative(ArrayDesignValueObject alternative)
void	setBioProcessAnnotationLink(String bioProcessAnnotationLink)
void	setColorString(String colorString)
void	setMergees(Collection<ArrayDesignValueObject> mergees)
void	setMerger(ArrayDesignValueObject arrayDesignValueObject)
void	setNoParentsAnnotationLink(String noParentsAnnotationLink)
void	setSubsumees(Collection<ArrayDesignValueObject> subsumees)
void	setSubsumer(ArrayDesignValueObject arrayDesignValueObject)

Methods inherited from class ubic.gemma.model.expression.arrayDesign.ArrayDesignValueObject

canEqual, create, equals, getBlackListed, getColor, getCreateDate, getDateCached, getDescription, getDesignElementCount, getExpressionExperimentCount, getExternalReferences, getHasBlatAssociations, getHasGeneAssociations, getHasSequenceAssociations, getIsAffymetrixAltCdf, getIsMerged, getIsMergee, getIsSubsumed, getIsSubsumer, getLastGeneMapping, getLastRepeatMask, getLastSequenceAnalysis, getLastSequenceUpdate, getName, getNumberOfExpressionExperiments, getNumGenes, getNumProbeAlignments, getNumProbeSequences, getNumProbesToGenes, getReleaseUrl, getReleaseVersion, getShortName, getSwitchedExpressionExperimentCount, getTaxon, getTaxonID, getTaxonObject, getTechnologyType, hashCode, setBlackListed, setColor, setCreateDate, setDateCached, setDescription, setDesignElementCount, setExpressionExperimentCount, setExternalReferences, setHasBlatAssociations, setHasGeneAssociations, setHasSequenceAssociations, setIsAffymetrixAltCdf, setIsMerged, setIsMergee, setIsSubsumed, setIsSubsumer, setLastGeneMapping, setLastRepeatMask, setLastSequenceAnalysis, setLastSequenceUpdate, setName, setNumGenes, setNumProbeAlignments, setNumProbeSequences, setNumProbesToGenes, setReleaseUrl, setReleaseVersion, setShortName, setSwitchedExpressionExperimentCount, setTaxonObject, setTechnologyType, toString

Methods inherited from class ubic.gemma.model.common.auditAndSecurity.curation.AbstractCuratableValueObject

getCurationNote, getLastNeedsAttentionEvent, getLastNoteUpdateEvent, getLastTroubledEvent, getLastUpdated, getNeedsAttention, getTroubled, getTroubleDetails, getTroubleDetails, setCurationNote, setLastNeedsAttentionEvent, setLastNoteUpdateEvent, setLastTroubledEvent, setLastUpdated, setNeedsAttention, setTroubled

Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject

getId, setId

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.model.common.description.Versioned

getLastUpdated

Constructor Details

ArrayDesignValueObjectExt

public ArrayDesignValueObjectExt(ArrayDesignValueObject vo)

Method Details

getAdditionalTaxa

public Set<String> getAdditionalTaxa()

setAdditionalTaxa

public void setAdditionalTaxa(Set<String> additionalTaxa)

getAllParentsAnnotationLink

public String getAllParentsAnnotationLink()

getAlternateNames

public Collection<String> getAlternateNames()

getAlternative

public ArrayDesignValueObject getAlternative()

getBioProcessAnnotationLink

public String getBioProcessAnnotationLink()

getColorString

public String getColorString()

getMergees

public Collection<ArrayDesignValueObject> getMergees()

getMerger

public ArrayDesignValueObject getMerger()

getNoParentsAnnotationLink

public String getNoParentsAnnotationLink()

getSubsumees

public Collection<ArrayDesignValueObject> getSubsumees()

getSubsumer

public ArrayDesignValueObject getSubsumer()

setAdditionalTaxa

public void setAdditionalTaxa(Collection<Taxon> t)

Method to format taxon list for display.

Parameters:

t - Collection of taxon used to create array/platform

setAllParentsAnnotationLink

public void setAllParentsAnnotationLink(String allParentsAnnotationLink)

setAlternateNames

public void setAlternateNames(Collection<String> alternateNames)

setAlternative

public void setAlternative(ArrayDesignValueObject alternative)

setBioProcessAnnotationLink

public void setBioProcessAnnotationLink(String bioProcessAnnotationLink)

setColorString

public void setColorString(String colorString)

setMergees

public void setMergees(Collection<ArrayDesignValueObject> mergees)

setMerger

public void setMerger(ArrayDesignValueObject arrayDesignValueObject)

setNoParentsAnnotationLink

public void setNoParentsAnnotationLink(String noParentsAnnotationLink)

setSubsumees

public void setSubsumees(Collection<ArrayDesignValueObject> subsumees)

setSubsumer

public void setSubsumer(ArrayDesignValueObject arrayDesignValueObject)