Package ubic.gemma.web.controller.expression.experiment

Class DesignMatrixRowValueObject.Factory

java.lang.Object

ubic.gemma.web.controller.expression.experiment.DesignMatrixRowValueObject.Factory

Enclosing class:

DesignMatrixRowValueObject

public static final class DesignMatrixRowValueObject.Factory
extends Object

Constructor Summary

Constructors

Constructor	Description
Factory()

Method Summary

Modifier and Type	Method	Description
static Collection<DesignMatrixRowValueObject>	getDesignMatrix(ExpressionExperiment expressionExperiment, boolean removeBatchFactor, boolean removeContinuous)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Factory

public Factory()

Method Detail

getDesignMatrix

public static Collection<DesignMatrixRowValueObject> getDesignMatrix(ExpressionExperiment expressionExperiment,
                                                                     boolean removeBatchFactor,
                                                                     boolean removeContinuous)

Parameters:

expressionExperiment - ee

removeBatchFactor - if true, any factor(s) that look like "batch information" will be ignored.

removeContinuous - if true, any factor(s) that are continuous will be ignored. If you don't set this to true, you will get a row for each assay.

Returns:

collection