Package ubic.gemma.web.controller.genome.gene

Class GeneController

java.lang.Object

ubic.gemma.web.controller.genome.gene.GeneController

@Controller
@RequestMapping({"/gene","/g"})
public class GeneController
extends Object

Author:

daq2101, pavlidis, joseph

Field Summary

Fields

Modifier and Type	Field	Description
protected final org.apache.commons.logging.Log	log
protected org.springframework.context.MessageSource	messageSource
protected MessageUtil	messageUtil

Constructor Summary

Constructors

Constructor	Description
GeneController()

Method Summary

Modifier and Type	Method	Description
void	downloadGeneList(String geneIdsStr, String geneSetIdsStr, javax.servlet.http.HttpServletResponse response)
Collection<AnnotationValueObject>	findGOTerms(Long geneId)
Collection<GeneProductValueObject>	getProducts(Long geneId)
GeneValueObject	loadGeneDetails(Long geneId)
org.springframework.web.servlet.ModelAndView	show(Long id, Integer ncbiId, String geneName, String taxonName, String ensemblId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

log

protected final org.apache.commons.logging.Log log

messageSource

@Autowired
protected org.springframework.context.MessageSource messageSource

messageUtil

@Autowired
protected MessageUtil messageUtil

Constructor Details

GeneController

public GeneController()

Method Details

findGOTerms

public Collection<AnnotationValueObject> findGOTerms(Long geneId)

getProducts

public Collection<GeneProductValueObject> getProducts(Long geneId)

loadGeneDetails

public GeneValueObject loadGeneDetails(Long geneId)

show

@RequestMapping(value={"/showGene.html","/"},
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView show(@RequestParam(value="id",required=false)
 Long id,
 @RequestParam(value="ncbiid",required=false)
 Integer ncbiId,
 @RequestParam(value="name",required=false)
 String geneName,
 @RequestParam(value="taxon",required=false)
 String taxonName,
 @RequestParam(value="ensemblId",required=false)
 String ensemblId)

downloadGeneList

@RequestMapping(value="/downloadGeneList.html",
                method={GET,HEAD})
public void downloadGeneList(@RequestParam(value="g",required=false) @Nullable
 String geneIdsStr,
 @RequestParam(value="gs",required=false) @Nullable
 String geneSetIdsStr,
 javax.servlet.http.HttpServletResponse response)
                      throws IOException

Throws:

IOException