Package ubic.gemma.web.controller.ontology

Class OntologyController

java.lang.Object

ubic.gemma.web.controller.ontology.OntologyController

@RequestMapping("/ont")
@Controller
public class OntologyController
extends Object

Provide minimal support for exposing Gemma ontology.

Author:

poirigui

Field Summary

Fields

Modifier and Type	Field	Description
static final String	TGEMO_URI_PREFIX
static final String	TGFVO_URI_PREFIX

Constructor Summary

Constructors

Constructor	Description
OntologyController()

Method Summary

Modifier and Type	Method	Description
org.springframework.web.servlet.ModelAndView	getFactorValue(Long factorValueId, String acceptHeader, javax.servlet.http.HttpServletResponse response)
org.springframework.web.servlet.ModelAndView	getFactorValueAnnotation(Long factorValueId, Long annotationId, String acceptHeader, javax.servlet.http.HttpServletResponse response)
void	getFactorValueOntologyAsRdf(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response, boolean download)
org.springframework.web.servlet.ModelAndView	getFactorValueOntologyHome(int offset, int limit, String acceptHeader, javax.servlet.http.HttpServletResponse response)
org.springframework.web.servlet.view.RedirectView	getGemmaOntologyAsRdf()
org.springframework.web.servlet.ModelAndView	getGemmaOntologyHome()
org.springframework.web.servlet.ModelAndView	getGemmaOntologyTerm(String termId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

TGEMO_URI_PREFIX

public static final String TGEMO_URI_PREFIX

See Also:

• Constant Field Values

TGFVO_URI_PREFIX

public static final String TGFVO_URI_PREFIX

See Also:

• Constant Field Values

Constructor Details

OntologyController

public OntologyController()

Method Details

getGemmaOntologyHome

@RequestMapping(value="/TGEMO",
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView getGemmaOntologyHome()

getGemmaOntologyAsRdf

@RequestMapping(value="/TGEMO.OWL",
                method={GET,HEAD})
public org.springframework.web.servlet.view.RedirectView getGemmaOntologyAsRdf()

getGemmaOntologyTerm

@RequestMapping(value="/{termId:TGEMO[:_].*}",
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView getGemmaOntologyTerm(@PathVariable("termId")
 String termId)

getFactorValueOntologyHome

@RequestMapping(value="/TGFVO",
                method={GET,HEAD},
                produces={"text/html","application/rdf+xml"})
public org.springframework.web.servlet.ModelAndView getFactorValueOntologyHome(@RequestParam(value="offset",defaultValue="0")
 int offset,
 @RequestParam(value="limit",defaultValue="20")
 int limit,
 @RequestHeader(value="Accept",required=false)
 String acceptHeader,
 javax.servlet.http.HttpServletResponse response)
                                                                        throws IOException

Throws:

IOException

getFactorValueOntologyAsRdf

@RequestMapping(value="/TGFVO.OWL",
                method={GET,HEAD},
                produces="application/rdf+xml")
public void getFactorValueOntologyAsRdf(javax.servlet.http.HttpServletRequest request,
 javax.servlet.http.HttpServletResponse response,
 @RequestParam(value="download",defaultValue="false")
 boolean download)
                                 throws IOException,
IOException

Throws:

IOException

getFactorValue

@RequestMapping(value="/TGFVO/{factorValueId}",
                method={GET,HEAD},
                produces={"text/html","application/rdf+xml"})
public org.springframework.web.servlet.ModelAndView getFactorValue(@PathVariable("factorValueId")
 Long factorValueId,
 @RequestHeader(value="Accept",required=false)
 String acceptHeader,
 javax.servlet.http.HttpServletResponse response)
                                                            throws IOException

Throws:

IOException

getFactorValueAnnotation

@RequestMapping(value="/TGFVO/{factorValueId}/{annotationId}",
                method={GET,HEAD},
                produces={"text/html","application/rdf+xml"})
public org.springframework.web.servlet.ModelAndView getFactorValueAnnotation(@PathVariable("factorValueId")
 Long factorValueId,
 @PathVariable("annotationId")
 Long annotationId,
 @RequestHeader(value="Accept",required=false)
 String acceptHeader,
 javax.servlet.http.HttpServletResponse response)
                                                                      throws IOException

Throws:

IOException