Package ubic.gemma.web.services

Class GeneOverlapEndpoint

java.lang.Object

org.springframework.xml.transform.TransformerObjectSupport

org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

ubic.gemma.web.services.AbstractGemmaEndpoint

ubic.gemma.web.services.GeneOverlapEndpoint

All Implemented Interfaces:

org.springframework.ws.server.endpoint.PayloadEndpoint

public class GeneOverlapEndpoint
extends AbstractGemmaEndpoint

given a query gene id & collection of target gene ids will determine the overlapping Go terms (intersection) between each pair of Query Gene and Target Gene. The actual overlapping go terms will be returned as a single string delimited by white space.

Author:

gavin, klc

Field Summary

Fields inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

DELIMITER, manualAuthenticationService, NAMESPACE_URI, REQUEST, RESPONSE

Fields inherited from class org.springframework.xml.transform.TransformerObjectSupport

logger

Constructor Summary

Constructors

Constructor	Description
GeneOverlapEndpoint()

Method Summary

Modifier and Type	Method	Description
protected Element	invokeInternal(Element requestElement, Document document)	Reads the given requestElement, and sends a the response back.
void	setGeneOntologyService(GeneOntologyService goS)	Sets the "business service" to delegate to.
void	setGeneService(GeneService geneS)

Methods inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

authenticate, buildBadResponse, buildWrapper, encode, getArrayValues, getLastSingleNodeValue, getNodeValue, getOptionalNodeValue, getSingleNodeValue, readReport, readReport, readReport, setLocalName, setManualAuthenticationService, writeReport

Methods inherited from class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

createDocumentBuilder, createDocumentBuilderFactory, getDocumentElement, invoke, setAlwaysTransform, setExpandEntityReferences, setNamespaceAware, setValidating

Methods inherited from class org.springframework.xml.transform.TransformerObjectSupport

createTransformer, getTransformerFactory, newTransformerFactory, setTransformerFactoryClass, transform

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GeneOverlapEndpoint

public GeneOverlapEndpoint()

Method Detail

setGeneOntologyService

public void setGeneOntologyService(GeneOntologyService goS)

Sets the "business service" to delegate to.

setGeneService

public void setGeneService(GeneService geneS)

invokeInternal

protected Element invokeInternal(Element requestElement,
                                 Document document)

Reads the given requestElement, and sends a the response back.

Specified by:

invokeInternal in class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

Parameters:

requestElement - the contents of the SOAP message as DOM elements

document - a DOM document to be used for constructing Nodes

Returns:

the response element