RServeClient (baseCode 1.1.23 API)

java.lang.Object
- ubic.basecode.util.r.AbstractRClient
- - ubic.basecode.util.r.RServeClient

All Implemented Interfaces:: RClient

public class RServeClient
extends AbstractRClient

Author:: pavlidis

Field Summary
- Fields inherited from class ubic.basecode.util.r.AbstractRClient
  log

Constructor Summary

Constructors
Modifier Constructor Description

protected RServeClient()
Gets connection on default host (localhost) and port (6311)

protected RServeClient(String host)

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`assign(String argName, double[] arg)`
`void`	`assign(String arg0, int[] arg1)`
`void`	`assign(String sym, String ct)`
`void`	`assign(String argName, String[] array)`
`boolean`	`connect()`
`void`	`disconnect()`
`org.rosuda.REngine.REXP`	`eval(String command)`	Evaluate the given command
`void`	`finalize()`
`protected static String`	`findRserveCommand()`
`String`	`getLastError()`
`boolean`	`isConnected()`
`DoubleMatrix<String,String>`	`retrieveMatrix(String variableName)`	Get a matrix back out of the R context.
`void`	`voidEval(String command)`

Methods inherited from class ubic.basecode.util.r.AbstractRClient
assignFactor, assignFactor, assignMatrix, assignMatrix, assignMatrix, assignStringList, booleanDoubleArrayEval, dataFrame, dataFrameEval, doubleArrayDoubleArrayEval, doubleArrayEval, doubleArrayTwoDoubleArrayEval, doubleTwoDoubleArrayEval, intArrayEval, linearModel, linearModel, listEval, loadLibrary, loadScript, oneWayAnova, oneWayAnovaEval, remove, rowApplyLinearModel, stringEval, stringListEval, twoWayAnova, twoWayAnovaEval, variableIdentityNumber

Methods inherited from class java.lang.Object
clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- RServeClient
```
protected RServeClient()
                throws IOException
```
  Gets connection on default host (localhost) and port (6311)
  
  Throws:
  
  IOException
- RServeClient
```
protected RServeClient(String host)
                throws IOException
```
  Parameters:
  
  host -
  
  Throws:
  
  IOException

Method Detail

findRserveCommand

protected static String findRserveCommand()

assign

public void assign(String argName,
                   double[] arg)

assign

public void assign(String arg0,
                   int[] arg1)

assign

public void assign(String sym,
                   String ct)

assign

public void assign(String argName,
                   String[] array)

connect
```
public boolean connect()
```

disconnect
```
public void disconnect()
```
Specified by:

disconnect in class AbstractRClient

eval
```
public org.rosuda.REngine.REXP eval(String command)
```
Description copied from interface: RClient

Evaluate the given command

Returns:

finalize
```
public void finalize()
```
Overrides:

finalize in class Object

getLastError
```
public String getLastError()
```

isConnected
```
public boolean isConnected()
```

retrieveMatrix
```
public DoubleMatrix<String,String> retrieveMatrix(String variableName)
```
Description copied from interface: RClient

Get a matrix back out of the R context. Row and Column names are filled in for the resulting object, if they are present.

Returns:

voidEval

public void voidEval(String command)