Constant Field Values

ubic.gemma.*

ubic.gemma.cli.logging.log4j.UserDetailsThreadContextPopulator

Modifier and Type	Constant Field	Value
public static final String	CURRENT_USER_CONTEXT_KEY	"ubic.gemma.core.logging.log4j.ThreadContextKeys.currentUser"

ubic.gemma.cli.main.GemmaCLI

Modifier and Type	Constant Field	Value
public static final String	CLI_ARGUMENTS_CONTEXT_KEY	"ubic.gemma.core.logging.log4j.ThreadContextKeys.cliArguments"

ubic.gemma.cli.options.DataFileOptionsUtils

Modifier and Type	Constant Field	Value
public static final String	EXCLUDE_SAMPLE_IDENTIFIERS_OPTION	"excludeSampleIdentifiers"
public static final String	OUTPUT_DIR_OPTION	"d"
public static final String	OUTPUT_FILE_OPTION	"o"
public static final String	SCALE_TYPE_OPTION	"scaleType"
public static final String	SEPARATE_SAMPLE_FROM_ASSAYS_IDENTIFIERS_OPTION	"separateSampleFromAssayIdentifiers"
public static final String	STANDARD_LOCATION_OPTION	"standardLocation"
public static final String	STANDARD_OUTPUT_OPTION	"stdout"
public static final String	USE_BIO_ASSAY_IDS_OPTION	"useBioAssayIds"
public static final String	USE_ENSEMBL_IDS_OPTION	"useEnsemblIds"
public static final String	USE_MULTIPLE_ROWS_FOR_ASSAYS_OPTION	"useMultipleRowsForAssays"
public static final String	USE_RAW_COLUMN_NAMES_OPTION	"useRawColumnNames"

ubic.gemma.cli.util.AbstractAutoSeekingCLI<T>

Modifier and Type	Constant Field	Value
protected static final String	FORCE_OPTION	"force"

ubic.gemma.cli.util.AbstractCLI

Modifier and Type	Constant Field	Value
protected static final int	ABORTED	3
protected static final int	FAILURE	1
protected static final int	FAILURE_FROM_ERROR_OBJECTS	2
protected static final int	SUCCESS	0

ubic.gemma.cli.util.HelpUtils

Modifier and Type	Constant Field	Value
public static final String	FOOTER	"The Gemma project, Copyright \u00a9 2007-2025 The University of British Columbia."
public static final String	HEADER	"Options:"