Uses of Class
ubic.gemma.model.common.description.AnnotationValueObject

Packages that use AnnotationValueObject

Package	Description
ubic.gemma.core.tasks.maintenance
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome.gene
ubic.gemma.persistence.service.genome.sequenceAnalysis

Uses of AnnotationValueObject in ubic.gemma.core.tasks.maintenance

Methods in ubic.gemma.core.tasks.maintenance that return types with arguments of type AnnotationValueObject

Modifier and Type	Method	Description
Collection<AnnotationValueObject>	CharacteristicUpdateCommand.getAnnotationValueObjects()

Method parameters in ubic.gemma.core.tasks.maintenance with type arguments of type AnnotationValueObject

Modifier and Type	Method	Description
void	CharacteristicUpdateCommand.setAnnotationValueObjects(Collection<AnnotationValueObject> annotationValueObjects)

Uses of AnnotationValueObject in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return types with arguments of type AnnotationValueObject

Modifier and Type	Method	Description
Set<AnnotationValueObject>	ExpressionExperimentService.getAnnotations(ExpressionExperiment ee)	Retrieve annotations for a given experiment.
Set<AnnotationValueObject>	ExpressionExperimentService.getAnnotations(ExpressionExperimentSubSet ee)	Retrieve annotations for a given experiment subset.
Set<AnnotationValueObject>	ExpressionExperimentServiceImpl.getAnnotations(ExpressionExperiment expressionExperiment)
Set<AnnotationValueObject>	ExpressionExperimentServiceImpl.getAnnotations(ExpressionExperimentSubSet ee)

Uses of AnnotationValueObject in ubic.gemma.persistence.service.genome.gene

Methods in ubic.gemma.persistence.service.genome.gene that return types with arguments of type AnnotationValueObject

Modifier and Type	Method	Description
Collection<AnnotationValueObject>	GeneService.findGOTerms(Long geneId)
Collection<AnnotationValueObject>	GeneServiceImpl.findGOTerms(Long geneId)

Uses of AnnotationValueObject in ubic.gemma.persistence.service.genome.sequenceAnalysis

Methods in ubic.gemma.persistence.service.genome.sequenceAnalysis that return types with arguments of type AnnotationValueObject

Modifier and Type	Method	Description
Collection<AnnotationValueObject>	AnnotationAssociationService.removeRootTerms(Collection<AnnotationValueObject> associations)
Collection<AnnotationValueObject>	AnnotationAssociationServiceImpl.removeRootTerms(Collection<AnnotationValueObject> associations)	Remove root terms, like "molecular_function", "biological_process" and "cellular_component" Also removes any null objects.

Method parameters in ubic.gemma.persistence.service.genome.sequenceAnalysis with type arguments of type AnnotationValueObject

Modifier and Type	Method	Description
Collection<AnnotationValueObject>	AnnotationAssociationService.removeRootTerms(Collection<AnnotationValueObject> associations)
Collection<AnnotationValueObject>	AnnotationAssociationServiceImpl.removeRootTerms(Collection<AnnotationValueObject> associations)	Remove root terms, like "molecular_function", "biological_process" and "cellular_component" Also removes any null objects.