Uses of Class
ubic.gemma.model.common.description.DatabaseEntryValueObject

Packages that use DatabaseEntryValueObject

Package	Description
ubic.gemma.core.loader.util
ubic.gemma.model.expression.arrayDesign
ubic.gemma.model.expression.bioAssay
ubic.gemma.model.genome.gene
ubic.gemma.model.genome.sequenceAnalysis
ubic.gemma.persistence.service.common.description

Uses of DatabaseEntryValueObject in ubic.gemma.core.loader.util

Methods in ubic.gemma.core.loader.util with parameters of type DatabaseEntryValueObject

Modifier and Type	Method	Description
static String	ExternalDatabaseUtils.getUri(DatabaseEntryValueObject accession)	Obtain a URI for a given database entry.

Uses of DatabaseEntryValueObject in ubic.gemma.model.expression.arrayDesign

Methods in ubic.gemma.model.expression.arrayDesign that return types with arguments of type DatabaseEntryValueObject

Modifier and Type	Method	Description
Set<DatabaseEntryValueObject>	ArrayDesignValueObject.getExternalReferences()	Main external reference.

Method parameters in ubic.gemma.model.expression.arrayDesign with type arguments of type DatabaseEntryValueObject

Modifier and Type	Method	Description
void	ArrayDesignValueObject.setExternalReferences(Set<DatabaseEntryValueObject> externalReferences)	Main external reference.

Uses of DatabaseEntryValueObject in ubic.gemma.model.expression.bioAssay

Methods in ubic.gemma.model.expression.bioAssay that return DatabaseEntryValueObject

Modifier and Type	Method	Description
DatabaseEntryValueObject	BioAssayValueObject.getAccession()

Methods in ubic.gemma.model.expression.bioAssay with parameters of type DatabaseEntryValueObject

Modifier and Type	Method	Description
void	BioAssayValueObject.setAccession(DatabaseEntryValueObject accession)

Uses of DatabaseEntryValueObject in ubic.gemma.model.genome.gene

Methods in ubic.gemma.model.genome.gene that return types with arguments of type DatabaseEntryValueObject

Modifier and Type	Method	Description
Set<DatabaseEntryValueObject>	GeneValueObject.getAccessions()

Method parameters in ubic.gemma.model.genome.gene with type arguments of type DatabaseEntryValueObject

Modifier and Type	Method	Description
void	GeneValueObject.setAccessions(Set<DatabaseEntryValueObject> accessions)

Uses of DatabaseEntryValueObject in ubic.gemma.model.genome.sequenceAnalysis

Methods in ubic.gemma.model.genome.sequenceAnalysis that return DatabaseEntryValueObject

Modifier and Type	Method	Description
DatabaseEntryValueObject	BioSequenceValueObject.getSequenceDatabaseEntry()

Methods in ubic.gemma.model.genome.sequenceAnalysis with parameters of type DatabaseEntryValueObject

Modifier and Type	Method	Description
void	BioSequenceValueObject.setSequenceDatabaseEntry(DatabaseEntryValueObject sequenceDatabaseEntry)

Uses of DatabaseEntryValueObject in ubic.gemma.persistence.service.common.description

Subclasses with type arguments of type DatabaseEntryValueObject in ubic.gemma.persistence.service.common.description

Modifier and Type	Class	Description
class	DatabaseEntryDaoImpl	Base Spring DAO Class: is able to create, update, remove, load, and find objects of type DatabaseEntry.
class	DatabaseEntryServiceImpl	Spring Service base class for DatabaseEntryService, provides access to all services and entities referenced by this service.

Subinterfaces with type arguments of type DatabaseEntryValueObject in ubic.gemma.persistence.service.common.description

Modifier and Type	Interface	Description
interface	DatabaseEntryDao
interface	DatabaseEntryService

Methods in ubic.gemma.persistence.service.common.description that return DatabaseEntryValueObject

Modifier and Type	Method	Description
protected DatabaseEntryValueObject	DatabaseEntryDaoImpl.doLoadValueObject(DatabaseEntry entity)