Uses of Class
ubic.gemma.model.expression.bioAssay.BioAssayValueObject

Packages that use BioAssayValueObject

Package	Description
ubic.gemma.core.visualization
ubic.gemma.model.analysis.expression.diff
ubic.gemma.model.expression.bioAssayData
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.expression.bioAssay

Uses of BioAssayValueObject in ubic.gemma.core.visualization

Methods in ubic.gemma.core.visualization that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
Map<Long,LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>>>	ExperimentalDesignVisualizationService.sortVectorDataByDesign(Collection<DoubleVectorValueObject> dedVs, ExperimentalFactor primaryFactor)	Put data vectors in the order you'd want to display the experimental design.
Map<Long,LinkedHashMap<BioAssayValueObject,LinkedHashMap<ExperimentalFactor,Double>>>	ExperimentalDesignVisualizationServiceImpl.sortVectorDataByDesign(Collection<DoubleVectorValueObject> dedVs, ExperimentalFactor primaryFactor)

Uses of BioAssayValueObject in ubic.gemma.model.analysis.expression.diff

Methods in ubic.gemma.model.analysis.expression.diff that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
Collection<BioAssayValueObject>	DifferentialExpressionAnalysisValueObject.getBioAssaysAnalyzed()	The BioAssays analyzed in this differential expression analysis.
Collection<BioAssayValueObject>	DiffExResultSetSummaryValueObject.getBioAssaysAnalyzed()	List of BioAssays analyzed

Method parameters in ubic.gemma.model.analysis.expression.diff with type arguments of type BioAssayValueObject

Modifier and Type	Method	Description
void	DifferentialExpressionAnalysisValueObject.setBioAssaysAnalyzed(Collection<BioAssayValueObject> bioAssaysAnalyzed)	The BioAssays analyzed in this differential expression analysis.
void	DiffExResultSetSummaryValueObject.setBioAssaysAnalyzed(Collection<BioAssayValueObject> bioAssaysAnalyzed)	List of BioAssays analyzed

Uses of BioAssayValueObject in ubic.gemma.model.expression.bioAssayData

Methods in ubic.gemma.model.expression.bioAssayData that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
List<BioAssayValueObject>	BioAssayDimensionValueObject.getBioAssays()
List<BioAssayValueObject>	DataVectorValueObject.getBioAssays()

Method parameters in ubic.gemma.model.expression.bioAssayData with type arguments of type BioAssayValueObject

Modifier and Type	Method	Description
void	BioAssayDimensionValueObject.addBioAssays(List<BioAssayValueObject> bvos)
void	BioAssayDimensionValueObject.reorder(List<BioAssayValueObject> newOrdering)

Uses of BioAssayValueObject in ubic.gemma.model.expression.experiment

Methods in ubic.gemma.model.expression.experiment that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
Collection<BioAssayValueObject>	ExpressionExperimentSubsetValueObject.getBioAssays()

Method parameters in ubic.gemma.model.expression.experiment with type arguments of type BioAssayValueObject

Modifier and Type	Method	Description
void	ExpressionExperimentSubsetValueObject.setBioAssays(Collection<BioAssayValueObject> bioAssays)

Uses of BioAssayValueObject in ubic.gemma.persistence.service.expression.bioAssay

Methods in ubic.gemma.persistence.service.expression.bioAssay that return BioAssayValueObject

Modifier and Type	Method	Description
protected BioAssayValueObject	BioAssayDaoImpl.doLoadValueObject(BioAssay entity)

Methods in ubic.gemma.persistence.service.expression.bioAssay that return types with arguments of type BioAssayValueObject

Modifier and Type	Method	Description
List<BioAssayValueObject>	BioAssayDao.loadValueObjects(Collection<BioAssay> entities, Map<ArrayDesign,ArrayDesignValueObject> ad2vo, Map<BioAssay,BioAssay> assay2sourceAssayMap, boolean basic, boolean allFactorValues)
List<BioAssayValueObject>	BioAssayDaoImpl.loadValueObjects(Collection<BioAssay> entities, Map<ArrayDesign,ArrayDesignValueObject> ad2vo, Map<BioAssay,BioAssay> assay2sourceAssayMap, boolean basic, boolean allFactorValues)
List<BioAssayValueObject>	BioAssayService.loadValueObjects(Collection<BioAssay> entities, Map<BioAssay,BioAssay> assay2sourceAssayMap, boolean basic, boolean allFactorValues)
List<BioAssayValueObject>	BioAssayServiceImpl.loadValueObjects(Collection<BioAssay> entities, Map<BioAssay,BioAssay> assay2sourceAssayMap, boolean basic, boolean allFactorValues)