Uses of Class
ubic.gemma.model.expression.designElement.CompositeSequenceValueObject

Packages that use CompositeSequenceValueObject

Package	Description
ubic.gemma.model.analysis.sequence
ubic.gemma.model.expression.bioAssayData
ubic.gemma.persistence.service.expression.designElement

Uses of CompositeSequenceValueObject in ubic.gemma.model.analysis.sequence

Methods in ubic.gemma.model.analysis.sequence that return CompositeSequenceValueObject

Modifier and Type	Method	Description
CompositeSequenceValueObject	GeneMappingSummary.getCompositeSequence()

Methods in ubic.gemma.model.analysis.sequence with parameters of type CompositeSequenceValueObject

Modifier and Type	Method	Description
void	GeneMappingSummary.setCompositeSequence(CompositeSequenceValueObject compositeSequence)

Uses of CompositeSequenceValueObject in ubic.gemma.model.expression.bioAssayData

Methods in ubic.gemma.model.expression.bioAssayData that return CompositeSequenceValueObject

Modifier and Type	Method	Description
CompositeSequenceValueObject	DataVectorValueObject.getDesignElement()

Methods in ubic.gemma.model.expression.bioAssayData with parameters of type CompositeSequenceValueObject

Modifier and Type	Method	Description
void	DataVectorValueObject.setDesignElement(CompositeSequenceValueObject designElement)

Uses of CompositeSequenceValueObject in ubic.gemma.persistence.service.expression.designElement

Methods in ubic.gemma.persistence.service.expression.designElement that return CompositeSequenceValueObject

Modifier and Type	Method	Description
protected CompositeSequenceValueObject	CompositeSequenceDaoImpl.doLoadValueObject(CompositeSequence entity)
CompositeSequenceValueObject	CompositeSequenceService.loadValueObjectWithGeneMappingSummary(CompositeSequence cs)	Include gene mapping summary in the CompositeSequenceValueObject.
CompositeSequenceValueObject	CompositeSequenceServiceImpl.loadValueObjectWithGeneMappingSummary(CompositeSequence cs)

Methods in ubic.gemma.persistence.service.expression.designElement that return types with arguments of type CompositeSequenceValueObject

Modifier and Type	Method	Description
Slice<CompositeSequenceValueObject>	CompositeSequenceService.loadValueObjectsForGene(Gene gene, int start, int limit, boolean useGene2Cs)
Slice<CompositeSequenceValueObject>	CompositeSequenceServiceImpl.loadValueObjectsForGene(Gene gene, int start, int limit, boolean useGene2Cs)

Methods in ubic.gemma.persistence.service.expression.designElement with parameters of type CompositeSequenceValueObject

Modifier and Type	Method	Description
Collection<GeneMappingSummary>	CompositeSequenceService.getGeneMappingSummary(BioSequence biologicalCharacteristic, CompositeSequenceValueObject cs)
Collection<GeneMappingSummary>	CompositeSequenceServiceImpl.getGeneMappingSummary(BioSequence biologicalCharacteristic, CompositeSequenceValueObject cs)