Package ubic.gemma.web.controller.persistence

Interface SessionListManager

All Known Implementing Classes:
SessionListManagerImpl
public interface SessionListManager

  • Method Details

    • addExperimentSet

      ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject addExperimentSet(ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject eesvo)

    • addExperimentSet

      ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject addExperimentSet(ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject eesvo, boolean modified)

    • addGeneSet

      ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject addGeneSet(ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject gsvo)

    • addGeneSet

      ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject addGeneSet(ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject gsvo, boolean modified)

    • getAllExperimentSets

      Collection<ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject> getAllExperimentSets()

    • getAllGeneSets

      Collection<ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject> getAllGeneSets()

    • getAllGeneSets

      Collection<ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject> getAllGeneSets(Long taxonId)

    • getExperimentIdsInSet

      Collection<Long> getExperimentIdsInSet(Long id)

    • getExperimentSetById

      ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject getExperimentSetById(Long id)
      Get the session-bound group using the group's id

    • getExperimentsInSet

      Collection<ubic.gemma.model.expression.experiment.ExpressionExperimentDetailsValueObject> getExperimentsInSet(Long id)

    • getGeneSetById

      ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject getGeneSetById(Long id)
      Get the session-bound group using the group's id

    • getGenesInGroup

      Collection<ubic.gemma.model.genome.gene.GeneValueObject> getGenesInGroup(Long groupId)
      AJAX If the current user has access to given gene group will return the gene ids in the gene group

    • getModifiedExperimentSets

      Collection<ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject> getModifiedExperimentSets()

    • getModifiedExperimentSets

      Collection<ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject> getModifiedExperimentSets(Long taxonId)

    • getModifiedGeneSets

      Collection<ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject> getModifiedGeneSets()

    • getModifiedGeneSets

      Collection<ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject> getModifiedGeneSets(Long taxonId)

    • incrementAndGetLargestExperimentSetSessionId

      Long incrementAndGetLargestExperimentSetSessionId()

    • incrementAndGetLargestGeneSetSessionId

      Long incrementAndGetLargestGeneSetSessionId()

    • removeExperimentSet

      void removeExperimentSet(ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject eesvo)

    • removeGeneSet

      void removeGeneSet(ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject gsvo)

    • updateExperimentSet

      void updateExperimentSet(ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject eesvo)

    • updateGeneSet

      void updateGeneSet(ubic.gemma.model.genome.gene.SessionBoundGeneSetValueObject gsvo)