List of all 21,865 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| O'Grady, Tina et al. (2016) Global transcript structure resolution of high gene density genomes through multi-platform data integration.; Nucleic Acids Res, 44: e145 |
|
GSE79304 |
| O'Hanlon, Terrance P et al. (2011) Gene expression profiles from discordant monozygotic twins suggest that molecular pathways are shared among multiple systemic autoimmune diseases.; Arthritis Res Ther, 13: R69 |
|
GSE24060 |
| O'Hara, Adrian et al. (2009) Microarray analysis identifies matrix metalloproteinases (MMPs) as key genes whose expression is up-regulated in human adipocytes by macrophage-conditioned medium.; Pflugers Arch, 458: 1103-14 |
|
GSE14312 |
| O'Hara, Michael F et al. (2002) Mitochondrial transduction of ocular teratogenesis during methylmercury exposure.; Teratology, 65: 131-44 |
|
GSE1077 |
| O'Hara, Michael F et al. (2003) Mitochondrial benzodiazepine receptors regulate oxygen homeostasis in the early mouse embryo.; Reprod Toxicol, 17: 365-75 |
|
GSE1072 |
| O'Leary, Heather et al. (2020) Transcriptome analysis of rat dorsal hippocampal CA1 after an early life seizure induced by kainic acid.; Epilepsy Res, 161: 106283 |
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GSE136913 |
| O'Lone, Raegan et al. (2007) Estrogen receptors alpha and beta mediate distinct pathways of vascular gene expression, including genes involved in mitochondrial electron transport and generation of reactive oxygen species.; Mol Endocrinol, 21: 1281-96 |
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GSE9371 |
| O'Neil, Shane M et al. (2018) Forced turnover of aged microglia induces an intermediate phenotype but does not rebalance CNS environmental cues driving priming to immune challenge.; Acta Neuropathol Commun, 6: 129 |
|
GSE123847 |
| O'Neill, Adam C et al. (2022) Spatial centrosome proteome of human neural cells uncovers disease-relevant heterogeneity.; Science, 376: eabf9088 |
|
GSE201954 |
| O'Neill, Kathryn et al. (2025) ALS molecular subtypes are a combination of cellular and pathological features learned by deep multiomics classifiers.; Cell Rep, 44: 115402 |
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GSE271156 GSE272626 GSE272624 |
| O'Reilly, Dawn et al. (2013) Differentially expressed, variant U1 snRNAs regulate gene expression in human cells.; Genome Res, 23: 281-91 |
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GSE37623 |
| O'Rourke, J G et al. (2016) C9orf72 is required for proper macrophage and microglial function in mice.; Science, 351: 1324-9 |
|
GSE77681 |
| O'Shaughnessy, Katherine L et al. (2023) Thyroid hormone action controls multiple components of cell junctions at the ventricular zone in the newborn rat brain.; Front Endocrinol (Lausanne), 14: 1090081 |
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GSE218930 |
| O'Shea, T M et al. (2022) Lesion environments direct transplanted neural progenitors towards a wound repair astroglial phenotype in mice.; Nat Commun, 13: 5702 |
|
GSE194319 |
| O'Shea, Timothy M et al. (2024) Derivation and transcriptional reprogramming of border-forming wound repair astrocytes after spinal cord injury or stroke in mice.; Nat Neurosci, 27: 1505-1521 |
|
GSE241628 |
| O'Sullivan, Niamh C et al. (2007) Temporal change in gene expression in the rat dentate gyrus following passive avoidance learning.; J Neurochem, 101: 1085-98 |
|
GSE1095 |
| O-Sullivan, InSug et al. (2015) FoxO1 integrates direct and indirect effects of insulin on hepatic glucose production and glucose utilization.; Nat Commun, 6: 7079 |
|
GSE59885 |
| Oakes, Judy L et al. (2013) Ozone enhances pulmonary innate immune response to a Toll-like receptor-2 agonist.; Am J Respir Cell Mol Biol, 48: 27-34 |
|
GSE38014 |
| Oakes, Samantha R et al. (2017) A mutation in the viral sensor 2'-5'-oligoadenylate synthetase 2 causes failure of lactation.; PLoS Genet, 13: e1007072 |
|
GSE69390 |
| Oakley, Robert H et al. (2021) Combinatorial actions of glucocorticoid and mineralocorticoid stress hormone receptors are required for preventing neurodegeneration of the mouse hippocampus.; Neurobiol Stress, 15: 100369 |
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GSE149625 |
| Oakley, Robert H et al. (2024) Imbalanced glucocorticoid and mineralocorticoid stress hormone receptor function has sex-dependent and independent regulatory effects in the mouse hippocampus.; Neurobiol Stress, 28: 100589 |
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GSE240873 |
| Obata, Yuuki et al. (2020) Neuronal programming by microbiota regulates intestinal physiology.; Nature, 578: 284-289 |
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GSE140293 |
| Obeidat, Alia M et al. (2025) NERVE GROWTH FACTOR IS SUFFICIENT TO CAUSE MULTIPLE OSTEOARTHRITIS-RELEVANT PATHOLOGICAL FEATURES IN NAÏVE MURINE KNEE JOINTS.; bioRxiv, [no vol.]: [no pages] |
|
GSE287526 |
| Oberdoerffer, Philipp et al. (2008) SIRT1 redistribution on chromatin promotes genomic stability but alters gene expression during aging.; Cell, 135: 907-18 |
|
GSE13120 |
| Oberley, Christopher C et al. (2015) Genetic background determines if Stat5b suppresses or enhances murine hepatocarcinogenesis.; Mol Carcinog, 54: 959-70 |
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GSE60253 |
| Obermoser, Gerlinde et al. (2013) Systems scale interactive exploration reveals quantitative and qualitative differences in response to influenza and pneumococcal vaccines.; Immunity, 38: 831-44 |
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GSE29536 GSE30059 |
| Obier, Nadine et al. (2015) Polycomb protein EED is required for silencing of pluripotency genes upon ESC differentiation.; Stem Cell Rev, 11: 50-61 |
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GSE49305 |
| Ocampo, Sandra M et al. (2012) Functionally enhanced siRNA targeting TNF? attenuates DSS-induced colitis and TLR-mediated immunostimulation in mice.; Mol Ther, 20: 382-90 |
|
GSE31906 |
| Ocasio, Jennifer K et al. (2019) GSK-3 modulates SHH-driven proliferation in postnatal cerebellar neurogenesis and medulloblastoma.; Development, 146: [no pages] |
|
GSE135463 |
| Ocañas, Sarah R et al. (2022) Differential Regulation of Mouse Hippocampal Gene Expression Sex Differences by Chromosomal Content and Gonadal Sex.; Mol Neurobiol, [no vol.]: [no pages] |
|
GSE184098 |
| Occean, James R et al. (2023) Gene body DNA hydroxymethylation restricts the magnitude of transcriptional changes during aging.; bioRxiv, [no vol.]: [no pages] |
|
GSE221123 |
| Ocean, Allyson J et al. (2014) Phase II trial of bortezomib alone or in combination with irinotecan in patients with adenocarcinoma of the gastroesophageal junction or stomach.; Invest New Drugs, 32: 542-8 |
|
GSE52138 |
| Ochi, Shinichiro et al. (2020) Identifying Blood Transcriptome Biomarkers of Alzheimer's Disease Using Transgenic Mice.; Mol Neurobiol, 57: 4941-4951 |
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GSE144459 |
| Ochi, Shohei et al. (2024) A Transcriptomic Dataset of Embryonic Murine Telencephalon.; Sci Data, 11: 586 |
|
GSE252922 |
| Ochi, Yotaro et al. (2020) Combined Cohesin-RUNX1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes.; Cancer Discov, 10: 836-853 |
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GSE131581.2 GSE131581.1 |
| Ochiai, Kyoko et al. (2013) Transcriptional regulation of germinal center B and plasma cell fates by dynamical control of IRF4.; Immunity, 38: 918-29 |
|
GSE46606 |
| Ochiai, Nagahiro et al. (2024) The pivotal role of the Hes1/Piezo1 pathway in the pathophysiology of glucocorticoid-induced osteoporosis.; JCI Insight, 9: [no pages] |
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GSE276529 GSE276391 |
| Ochoa, Cesar E et al. (2011) Interleukin 6, but not T helper 2 cytokines, promotes lung carcinogenesis.; Cancer Prev Res (Phila), 4: 51-64 |
|
GSE19605 |
| Ochoa-Callejero, Laura et al. (2016) Lack of adrenomedullin in mouse endothelial cells results in defective angiogenesis, enhanced vascular permeability, less metastasis, and more brain damage.; Sci Rep, 6: 33495 |
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GSE84345 |
| Ochocinska, Margaret J et al. (2012) NeuroD1 is required for survival of photoreceptors but not pinealocytes: results from targeted gene deletion studies.; J Neurochem, 123: 44-59 |
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GSE35396 |
| Ochs, Michael F et al. (2009) Detection of treatment-induced changes in signaling pathways in gastrointestinal stromal tumors using transcriptomic data.; Cancer Res, 69: 9125-32 |
|
GSE17018 |
| Ochsenreither, Sebastian et al. (2012) Cyclin-A1 represents a new immunogenic targetable antigen expressed in acute myeloid leukemia stem cells with characteristics of a cancer-testis antigen.; Blood, 119: 5492-501 |
|
GSE37307 |
| Ochsner, Scott A et al. (2007) Transcriptional profiling of bipotential embryonic liver cells to identify liver progenitor cell surface markers.; Stem Cells, 25: 2476-87 |
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GSE6942 GSE6966 |
| Ockenhouse, Christian F et al. (2005) Functional genomic relationships in HIV-1 disease revealed by gene-expression profiling of primary human peripheral blood mononuclear cells.; J Infect Dis, 191: 2064-74 |
|
GSE2171 |
| Ockenhouse, Christian F et al. (2006) Common and divergent immune response signaling pathways discovered in peripheral blood mononuclear cell gene expression patterns in presymptomatic and clinically apparent malaria.; Infect Immun, 74: 5561-73 |
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GSE5418 |
| Octavia, Yanti et al. (2017) Folic acid reduces doxorubicin-induced cardiomyopathy by modulating endothelial nitric oxide synthase.; J Cell Mol Med, 21: 3277-3287 |
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GSE64476 |
| Ocłoń, Ewa et al. (2024) Impact of modulating leptin sensitivity on the transcriptomic profile of adult-derived hypothalamic mouse neurons.; Front Mol Neurosci, 17: 1518737 |
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GSE280030 |
| Oda, Masaaki et al. (2013) DNA methylation restricts lineage-specific functions of transcription factor Gata4 during embryonic stem cell differentiation.; PLoS Genet, 9: e1003574 |
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GSE36814 |
| Oda, Sayaka et al. (2022) Myocardial TRPC6-mediated Zn2+influx induces beneficial positive inotropy through β-adrenoceptors.; Nat Commun, 13: 6374 |
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GSE189494 |
| Odegaard, Katherine E et al. (2020) A Holistic Systems Approach to Characterize the Impact of Pre- and Post-natal Oxycodone Exposure on Neurodevelopment and Behavior.; Front Cell Dev Biol, 8: 619199 |
|
GSE159563 |
| Odegaard, Katherine E et al. (2020) Characterization of the intergenerational impact of in utero and postnatal oxycodone exposure.; Transl Psychiatry, 10: 329 |
|
GSE157348 |
| Oeder, Sebastian et al. (2012) Airborne indoor particles from schools are more toxic than outdoor particles.; Am J Respir Cell Mol Biol, 47: 575-82 |
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GSE34607 |
| Oestereich, Felix et al. (2022) The cholesteryl ester transfer protein (CETP) raises cholesterol levels in the brain.; J Lipid Res, 63: 100260 |
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GSE111242 |
| Oetjen, Landon K et al. (2017) Sensory Neurons Co-opt Classical Immune Signaling Pathways to Mediate Chronic Itch.; Cell, 171: 217-228.e13 |
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GSE90883 GSE237920 |
| Oezer, Kuebra et al. (2023) The effect of GLP-1 receptor agonist lixisenatide on experimental diabetic retinopathy.; Acta Diabetol, 60: 1551-1565 |
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GSE236333 |
| Offenbacher, Rachel et al. (2025) Polyamine Depletion by D,L-α-Difluoromethylornithine Inhibits Ewing Sarcoma Metastasis by Inducing Ferroptosis.; Clin Cancer Res, 31: 4196-4210 |
|
GSE274115 |
| Oga, Toru et al. (2009) Prostaglandin F(2alpha) receptor signaling facilitates bleomycin-induced pulmonary fibrosis independently of transforming growth factor-beta.; Nat Med, 15: 1426-30 |
|
GSE18800 |
| Ogata, Shohei et al. (2009) Clinical score and transcript abundance patterns identify Kawasaki disease patients who may benefit from addition of methylprednisolone.; Pediatr Res, 66: 577-84 |
|
GSE16797 |
| Ogawa, Mana et al. (2018) Short-term mastication after weaning upregulates GABAergic signalling and reduces dendritic spine in thalamus.; Biochem Biophys Res Commun, 498: 621-626 |
|
GSE106766 |
| Ogihara, Yoshihito et al. (2014) Transcriptional regulation by infliximab therapy in Kawasaki disease patients with immunoglobulin resistance.; Pediatr Res, 76: 287-93 |
|
GSE48498 |
| Ogunkolade, Babatunji W et al. (2013) BORIS/CTCFL is an RNA-binding protein that associates with polysomes.; BMC Cell Biol, 14: 52 |
|
GSE42294 |
| Oguro, Hideyuki et al. (2010) Poised lineage specification in multipotential hematopoietic stem and progenitor cells by the polycomb protein Bmi1.; Cell Stem Cell, 6: 279-86 |
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GSE19796 |
| Oguro, Hideyuki et al. (2012) Lethal myelofibrosis induced by Bmi1-deficient hematopoietic cells unveils a tumor suppressor function of the polycomb group genes.; J Exp Med, 209: 445-54 |
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GSE31086 |
| Oguro-Ando, A et al. (2015) Increased CYFIP1 dosage alters cellular and dendritic morphology and dysregulates mTOR.; Mol Psychiatry, 20: 1069-78 |
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GSE40852 |
| Oh, Byeongtaek et al. (2022) Electrical modulation of transplanted stem cells improves functional recovery in a rodent model of stroke.; Nat Commun, 13: 1366 |
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GSE185402 |
| Oh, Danielle H et al. (2023) Rationally designed chimeric PI3K-BET bromodomain inhibitors elicit curative responses in MYC-driven lymphoma.; Proc Natl Acad Sci U S A, 120: e2306414120 |
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GSE188437 |
| Oh, Hyunjung et al. (2022) Lower Levels of GABAergic Function Markers in Corticotropin-Releasing Hormone-Expressing Neurons in the sgACC of Human Subjects With Depression.; Front Psychiatry, 13: 827972 |
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GSE193417 |
| Oh, J et al. (2020) Macrophage secretion of miR-106b-5p causes renin-dependent hypertension.; Nat Commun, 11: 4798 |
|
GSE117704 |
| Oh, J-E et al. (2013) Differential gene body methylation and reduced expression of cell adhesion and neurotransmitter receptor genes in adverse maternal environment.; Transl Psychiatry, 3: e218 |
|
GSE35838 |
| Oh, Jun et al. (2011) Stimulation of the calcium-sensing receptor stabilizes the podocyte cytoskeleton, improves cell survival, and reduces toxin-induced glomerulosclerosis.; Kidney Int, 80: 483-92 |
|
GSE15761 |
| Oh, Kyu-Seon et al. (2017) Anti-Inflammatory Chromatinscape Suggests Alternative Mechanisms of Glucocorticoid Receptor Action.; Immunity, 47: 298-309.e5 |
|
GSE93735 |
| Oh, Min-Hee et al. (2020) Targeting glutamine metabolism enhances tumor-specific immunity by modulating suppressive myeloid cells.; J Clin Invest, 130: 3865-3884 |
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GSE119733 |
| Oh, Sang Cheul et al. (2018) Clinical and genomic landscape of gastric cancer with a mesenchymal phenotype.; Nat Commun, 9: 1777 |
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GSE28541 GSE26901 GSE26899 |
| Oh, Seung-Hun et al. (2018) Interleukin-1 receptor antagonist-mediated neuroprotection by umbilical cord-derived mesenchymal stromal cells following transplantation into a rodent stroke model.; Exp Mol Med, 50: 1-12 |
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GSE78731 |
| Oh, Soo-Jin et al. (2020) Coxsackievirus B3 Infection of Human Neural Progenitor Cells Results in Distinct Expression Patterns of Innate Immune Genes.; Viruses, 12: [no pages] |
|
GSE136734 |
| Oh, Soo-Jin et al. (2024) Pharmacological targeting of mitophagy via ALT001 improves herpes simplex virus 1 (HSV1)-mediated microglial inflammation and promotes amyloid β phagocytosis by restricting HSV1 infection.; Theranostics, 15: 4890-4908 |
|
GSE278015 |
| Oh, Teak-Jung et al. (2024) Spatiotemporal Control of Inflammatory Lytic Cell Death Through Optogenetic Induction of RIPK3 Oligomerization.; J Mol Biol, 436: 168628 |
|
GSE268650 |
| Oh, Yohan et al. (2016) Functional Coupling with Cardiac Muscle Promotes Maturation of hPSC-Derived Sympathetic Neurons.; Cell Stem Cell, 19: 95-106 |
|
GSE80689 |
| Oh, Yohan et al. (2017) Zika virus directly infects peripheral neurons and induces cell death.; Nat Neurosci, 20: 1209-1212 |
|
GSE87750 |
| Oh, Young Mi et al. (2022) Age-related Huntington's disease progression modeled in directly reprogrammed patient-derived striatal neurons highlights impaired autophagy.; Nat Neurosci, 25: 1420-1433 |
|
GSE194241 |
| Oh, Younseo et al. (2018) Lin28B and miR-142-3p regulate neuronal differentiation by modulating Staufen1 expression.; Cell Death Differ, 25: 432-443 |
|
GSE94948 |
| Ohara, Yuuki et al. (2023) SERPINB3-MYC axis induces the basal-like/squamous subtype and enhances disease progression in pancreatic cancer.; Cell Rep, 42: 113434 |
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GSE223908.1 GSE223536 GSE224564 GSE223908.2 |
| Ohashi, Minori et al. (2018) Loss of MECP2 Leads to Activation of P53 and Neuronal Senescence.; Stem Cell Reports, 10: 1453-1463 |
|
GSE107399 |
| Ohashi, Yuichi et al. (2024) Heterogeneous gene expression during early arteriovenous fistula remodeling suggests that downregulation of metabolism predicts adaptive venous remodeling.; Sci Rep, 14: 13287 |
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GSE244317 |
| Ohkawara, Takeshi et al. (2011) The amyloid precursor protein intracellular domain alters gene expression and induces neuron-specific apoptosis.; Gene, 475: 1-9 |
|
GSE22690 |
| Ohki, Daisuke et al. (2022) Transcriptome of sessile serrated adenoma/polyps is associated with MSI-high colorectal cancer and decreased expression of CDX2.; Cancer Med, 11: 5066-5078 |
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GSE198692 |
| Ohlig, Stefanie et al. (2021) Molecular diversity of diencephalic astrocytes reveals adult astrogenesis regulated by Smad4.; EMBO J, 40: e107532 |
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GSE149112 |
| Oğuz, Ali Kemal et al. (2023) Behçet syndrome: The disturbed balance between anti- (CLEC12A, CLC) and proinflammatory (IFI27) gene expressions.; Immun Inflamm Dis, 11: e836 |
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GSE209567 |