List of all 16,681 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| 't Hoen, Peter A C et al. (2011) mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance.; Nucleic Acids Res, 39: 556-66 |
|
GSE14387 |
| ?astowska, M et al. (2007) Identification of candidate genes involved in neuroblastoma progression by combining genomic and expression microarrays with survival data.; Oncogene, 26: 7432-44 |
|
GSE13136 |
| Aarts, Marieke et al. (2017) Coupling shRNA screens with single-cell RNA-seq identifies a dual role for mTOR in reprogramming-induced senescence.; Genes Dev, 31: 2085-2098 |
|
GSE94928 |
| Abad, María et al. (2013) Reprogramming in vivo produces teratomas and iPS cells with totipotency features.; Nature, 502: 340-5 |
|
GSE48364 |
| Abadi, Arkan et al. (2009) Limb immobilization induces a coordinate down-regulation of mitochondrial and other metabolic pathways in men and women.; PLoS One, 4: e6518 |
|
GSE14901 |
| Abarinov, Vladimir et al. (2023) Major β cell-specific functions of NKX2.2 are mediated via the NK2-specific domain.; Genes Dev, 37: 490-504 |
|
GSE226345 |
| Abba, Mohammed et al. (2012) Look who's talking: deregulated signaling in colorectal cancer.; Cancer Genomics Proteomics, 9: 15-25 |
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GSE31279 |
| Abbas, Alexander R et al. (2009) Deconvolution of blood microarray data identifies cellular activation patterns in systemic lupus erythematosus.; PLoS One, 4: e6098 |
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GSE11057 GSE11058 |
| Abbas, Eman et al. (2021) Conditional Loss of BAF (mSWI/SNF) Scaffolding Subunits Affects Specification and Proliferation of Oligodendrocyte Precursors in Developing Mouse Forebrain.; Front Cell Dev Biol, 9: 619538 |
|
GSE165228 |
| Abbott, Joshua et al. (2023) Generation and characterization of NGLY1 patient-derived midbrain organoids.; Front Cell Dev Biol, 11: 1039182 |
|
GSE224294 |
| Abcouwer, Steven F et al. (2010) Effects of ischemic preconditioning and bevacizumab on apoptosis and vascular permeability following retinal ischemia-reperfusion injury.; Invest Ophthalmol Vis Sci, 51: 5920-33 |
|
GSE20521 |
| Abcouwer, Steven F et al. (2024) The mouse retinal pigment epithelium mounts an innate immune defense response following retinal detachment.; J Neuroinflammation, 21: 74 |
|
GSE261021 |
| Abdalkader, Rodi et al. (2022) An efficient simplified method for the generation of corneal epithelial cells from human pluripotent stem cells.; Hum Cell, 35: 1016-1029 |
|
GSE193514 |
| AbdAlla, Said et al. (2013) ACE inhibition with captopril retards the development of signs of neurodegeneration in an animal model of Alzheimer's disease.; Int J Mol Sci, 14: 16917-42 |
|
GSE46871 |
| Abdallah, Aalaa S et al. (2023) Novel genetically engineered H3.3G34R model reveals cooperation with ATRX loss in upregulation ofHoxacluster genes and promotion of neuronal lineage.; Neurooncol Adv, 5: vdad003 |
|
GSE197988 |
| Abdel-Hafiz, Hany A et al. (2023) Y chromosome loss in cancer drives growth by evasion of adaptive immunity.; Nature, 619: 624-631 |
|
GSE229233 |
| Abdelaal, Ahmed M et al. (2023) A first-in-class fully modified version of miR-34a with outstanding stability, activity, and anti-tumor efficacy.; Oncogene, 42: 2985-2999 |
|
GSE237836 |
| Abdi, Khadar et al. (2018) Uncovering inherent cellular plasticity of multiciliated ependyma leading to ventricular wall transformation and hydrocephalus.; Nat Commun, 9: 1655 |
|
GSE111182 |
| Abdul Manap, Aimi Syamima et al. (2020) Explicating anti-amyloidogenic role of curcumin and piperine via amyloid beta (Aβ) explicit pathway: recovery and reversal paradigm effects.; PeerJ, 8: e10003 |
|
GSE143998 |
| Abdul-Nabi, Anmaar M et al. (2010) In vitro transformation of primary human CD34+ cells by AML fusion oncogenes: early gene expression profiling reveals possible drug target in AML.; PLoS One, 5: e12464 |
|
GSE57194 |
| Abdul-Rahman, Omar et al. (2012) Altered gene expression profiles in the hippocampus and prefrontal cortex of type 2 diabetic rats.; BMC Genomics, 13: 81 |
|
GSE34451 |
| Abdulai-Saiku, Samira et al. (2025) The maternal X chromosome affects cognition and brain ageing in female mice.; Nature, 638: 152-159 |
|
GSE200461 |
| Abe, Shigehiro et al. (2016) Sphere-Derived Multipotent Progenitor Cells Obtained From Human Oral Mucosa Are Enriched in Neural Crest Cells.; Stem Cells Transl Med, 5: 117-28 |
|
GSE68636 |
| Abe, Shigehiro et al. (2022) Differences in the stemness characteristics and molecular markers of distinct human oral tissue neural crest-derived multilineage cells.; Cell Prolif, 55: e13286 |
|
GSE164327 |
| Abe, Takayuki et al. (2013) STING recognition of cytoplasmic DNA instigates cellular defense.; Mol Cell, 50: 5-15 |
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GSE43480 GSE43481 |
| Abe, Yasuko O et al. (2022) Rhythmic transcription of Bmal1 stabilizes the circadian timekeeping system in mammals.; Nat Commun, 13: 4652 |
|
GSE199061 |
| Abel, M H et al. (2009) Effects of FSH on testicular mRNA transcript levels in the hypogonadal mouse.; J Mol Endocrinol, 42: 291-303 |
|
GSE8924 |
| Abela, Lucia et al. (2024) Neurodevelopmental and synaptic defects in DNAJC6 parkinsonism, amenable to gene therapy.; Brain, 147: 2023-2037 |
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GSE208353 |
| Abellanas, Miguel Angel et al. (2019) Midbrain microglia mediate a specific immunosuppressive response under inflammatory conditions.; J Neuroinflammation, 16: 233 |
|
GSE133617 |
| Abernathy, Daniel G et al. (2017) MicroRNAs Induce a Permissive Chromatin Environment that Enables Neuronal Subtype-Specific Reprogramming of Adult Human Fibroblasts.; Cell Stem Cell, 21: 332-348.e9 |
|
GSE102034 GSE102033 GSE102025 |
| Abiko, Kaoru et al. (2013) PD-L1 on tumor cells is induced in ascites and promotes peritoneal dissemination of ovarian cancer through CTL dysfunction.; Clin Cancer Res, 19: 1363-74 |
|
GSE39204 |
| Abimannan, Thiruvaimozhi et al. (2024) Sphingolipid biosynthesis is essential for metabolic rewiring during TH17 cell differentiation.; Sci Adv, 10: eadk1045 |
|
GSE254602 |
| Abiraman, Kavitha et al. (2015) Anti-muscarinic adjunct therapy accelerates functional human oligodendrocyte repair.; J Neurosci, 35: 3676-88 |
|
GSE32589 |
| Abjean, Laurene et al. (2022) Reactive astrocytes promote proteostasis in Huntington's disease through the JAK2-STAT3 pathway.; Brain, [no vol.]: [no pages] |
|
GSE107486 GSE171141 |
| Ablain, Julien et al. (2014) Activation of a promyelocytic leukemia-tumor protein 53 axis underlies acute promyelocytic leukemia cure.; Nat Med, 20: 167-74 |
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GSE51723 |
| Abnaof, Khalid et al. (2014) TGF-? stimulation in human and murine cells reveals commonly affected biological processes and pathways at transcription level.; BMC Syst Biol, 8: 55 |
|
GSE46109 |
| Abo, Kristine M et al. (2022) Air-liquid interface culture promotes maturation and allows environmental exposure of pluripotent stem cell-derived alveolar epithelium.; JCI Insight, 7: [no pages] |
|
GSE184143 |
| Abo-Rady, Masin et al. (2020) Knocking out C9ORF72 Exacerbates Axonal Trafficking Defects Associated with Hexanucleotide Repeat Expansion and Reduces Levels of Heat Shock Proteins.; Stem Cell Reports, 14: 390-405 |
|
GSE143743 |
| Abou Assale, Tawfik et al. (2024) Neuroprotective role of sialic-acid-binding immunoglobulin-like lectin-11 in humanized transgenic mice.; Front Neurosci, 18: 1504765 |
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GSE282391 |
| Abou Khouzam, Raefa et al. (2023) Chronic hypoxia is associated with transcriptomic reprogramming and increased genomic instability in cancer cells.; Front Cell Dev Biol, 11: 1095419 |
|
GSE222048 |
| Abrahams, B S et al. (2007) Genome-wide analyses of human perisylvian cerebral cortical patterning.; Proc Natl Acad Sci U S A, 104: 17849-54 |
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GSE9335.1 GSE9335.2 |
| Abramowski, Pierre et al. (2014) The orally available, synthetic ether lipid edelfosine inhibits T cell proliferation and induces a type I interferon response.; PLoS One, 9: e91970 |
|
GSE44392 |
| Abravanel, Daniel L et al. (2015) Notch promotes recurrence of dormant tumor cells following HER2/neu-targeted therapy.; J Clin Invest, 125: 2484-96 |
|
GSE51628 |
| Abud, Edsel M et al. (2017) iPSC-Derived Human Microglia-like Cells to Study Neurological Diseases.; Neuron, 94: 278-293.e9 |
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GSE89189 |
| Abulaiti, Xianmixinuer et al. (2022) Disrupted mossy fiber connections from defective embryonic neurogenesis contribute to SOX11-associated schizophrenia.; Cell Mol Life Sci, 79: 180 |
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GSE158777 |
| Abyzov, Alexej et al. (2012) Somatic copy number mosaicism in human skin revealed by induced pluripotent stem cells.; Nature, 492: 438-42 |
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GSE41563 GSE41716 |
| Acanda de la Rocha, Arlet M et al. (2016) Analysis of SOX2-Regulated Transcriptome in Glioma Stem Cells.; PLoS One, 11: e0163155 |
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GSE79302 |
| Acebron, Sergio P et al. (2014) Mitotic wnt signaling promotes protein stabilization and regulates cell size.; Mol Cell, 54: 663-74 |
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GSE50248 |
| Aceves, Miriam et al. (2024) Role of Neurocellular Endoplasmic Reticulum Stress Response in Alzheimer's Disease and Related Dementias Risk.; Genes (Basel), 15: [no pages] |
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GSE263319 |
| Acharya, Nandini et al. (2020) Endogenous Glucocorticoid Signaling Regulates CD8+T Cell Differentiation and Development of Dysfunction in the Tumor Microenvironment.; Immunity, 53: 658-671.e6 |
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GSE153556 |
| Achiron, Anat et al. (2010) Microarray analysis identifies altered regulation of nuclear receptor family members in the pre-disease state of multiple sclerosis.; Neurobiol Dis, 38: 201-9 |
|
GSE14895 |
| Achour, Mariem et al. (2021) Luteolin Modulates Neural Stem Cells Fate Determination:In vitroStudy on Human Neural Stem Cells, andin vivoStudy on LPS-Induced Depression Mice Model.; Front Cell Dev Biol, 9: 753279 |
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GSE148160 GSE181522 GSE181285 |
| Achour, Mayada et al. (2015) Neuronal identity genes regulated by super-enhancers are preferentially down-regulated in the striatum of Huntington's disease mice.; Hum Mol Genet, 24: 3481-96 |
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GSE59572 |
| Achtman, Ariel H et al. (2012) Effective adjunctive therapy by an innate defense regulatory peptide in a preclinical model of severe malaria.; Sci Transl Med, 4: 135ra64 |
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GSE32007 |
| Ackermann, Sandra et al. (2014) FOXP1 inhibits cell growth and attenuates tumorigenicity of neuroblastoma.; BMC Cancer, 14: 840 |
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GSE62419 |
| Ackermann, Tobias et al. (2019) C/EBPβ-LIP induces cancer-type metabolic reprogramming by regulating thelet-7/LIN28B circuit in mice.; Commun Biol, 2: 208 |
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GSE110316 |
| Acosta, Juan Carlos et al. (2013) A complex secretory program orchestrated by the inflammasome controls paracrine senescence.; Nat Cell Biol, 15: 978-90 |
|
GSE41318 |
| Acosta-Rodríguez, Victoria A et al. (2024) Misaligned feeding uncouples daily rhythms within brown adipose tissue and between peripheral clocks.; Cell Rep, 43: 114523 |
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GSE266543 |
| Acquati, Serena et al. (2013) Epigenetic regulation of survivin by Bmi1 is cell type specific during corticogenesis and in gliomas.; Stem Cells, 31: 190-202 |
|
GSE31607 |
| Adaikkan, Chinnakkaruppan et al. (2019) Gamma Entrainment Binds Higher-Order Brain Regions and Offers Neuroprotection.; Neuron, 102: 929-943.e8 |
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GSE115244.3 GSE115244.2 GSE115244.1 |
| Adam, Oliver et al. (2010) Rac1-induced connective tissue growth factor regulates connexin 43 and N-cadherin expression in atrial fibrillation.; J Am Coll Cardiol, 55: 469-80 |
|
GSE14975 |
| Adams, Jason W et al. (2024) Loss of GTF2I promotes neuronal apoptosis and synaptic reduction in human cellular models of neurodevelopment.; Cell Rep, 43: 113867 |
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GSE252761 |
| Adams, Joe C (2009) Immunocytochemical traits of type IV fibrocytes and their possible relations to cochlear function and pathology.; J Assoc Res Otolaryngol, 10: 369-82 |
|
GSE13421 |
| Adams, Rachael C et al. (2021) Donor bone marrow-derived macrophage MHC II drives neuroinflammation and altered behaviour during chronic GVHD in mice.; Blood, [no vol.]: [no pages] |
|
GSE179441 |
| Adamska, Julia Z et al. (2023) Ablation of Adar1 in myeloid cells imprints a global antiviral state in the lung and heightens early immunity against SARS-CoV-2.; Cell Rep, 42: 112038 |
|
GSE222326 |
| Addis, Russell C et al. (2013) Optimization of direct fibroblast reprogramming to cardiomyocytes using calcium activity as a functional measure of success.; J Mol Cell Cardiol, 60: 97-106 |
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GSE45274 |
| Adel-Patient, Karine et al. (2023) Assessment of local and systemic signature of eosinophilic esophagitis (EoE) in children through multi-omics approaches.; Front Immunol, 14: 1108895 |
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GSE184182 |
| Adesse, Daniel et al. (2010) Transcriptomic signatures of alterations in a myoblast cell line infected with four distinct strains of Trypanosoma cruzi.; Am J Trop Med Hyg, 82: 846-54 |
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GSE18175 |
| Adhicary, Subhodip et al. (2023) Rbpj Deficiency Disrupts Vascular Remodeling via Abnormal Apelin and Cdc42 (Cell Division Cycle 42) Activity in Brain Arteriovenous Malformation.; Stroke, 54: 1593-1605 |
|
GSE223531 |
| Adikusuma, Fatwa et al. (2017) Functional Equivalence of the SOX2 and SOX3 Transcription Factors in the Developing Mouse Brain and Testes.; Genetics, 206: 1495-1503 |
|
GSE96805 |
| Aditi, Downing, Susanna M et al. (2021) Genome instability independent of type I interferon signaling drives neuropathology caused by impaired ribonucleotide excision repair.; Neuron, [no vol.]: [no pages] |
|
GSE181159 |
| Adkins-Threats, Mahliyah et al. (2024) Metabolic regulator ERRγ governs gastric stem cell differentiation into acid-secreting parietal cells.; Cell Stem Cell, 31: 886-903.e8 |
|
GSE234777 |
| Adlanmerini, Marine et al. (2014) Mutation of the palmitoylation site of estrogen receptor ? in vivo reveals tissue-specific roles for membrane versus nuclear actions.; Proc Natl Acad Sci U S A, 111: E283-90 |
|
GSE53237 |
| Adlanmerini, Marine et al. (2020) Hypothalamic REV-ERB nuclear receptors control diurnal food intake and leptin sensitivity in diet-induced obese mice.; J Clin Invest, [no vol.]: [no pages] |
|
GSE148644 |
| Adrian, Max et al. (2023) Polarized microtubule remodeling transforms the morphology of reactive microglia and drives cytokine release.; Nat Commun, 14: 6322 |
|
GSE238210 |
| Adrianse, Robin L et al. [Unknown date]Perturbed maintenance of transcriptional repression on the inactive X-chromosome in the mouse brain after Xist deletion.; Epigenetics Chromatin, 11: 50 |
|
GSE119066 |
| Adusumilli, Lavanya et al. (2020) miR-7Controls the Dopaminergic/Oligodendroglial Fate through Wnt/?-catenin Signaling Regulation.; Cells, 9: [no pages] |
|
GSE128011 |
| Adusumilli, Vijay S et al. (2021) ROS Dynamics Delineate Functional States of Hippocampal Neural Stem Cells and Link to Their Activity-Dependent Exit from Quiescence.; Cell Stem Cell, 28: 300-314.e6 |
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GSE123960 GSE123961 |
| Aevermann, Brian D et al. (2014) A comprehensive collection of systems biology data characterizing the host response to viral infection.; Sci Data, 1: 140033 |
|
GSE49263 |
| Affaneh, Amira et al. (2025) Inhibition of Bone Morphogenetic Protein Signaling Prevents Tau Pathology in iPSC Derived Neurons and PS19 Mice.; Ann Neurol, 97: 657-672 |
|
GSE253647 |
| Affer, M et al. (2011) Gene Expression Differences between Enriched Normal and Chronic Myelogenous Leukemia Quiescent Stem/Progenitor Cells and Correlations with Biological Abnormalities.; J Oncol, 2011: 798592 |
|
GSE24739 |
| Affinati, Alison H et al. (2021) Cross-species analysis defines the conservation of anatomically segregated VMH neuron populations.; Elife, 10: [no pages] |
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GSE172206 GSE172202 GSE172200 |
| Affymetrix ENCODE Transcriptome Project et al. (2009) Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.; Nature, 457: 1028-32 |
|
GSE14362 |
| Affò, Silvia et al. (2013) Transcriptome analysis identifies TNF superfamily receptors as potential therapeutic targets in alcoholic hepatitis.; Gut, 62: 452-60 |
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GSE28619 |
| Africano, Chiara et al. (2024) Identification of a histone deacetylase inhibitor as a therapeutic candidate for congenital central hypoventilation syndrome.; Mol Ther Nucleic Acids, 35: 102319 |
|
GSE250244 |
| Afsahi, Arya et al. (2023) LCL161 enhances expansion and survival of engineered anti-tumor T cells but is restricted by death signaling.; Front Immunol, 14: 1179827 |
|
GSE227986 |