List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Seuter, Sabine et al. (2013) Chromatin acetylation at transcription start sites and vitamin D receptor binding regions relates to effects of 1α,25-dihydroxyvitamin D3 and histone deacetylase inhibitors on gene expression.; Nucleic Acids Res, 41: 110-24 |
|
GSE36323 |
| Sevastianova, Ksenia et al. (2011) Comparison of dorsocervical with abdominal subcutaneous adipose tissue in patients with and without antiretroviral therapy-associated lipodystrophy.; Diabetes, 60: 1894-900 |
|
GSE28073 |
| Sevastou, Ioanna et al. (2016) Characterisation of Transcriptional Changes in the Spinal Cord of the Progressive Experimental Autoimmune Encephalomyelitis Biozzi ABH Mouse Model by RNA Sequencing.; PLoS One, 11: e0157754 |
|
GSE78996 |
| Severa, Martina et al. (2014) The transcriptional repressor BLIMP1 curbs host defenses by suppressing expression of the chemokine CCL8.; J Immunol, 192: 2291-304 |
|
GSE53145 |
| Severini, C et al. (2017) Nerve growth factor derivative NGF61/100 promotes outgrowth of primary sensory neurons with reduced signs of nociceptive sensitization.; Neuropharmacology, 117: 134-148 |
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GSE80257 |
| Sevigny, Joseph L et al. (2025) Protein arginine methyltransferase 5 sustains Tip60-EP400 complex via SRSF1 in Merkel cell carcinoma.; Life Sci Alliance, 8: [no pages] |
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GSE290105 |
| Sewal, Angila S et al. (2015) Experience Modulates the Effects of Histone Deacetylase Inhibitors on Gene and Protein Expression in the Hippocampus: Impaired Plasticity in Aging.; J Neurosci, 35: 11729-42 |
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GSE172109 |
| Seward, Christopher H et al. (2022) An epigenomic shift in amygdala marks the transition to maternal behaviors in alloparenting virgin female mice.; PLoS One, 17: e0263632 |
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GSE184549 |
| Sgadò, Paola et al. (2013) Transcriptome profiling in engrailed-2 mutant mice reveals common molecular pathways associated with autism spectrum disorders.; Mol Autism, 4: 51 |
|
GSE51612 |
| Sha, Chulin et al. (2015) Transferring genomics to the clinic: distinguishing Burkitt and diffuse large B cell lymphomas.; Genome Med, 7: 64 |
|
GSE69049 |
| Sha, Chulin et al. (2019) Molecular High-Grade B-Cell Lymphoma: Defining a Poor-Risk Group That Requires Different Approaches to Therapy.; J Clin Oncol, 37: 202-212 |
|
GSE117556 |
| Sha, Haibo et al. (2014) Adipocyte spliced form of X-box-binding protein 1 promotes adiponectin multimerization and systemic glucose homeostasis.; Diabetes, 63: 867-79 |
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GSE36031 |
| Sha, Linna et al. (2026) Effects of aerobic exercise on depression-like behaviors and hippocampal transcriptomics in CSDS-induced adolescent mice.; J Affect Disord, 401: 121280 |
|
GSE315740 |
| Sha, Qiong et al. (2023) Integrative transcriptome- and DNA methylation analysis of brain tissue from the temporal pole in suicide decedents and their controls.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE243356 |
| Sha, Zhou et al. (2026) Dysregulation of macrophage lipid metabolism underlies intracellular bacterial neuroinvasion.; Nat Commun, [no vol.]: [no pages] |
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GSE273820 GSE283713 |
| Shadle, Sean C et al. (2017) DUX4-induced dsRNA and MYC mRNA stabilization activate apoptotic pathways in human cell models of facioscapulohumeral dystrophy.; PLoS Genet, 13: e1006658 |
|
GSE87495 |
| Shadle, Sean C et al. (2019) DUX4-induced bidirectional HSATII satellite repeat transcripts form intranuclear double-stranded RNA foci in human cell models of FSHD.; Hum Mol Genet, 28: 3997-4011 |
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GSE114940 |
| Shadrach, Jennifer L et al. (2021) Translatomic analysis of regenerating and degenerating spinal motor neurons in injury and ALS.; iScience, 24: 102700 |
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GSE162028.2 GSE162028.1 |
| Shafaattalab, Sanam et al. (2019) Ibrutinib Displays Atrial-Specific Toxicity in Human Stem Cell-Derived Cardiomyocytes.; Stem Cell Reports, 12: 996-1006 |
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GSE128688 |
| Shaffer, Arthur L et al. (2008) IRF4 addiction in multiple myeloma.; Nature, 454: 226-31 |
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GSE9031 GSE9067 |
| Shaffer, Sydney M et al. (2020) Memory Sequencing Reveals Heritable Single-Cell Gene Expression Programs Associated with Distinct Cellular Behaviors.; Cell, 182: 947-959.e17 |
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GSE151825 |
| Shafik, Andrew M et al. (2021) N6-methyladenosine dynamics in neurodevelopment and aging, and its potential role in Alzheimer's disease.; Genome Biol, 22: 17 |
|
GSE144032.1.2 GSE144032.1.3 GSE144032.1.4 GSE144032.2 GSE144032.1.1 |
| Shah, Ami et al. (2021) Olfactory expression of trace amine-associated receptors requires cooperative cis-acting enhancers.; Nat Commun, 12: 3797 |
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GSE171241 |
| Shah, Faraaz A et al. (2024) Lung Epithelium Releases Growth Differentiation Factor 15 in Response to Pathogen-mediated Injury.; Am J Respir Cell Mol Biol, 70: 379-391 |
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GSE253234 |
| Shah, Kushani et al. (2020) A chromatin modulator sustains self-renewal and enables differentiation of postnatal neural stem and progenitor cells.; J Mol Cell Biol, 12: 4-16 |
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GSE114091 |
| Shah, Mithun Vinod et al. (2008) Molecular profiling of LGL leukemia reveals role of sphingolipid signaling in survival of cytotoxic lymphocytes.; Blood, 112: 770-81 |
|
GSE10631 |
| Shah, Neel et al. (2017) Regulation of the glucocorticoid receptor via a BET-dependent enhancer drives antiandrogen resistance in prostate cancer.; Elife, 6: [no pages] |
|
GSE103449 |
| Shah, Parisha P et al. (2013) Lamin B1 depletion in senescent cells triggers large-scale changes in gene expression and the chromatin landscape.; Genes Dev, 27: 1787-99 |
|
GSE36640 |
| Shah, Parisha P et al. (2023) An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype.; Genome Biol, 24: 16 |
|
GSE155244 |
| Shah, S M et al. (2009) Expression of Wnt receptors in adult spiral ganglion neurons: frizzled 9 localization at growth cones of regenerating neurites.; Neuroscience, 164: 478-87 |
|
GSE12810 |
| Shah, Shruti D et al. (2023) Syngeneic model of carcinogen-induced tumor mimics basal/squamous, stromal-rich, and neuroendocrine molecular and immunological features of muscle-invasive bladder cancer.; Front Oncol, 13: 1120329 |
|
GSE220999 |
| Shah, Sneha et al. (2023) Antisense oligonucleotide rescue of CGG expansion-dependentFMR1mis-splicing in fragile X syndrome restores FMRP.; Proc Natl Acad Sci U S A, 120: e2302534120 |
|
GSE202177 |
| Shah, Sneha et al. (2026) Metabolic reprogramming during human neuron differentiation indicates glutaminase as a key determinant in Fragile X syndrome.; Cell Rep, 45: 116857 |
|
GSE296077 |
| Shah, Sohela et al. (2013) A recurrent germline PAX5 mutation confers susceptibility to pre-B cell acute lymphoblastic leukemia.; Nat Genet, 45: 1226-31 |
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GSE45260 |
| Shah, Zahir et al. (2025) RUNX1 is a key inducer of human hematopoiesis controlling non-hematopoietic mesodermal development.; Stem Cells, 43: [no pages] |
|
GSE232147 |
| Shahbaz, Shima et al. (2025) Integrated immune, hormonal, and transcriptomic profiling reveals sex-specific dysregulation in long COVID patients with ME/CFS.; Cell Rep Med, 6: 102449 |
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GSE270045 |
| Shahbazi, Ebrahim et al. (2016) Conversion of Human Fibroblasts to Stably Self-Renewing Neural Stem Cells with a Single Zinc-Finger Transcription Factor.; Stem Cell Reports, 6: 539-551 |
|
GSE64882 |
| Shahbazi, Jeyran et al. (2016) The Bromodomain Inhibitor JQ1 and the Histone Deacetylase Inhibitor Panobinostat Synergistically Reduce N-Myc Expression and Induce Anticancer Effects.; Clin Cancer Res, 22: 2534-44 |
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GSE68690 |
| Shahin, Weam S et al. (2023) Redox-dependent Igfbp2 signaling controls Brca1 DNA damage response to govern neural stem cell fate.; Nat Commun, 14: 444 |
|
GSE221955 |
| Shahmanesh, Mohsen et al. (2015) Differential adipose tissue gene expression profiles in abacavir treated patients that may contribute to the understanding of cardiovascular risk: a microarray study.; PLoS One, 10: e0117164 |
|
GSE62117 |
| Shahraz, Anahita et al. (2021) Phagocytosis-related NADPH oxidase 2 subunit gp91phox contributes to neurodegeneration after repeated systemic challenge with lipopolysaccharides.; Glia, 69: 137-150 |
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GSE153369 |
| Shahzad, Uswa et al. (2025) CASCADES, a novel SOX2 super-enhancer-associated long noncoding RNA, regulates cancer stem cell specification and differentiation in glioblastoma.; Mol Oncol, 19: 764-784 |
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GSE157506 |
| Shaikh, Nadeem et al. (2022) Replication stress generates distinctive landscapes of DNA copy number alterations and chromosome scale losses.; Genome Biol, 23: 223 |
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GSE168689 |
| Shaikh, Shafiq et al. (2025) Deciphering the interplay between SETD2 mediated H3K36me3 and RNA N6-methyladenosine in clear cell renal cell carcinoma (ccRCC).; Epigenetics, 20: 2456418 |
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GSE276371 |
| Shaker, Mohammed R et al. (2020) Anteroposterior Wnt-RA Gradient Defines Adhesion and Migration Properties of Neural Progenitors in Developing Spinal Cord.; Stem Cell Reports, 15: 898-911 |
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GSE132089 |
| Shaker, Mohammed R et al. (2021) Klotho inhibits neuronal senescence in human brain organoids.; NPJ Aging Mech Dis, 7: 18 |
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GSE171719 |
| Shaker, Mohammed R et al. (2024) Choroid plexus defects in Down syndrome brain organoids enhance neurotropism of SARS-CoV-2.; Sci Adv, 10: eadj4735 |
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GSE208440 GSE208575 |
| Shakhova, Olga et al. (2012) Sox10 promotes the formation and maintenance of giant congenital naevi and melanoma.; Nat Cell Biol, 14: 882-90 |
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GSE37059 |
| Shaknovich, Rita et al. (2010) DNA methylation signatures define molecular subtypes of diffuse large B-cell lymphoma.; Blood, 116: e81-9 |
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GSE23501 |
| Shalhoub, V et al. (2010) Chondro/osteoblastic and cardiovascular gene modulation in human artery smooth muscle cells that calcify in the presence of phosphate and calcitriol or paricalcitol.; J Cell Biochem, 111: 911-21 |
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GSE11917 |
| Shaliman, Dilibaerguli et al. (2022) The PRC2 molecule EED is a target of epigenetic therapy for neuroblastoma.; Eur J Cell Biol, 101: 151238 |
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GSE183369 |
| Shalom-Barak, Tali et al. (2012) Placental PPAR? regulates spatiotemporally diverse genes and a unique metabolic network.; Dev Biol, 372: 143-55 |
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GSE39233 |
| Shalova, Irina N et al. (2015) Human monocytes undergo functional re-programming during sepsis mediated by hypoxia-inducible factor-1?.; Immunity, 42: 484-98 |
|
GSE46955 |
| Shames, David S et al. (2006) A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies.; PLoS Med, 3: e486 |
|
GSE5816 |
| Shamir, Ron et al. (2017) Analysis of blood-based gene expression in idiopathic Parkinson disease.; Neurology, 89: 1676-1683 |
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GSE99039 |
| Shamji, M H et al. (2015) Effector cell signature in peripheral blood following nasal allergen challenge in grass pollen allergic individuals.; Allergy, 70: 171-9 |
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GSE43497 |
| Shams, Ahmed S et al. (2022) The chemokine receptor CXCR4 regulates satellite cell activation, early expansion, and self-renewal, in response to skeletal muscle injury.; Front Cell Dev Biol, 10: 949532 |
|
GSE205015 |
| Shan, Xiaoyin et al. (2017) Transcriptional and Cell Cycle Alterations Mark Aging of Primary Human Adipose-Derived Stem Cells.; Stem Cells, 35: 1392-1401 |
|
GSE86244 |
| Shan, Xiu et al. (2010) Altered distributions of Gemini of coiled bodies and mitochondria in motor neurons of TDP-43 transgenic mice.; Proc Natl Acad Sci U S A, 107: 16325-30 |
|
GSE22351 |
| Shan, Xiwei et al. (2024) Fully defined NGN2 neuron protocol reveals diverse signatures of neuronal maturation.; Cell Rep Methods, 4: 100858 |
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GSE273553 GSE266359 GSE244369 |
| Shan, Yongli et al. (2020) JMJD3 and UTX determine fidelity and lineage specification of human neural progenitor cells.; Nat Commun, 11: 382 |
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GSE118999 |
| Shand, Jessica C et al. (2010) Differential gene expression in acute lymphoblastic leukemia cells surviving allogeneic transplant.; Cancer Immunol Immunother, 59: 1633-44 |
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GSE17497 |
| Shang, Hongkai et al. (2021) Characterization of the Potential Role of NTPCR in Epithelial Ovarian Cancer by Integrating Transcriptomic and Metabolomic Analysis.; Front Genet, 12: 695245 |
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GSE178486 |
| Shang, Qi et al. (2022) Myristic acid alleviates hippocampal aging correlated with GABAergic signaling.; Front Nutr, 9: 907526 |
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GSE201029 |
| Shang, Yuan et al. (2020) Evidence in support of chromosomal sex influencing plasma based metabolome vs APOE genotype influencing brain metabolome profile in humanized APOE male and female mice.; PLoS One, 15: e0225392 |
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GSE140205 |
| Shankar, Jay et al. (2010) Pseudopodial actin dynamics control epithelial-mesenchymal transition in metastatic cancer cells.; Cancer Res, 70: 3780-90 |
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GSE20089 |
| Shankar, Kartik et al. (2006) Physiologic and genomic analyses of nutrition-ethanol interactions during gestation: Implications for fetal ethanol toxicity.; Exp Biol Med (Maywood), 231: 1379-97 |
|
GSE3740 |
| Shankavaram, Uma et al. (2013) Genotype and tumor locus determine expression profile of pseudohypoxic pheochromocytomas and paragangliomas.; Neoplasia, 15: 435-47 |
|
GSE39716 |
| Shanle, Erin K et al. (2013) Research resource: global identification of estrogen receptor β target genes in triple negative breast cancer cells.; Mol Endocrinol, 27: 1762-75 |
|
GSE71960 |
| Shanley, Thomas P et al. (2007) Genome-level longitudinal expression of signaling pathways and gene networks in pediatric septic shock.; Mol Med, 13: 495-508 |
|
GSE8121 |
| Shao, Anwen et al. (2023) The L27 Domain of MPP7 enhances TAZ-YY1 Cooperation to Renew Muscle Stem Cells.; bioRxiv, [no vol.]: [no pages] |
|
GSE241340 |
| Shao, Chunbo et al. (2011) Integrated, genome-wide screening for hypomethylated oncogenes in salivary gland adenoid cystic carcinoma.; Clin Cancer Res, 17: 4320-30 |
|
GSE25746 |
| Shao, Diane D et al. (2014) KRAS and YAP1 converge to regulate EMT and tumor survival.; Cell, 158: 171-84 |
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GSE55942 GSE56175 |
| Shao, Luying et al. (2024) Active natural compounds perturb the melanoma risk-gene network.; G3 (Bethesda), 14: [no pages] |
|
GSE246383 |
| Shao, Meiyu et al. (2024) Transcriptome signatures of the medial prefrontal cortex underlying GABAergic control of resilience to chronic stress exposure.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE272496 |
| Shao, Yingyao et al. (2021) Antisense oligonucleotide therapy in a humanized mouse model ofMECP2duplication syndrome.; Sci Transl Med, 13: [no pages] |
|
GSE151222 |
| Shao, Yu et al. (2019) Loss ofNmp4optimizes osteogenic metabolism and secretion to enhance bone quality.; Am J Physiol Endocrinol Metab, 316: E749-E772 |
|
GSE112694 |
| Shao, Zhicheng et al. (2019) Dysregulated protocadherin-pathway activity as an intrinsic defect in induced pluripotent stem cell-derived cortical interneurons from subjects with schizophrenia.; Nat Neurosci, 22: 229-242 |
|
GSE121376 GSE118313 |
| Shao, Zhihua et al. (2017) Spontaneous generation of a novel foetal human retinal pigment epithelium (RPE) cell line available for investigation on phagocytosis and morphogenesis.; Cell Prolif, 50: [no pages] |
|
GSE102875 |
| Shapira, Guy et al. (2023) Hippocampal differential expression underlying the neuroprotective effect of delta-9-tetrahydrocannabinol microdose on old mice.; Front Neurosci, 17: 1182932 |
|
GSE235969 |
| Shapira, Guy et al. (2025) ADNP is essential for sex-dependent hippocampal neurogenesis, through male unfolded protein response and female mitochondrial gene regulation.; Mol Psychiatry, 30: 2696-2706 |
|
GSE272331 |
| Shapira, Sagi D et al. (2009) A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection.; Cell, 139: 1255-67 |
|
GSE19392 |
| Sharanek, Ahmad et al. (2021) Transcriptional control of brain tumor stem cells by a carbohydrate binding protein.; Cell Rep, 36: 109647 |
|
GSE180981 |
| Sharif, Momal et al. (2026) Loss of the maternal effect gene NLRP2 impairs embryonic and extra-embryonic development, revealing a novel genetic cause of congenital anomalies†.; Biol Reprod, 114: 1469-1485 |
|
GSE274909 |
| Sharifi, Osman et al. (2025) Female cortical cellular mosaicism underlies shared MeCP2 and PCB impacted gene pathways.; bioRxiv, [no vol.]: [no pages] |
|
GSE316011 |
| Sharma, Abhijeet et al. (2019) Divergent roles of astrocytic versus neuronal EAAT2 deficiency on cognition and overlap with aging and Alzheimer's molecular signatures.; Proc Natl Acad Sci U S A, 116: 21800-21811 |
|
GSE169083 |
| Sharma, Aditi et al. (2021) E-cigarettes compromise the gut barrier and trigger inflammation.; iScience, 24: 102035 |
|
GSE161521 |
| Sharma, Ali et al. (2016) Principles Governing DNA Methylation during Neuronal Lineage and Subtype Specification.; J Neurosci, 36: 1711-22 |
|
GSE72700 |