List of all 17,669 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Adusumilli, Vijay S et al. (2021) ROS Dynamics Delineate Functional States of Hippocampal Neural Stem Cells and Link to Their Activity-Dependent Exit from Quiescence.; Cell Stem Cell, 28: 300-314.e6 |
|
GSE123960 GSE123961 |
| Aersilan, Alimasi et al. (2022) MicroRNA-874 targets phosphomevalonate kinase and inhibits cancer cell growth via the mevalonate pathway.; Sci Rep, 12: 18443 |
|
GSE214507 |
| Aevermann, Brian D et al. (2014) A comprehensive collection of systems biology data characterizing the host response to viral infection.; Sci Data, 1: 140033 |
|
GSE49263 |
| Affaneh, Amira et al. (2025) Inhibition of Bone Morphogenetic Protein Signaling Prevents Tau Pathology in iPSC Derived Neurons and PS19 Mice.; Ann Neurol, 97: 657-672 |
|
GSE253647 |
| Affer, M et al. (2011) Gene Expression Differences between Enriched Normal and Chronic Myelogenous Leukemia Quiescent Stem/Progenitor Cells and Correlations with Biological Abnormalities.; J Oncol, 2011: 798592 |
|
GSE24739 |
| Affinati, Alison H et al. (2021) Cross-species analysis defines the conservation of anatomically segregated VMH neuron populations.; Elife, 10: [no pages] |
|
GSE172206 GSE172202 GSE172200 |
| Affymetrix ENCODE Transcriptome Project et al. (2009) Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.; Nature, 457: 1028-32 |
|
GSE14362 |
| Affò, Silvia et al. (2013) Transcriptome analysis identifies TNF superfamily receptors as potential therapeutic targets in alcoholic hepatitis.; Gut, 62: 452-60 |
|
GSE28619 |
| Africano, Chiara et al. (2024) Identification of a histone deacetylase inhibitor as a therapeutic candidate for congenital central hypoventilation syndrome.; Mol Ther Nucleic Acids, 35: 102319 |
|
GSE250244 |
| Afsahi, Arya et al. (2023) LCL161 enhances expansion and survival of engineered anti-tumor T cells but is restricted by death signaling.; Front Immunol, 14: 1179827 |
|
GSE227986 |
| Afshar, Yalda et al. (2024) Placenta accreta spectrum disorder at single-cell resolution: a loss of boundary limits in the decidua and endothelium.; Am J Obstet Gynecol, 230: 443.e1-443.e18 |
|
GSE212505 |
| Afshari, Parisa et al. (2017) Reduced Slc1a1 expression is associated with neuroinflammation and impaired sensorimotor gating and cognitive performance in mice: Implications for schizophrenia.; PLoS One, 12: e0183854 |
|
GSE103194 |
| Agak, George W et al. (2021) Extracellular traps released by antimicrobial TH17 cells contribute to host defense.; J Clin Invest, 131: [no pages] |
|
GSE144852 |
| Agarwal, Pujya et al. (2009) Gene regulation and chromatin remodeling by IL-12 and type I IFN in programming for CD8 T cell effector function and memory.; J Immunol, 183: 1695-704 |
|
GSE15930 |
| Agarwal, Rishu et al. (2019) Dynamic molecular monitoring reveals that SWI-SNF mutations mediate resistance to ibrutinib plus venetoclax in mantle cell lymphoma.; Nat Med, 25: 119-129 |
|
GSE122509 |
| Agarwal, Saurabh et al. (2015) Sequencing of first-strand cDNA library reveals full-length transcriptomes.; Nat Commun, 6: 6002 |
|
GSE63424 |
| Agarwal, Saurabh et al. (2018) MYCN acts as a direct co-regulator of p53 in MYCN amplified neuroblastoma.; Oncotarget, 9: 20323-20338 |
|
GSE83327 |
| Agca, Cansu et al. (2013) Estrus synchronization and ovarian hyper-stimulation treatments have negligible effects on cumulus oocyte complex gene expression whereas induction of ovulation causes major expression changes.; Mol Reprod Dev, 80: 102-17 |
|
GSE41836 |
| Agell, Laia et al. (2012) A 12-gene expression signature is associated with aggressive histological in prostate cancer: SEC14L1 and TCEB1 genes are potential markers of progression.; Am J Pathol, 181: 1585-94 |
|
GSE30521 |
| Agesen, Trude H et al. (2012) ColoGuideEx: a robust gene classifier specific for stage II colorectal cancer prognosis.; Gut, 61: 1560-7 |
|
GSE29638 |
| Aggarwal, Shikhar et al. (2024) SOX9 switch links regeneration to fibrosis at the single-cell level in mammalian kidneys.; Science, 383: eadd6371 |
|
GSE196929 |
| Aghajanova, L et al. (2011) Unique transcriptome, pathways, and networks in the human endometrial fibroblast response to progesterone in endometriosis.; Biol Reprod, 84: 801-15 |
|
GSE35287 |
| Aghajanova, Lusine et al. (2010) The protein kinase A pathway-regulated transcriptome of endometrial stromal fibroblasts reveals compromised differentiation and persistent proliferative potential in endometriosis.; Endocrinology, 151: 1341-55 |
|
GSE17504 |
| Aghapour, Mahyar et al. (2025) Traumatic Brain Injury Induces Early Barrier Protective Responses in Incisional Skin Wounds Accelerating Cutaneous Wound Healing.; Wound Repair Regen, 33: e70079 |
|
GSE288594 |
| Agidigbi, Taiwo Samuel et al. (2023) Transcriptomic identification of genes expressed in invasiveS. aureusdiabetic foot ulcer infection.; Front Cell Infect Microbiol, 13: 1198115 |
|
GSE230426 |
| Agis-Balboa, Roberto Carlos et al. (2011) A hippocampal insulin-growth factor 2 pathway regulates the extinction of fear memories.; EMBO J, 30: 4071-83 |
|
GSE31063 |
| Agnelli, Luca et al. (2005) Molecular classification of multiple myeloma: a distinct transcriptional profile characterizes patients expressing CCND1 and negative for 14q32 translocations.; J Clin Oncol, 23: 7296-306 |
|
GSE2912 |
| Agnelli, Luca et al. (2007) Integrative genomic analysis reveals distinct transcriptional and genetic features associated with chromosome 13 deletion in multiple myeloma.; Haematologica, 92: 56-65 |
|
GSE6365 |
| Agnelli, Luca et al. (2007) Upregulation of translational machinery and distinct genetic subgroups characterise hyperdiploidy in multiple myeloma.; Br J Haematol, 136: 565-73 |
|
GSE6401 |
| Agnihotri, Sameer et al. (2016) The genomic landscape of schwannoma.; Nat Genet, 48: 1339-1348 |
|
GSE81145 |
| Agostini, Julie et al. (2012) Identification of molecular pathways involved in oxaliplatin-associated sinusoidal dilatation.; J Hepatol, 56: 869-76 |
|
GSE32384 |
| Agostoni, Elena et al. (2016) Effects of Pin1 Loss in Hdh(Q111) Knock-in Mice.; Front Cell Neurosci, 10: 110 |
|
GSE64478 |
| Agudo, Marta et al. (2008) Time course profiling of the retinal transcriptome after optic nerve transection and optic nerve crush.; Mol Vis, 14: 1050-63 |
|
GSE9918 |
| Aguerri, M et al. (2013) Differential gene-expression analysis defines a molecular pattern related to olive pollen allergy.; J Biol Regul Homeost Agents, 27: 337-50 |
|
GSE37157 |
| Aguiar, Jennifer A et al. (2019) Transcriptomic and barrier responses of human airway epithelial cells exposed to cannabis smoke.; Physiol Rep, 7: e14249 |
|
GSE125259 |
| Aguila, Julio et al. (2021) Spatial RNA Sequencing Identifies Robust Markers of Vulnerable and Resistant Human Midbrain Dopamine Neurons and Their Expression in Parkinson's Disease.; Front Mol Neurosci, 14: 699562 |
|
GSE114918 |
| Aguilar-Arnal, Lorena et al. (2013) Cycles in spatial and temporal chromosomal organization driven by the circadian clock.; Nat Struct Mol Biol, 20: 1206-13 |
|
GSE49638 |
| Aguilera, Concepción M et al. (2015) Genome-wide expression in visceral adipose tissue from obese prepubertal children.; Int J Mol Sci, 16: 7723-37 |
|
GSE9624 |
| Aguilera-Montilla, Noemí et al. (2013) Aryl hydrocarbon receptor contributes to the MEK/ERK-dependent maintenance of the immature state of human dendritic cells.; Blood, 121: e108-17 |
|
GSE39745 |
| Agustinus, Albert S et al. (2023) Epigenetic dysregulation from chromosomal transit in micronuclei.; Nature, [no vol.]: [no pages] |
|
GSE188644 |
| Agís-Balboa, Roberto Carlos et al. (2017) Formin 2 links neuropsychiatric phenotypes at young age to an increased risk for dementia.; EMBO J, 36: 2815-2828 |
|
GSE100070 |
| Ahad, Abdul et al. (2019) NCoR1: Putting the Brakes on the Dendritic Cell Immune Tolerance.; iScience, 19: 996-1011 |
|
GSE110422 |
| Ahlfors, Helena et al. (2010) SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation.; Blood, 116: 1443-53 |
|
GSE17241.3 GSE17241.1 GSE17241.2 |
| Ahlfors, Helena et al. (2019) Gene expression dysregulation domains are not a specific feature of Down syndrome.; Nat Commun, 10: 2489 |
|
GSE109294 |
| Ahmad, Ijaz et al. (2024) Exploring the Role of Platelets in Virus-Induced Inflammatory Demyelinating Disease and Myocarditis.; Int J Mol Sci, 25: [no pages] |
|
GSE253385 |
| Ahmad, R et al. (2014) Targeted colonic claudin-2 expression renders resistance to epithelial injury, induces immune suppression, and protects from colitis.; Mucosal Immunol, 7: 1340-53 |
|
GSE46006 |
| Ahmari, Niousha et al. (2016) Loss of bone marrow adrenergic beta 1 and 2 receptors modifies transcriptional networks, reduces circulating inflammatory factors, and regulates blood pressure.; Physiol Genomics, 48: 526-36 |
|
GSE71631 |
| Ahmed, Ahmed Ashour et al. (2007) The extracellular matrix protein TGFBI induces microtubule stabilization and sensitizes ovarian cancers to paclitaxel.; Cancer Cell, 12: 514-27 |
|
GSE9455 |
| Ahmed, Mohammed H et al. (2023) Low-Intensity Pulsed Ultrasound-Mediated Blood-Brain Barrier Opening Increases Anti-Programmed Death-Ligand 1 Delivery and Efficacy in Gl261 Mouse Model.; Pharmaceutics, 15: [no pages] |
|
GSE220909 |
| Ahmed, Mohi et al. (2021) The chromatin remodelling factor Chd7 protects auditory neurons and sensory hair cells from stress-induced degeneration.; Commun Biol, 4: 1260 |
|
GSE163798 |
| Ahmed, Oumaima et al. (2025) O-GlcNAcylation of FOXK1 co-opts BAP1 to orchestrate the E2F pathway and promotes oncogenesis.; Nat Commun, 16: 5959 |
|
GSE260904 |
| Ahmed, Raies et al. (2021) Transgenic mice with an R342X mutation in Phf6 display clinical features of Börjeson-Forssman-Lehmann Syndrome.; Hum Mol Genet, 30: 575-594 |
|
GSE156404 |
| Ahmed, Serge H et al. (2005) Gene expression evidence for remodeling of lateral hypothalamic circuitry in cocaine addiction.; Proc Natl Acad Sci U S A, 102: 11533-8 |
|
GSE3016 |
| Ahmed, Umair et al. (2022) Ultrasound Neuromodulation of the Spleen Has Time-Dependent Anti-Inflammatory Effect in a Pneumonia Model.; Front Immunol, 13: 892086 |
|
GSE197466 |
| Ahn, Jihae et al. (2025) 4-1BB stimulation with concomitant inactivation of adenosine A2B receptors enhances CD8+ T cell antitumor response.; J Clin Invest, 135: [no pages] |
|
GSE222286 |
| Ahn, Soyoun et al. (2021) A role of anterior cingulate cortex in the emergence of worker-parasite relationship.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE153649 |
| Ahn, Sun Hee et al. (2013) Gene expression-based classifiers identify Staphylococcus aureus infection in mice and humans.; PLoS One, 8: e48979 |
|
GSE33341.2 GSE33341.1 |
| Ahn, Sun-Hee et al. (2010) Two genes on A/J chromosome 18 are associated with susceptibility to Staphylococcus aureus infection by combined microarray and QTL analyses.; PLoS Pathog, 6: e1001088 |
|
GSE19668 |
| Ahrends, Tomasz et al. (2021) Enteric pathogens induce tissue tolerance and prevent neuronal loss from subsequent infections.; Cell, 184: 5715-5727.e12 |
|
GSE182294 |
| Ahrens, Richard et al. (2008) Intestinal macrophage/epithelial cell-derived CCL11/eotaxin-1 mediates eosinophil recruitment and function in pediatric ulcerative colitis.; J Immunol, 181: 7390-9 |
|
GSE10191 |
| Ahrens, Sandra et al. (2018) A Central Extended Amygdala Circuit That Modulates Anxiety.; J Neurosci, 38: 5567-5583 |
|
GSE113979 |
| Ahuja, K et al. (2024) A deep phenotyping study in mouse and iPSC models to understand the role of oligodendroglia in optic neuropathy in Wolfram syndrome.; Acta Neuropathol Commun, 12: 140 |
|
GSE264222 |
| Ahuja, Manuj et al. (2021) Bach1 derepression is neuroprotective in a mouse model of Parkinson's disease.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE164412 |
| Ai, Ruixue et al. (2025) NAD+reverses Alzheimer's neurological deficits via regulating differential alternative RNA splicing ofEVA1C.; Sci Adv, 11: eady9811 |
|
GSE279334 |
| Ai, Shenjian et al. (2024) CCR2 restricts IFN-γ production by hippocampal CD8 TRM cells that impair learning and memory during recovery from WNV encephalitis.; J Neuroinflammation, 21: 330 |
|
GSE277049 GSE277152 GSE277155 |
| Aiba, Kazuhiro et al. (2006) Defining a developmental path to neural fate by global expression profiling of mouse embryonic stem cells and adult neural stem/progenitor cells.; Stem Cells, 24: 889-95 |
|
GSE4076 GSE4075 |
| Aiba, Kazuhiro et al. (2009) Defining developmental potency and cell lineage trajectories by expression profiling of differentiating mouse embryonic stem cells.; DNA Res, 16: 73-80 |
|
GSE11523 |
| Aibara, Daisuke et al. (2022) Gene repression through epigenetic modulation by PPARA enhances hepatocellular proliferation.; iScience, 25: 104196 |
|
GSE154277 |
| Aihara, Shuhei et al. (2021) BMPR-2 gates activity-dependent stabilization of primary dendrites during mitral cell remodeling.; Cell Rep, 35: 109276 |
|
GSE171875 |
| Aijö, Tarmo et al. (2012) An integrative computational systems biology approach identifies differentially regulated dynamic transcriptome signatures which drive the initiation of human T helper cell differentiation.; BMC Genomics, 13: 572 |
|
GSE32959 |
| Aikawa, Tomonori et al. (2015) Loss of MyD88 alters neuroinflammatory response and attenuates early Purkinje cell loss in a spinocerebellar ataxia type 6 mouse model.; Hum Mol Genet, 24: 4780-91 |
|
GSE61908 |
| Aikawa, Tomonori et al. (2019) ABCA7 haplodeficiency disturbs microglial immune responses in the mouse brain.; Proc Natl Acad Sci U S A, 116: 23790-23796 |
|
GSE139592 |
| Aimone, James B et al. (2004) Spatial and temporal gene expression profiling of the contused rat spinal cord.; Exp Neurol, 189: 204-21 |
|
GSE2599 |
| Ainooson, George K et al. (2018) Transcriptomic data on the role of PEST-domain-enriched tyrosine phosphatase in the regulation of antigen-mediated activation and antiallergic action of glucocorticoids in mast cells.; Data Brief, 20: 1177-1183 |
|
GSE108972 |
| Ajikumar, Anjana et al. (2019) Neutrophil-Derived Microvesicle Induced Dysfunction of Brain Microvascular Endothelial Cells In Vitro.; Int J Mol Sci, 20: [no pages] |
|
GSE137111 |
| Ajiro, Masahiko et al. (2021) Therapeutic manipulation of IKBKAP mis-splicing with a small molecule to cure familial dysautonomia.; Nat Commun, 12: 4507 |
|
GSE161109 |
| Akagi, Tadayuki et al. (2010) In vivo deficiency of both C/EBPβ and C/EBPε results in highly defective myeloid differentiation and lack of cytokine response.; PLoS One, 5: e15419 |
|
GSE23821 |
| Akahoshi, Noriyuki et al. (2007) Increased expression of the lysosomal protease cathepsin S in hippocampal microglia following kainate-induced seizures.; Neurosci Lett, 429: 136-41 |
|
GSE6388 |
| Akahoshi, Noriyuki et al. (2011) Frequent spontaneous seizures followed by spatial working memory/anxiety deficits in mice lacking sphingosine 1-phosphate receptor 2.; Epilepsy Behav, 22: 659-65 |
|
GSE7191 |
| Akanuma, Hiromi et al. (2012) Identification of Stage-Specific Gene Expression Signatures in Response to Retinoic Acid during the Neural Differentiation of Mouse Embryonic Stem Cells.; Front Genet, 3: 141 |
|
GSE37602 |
| Akavia, Uri David et al. (2010) An integrated approach to uncover drivers of cancer.; Cell, 143: 1005-17 |
|
GSE23884 |
| Akbari Moqadam, F et al. (2013) MiR-125b, miR-100 and miR-99a co-regulate vincristine resistance in childhood acute lymphoblastic leukemia.; Leuk Res, 37: 1315-21 |
|
GSE46362 |
| Akbay, Esra A et al. (2014) D-2-hydroxyglutarate produced by mutant IDH2 causes cardiomyopathy and neurodegeneration in mice.; Genes Dev, 28: 479-90 |
|
GSE54838 |
| Akbor, Maruf Mohammad et al. (2021) Polymorphic SERPINA3 prolongs oligomeric state of amyloid beta.; PLoS One, 16: e0248027 |
|
GSE164731 |
| Akerberg, Brynn N et al. (2019) A reference map of murine cardiac transcription factor chromatin occupancy identifies dynamic and conserved enhancers.; Nat Commun, 10: 4907 |
|
GSE124008 |
| Akerblad, Peter et al. (2005) Gene expression analysis suggests that EBF-1 and PPARgamma2 induce adipogenesis of NIH-3T3 cells with similar efficiency and kinetics.; Physiol Genomics, 23: 206-16 |
|
GSE2192 |
| Akhtar, Waseem et al. (2013) Chromatin position effects assayed by thousands of reporters integrated in parallel.; Cell, 154: 914-27 |
|
GSE48607 |
| Aki, Daisuke et al. (2024) The Nr4a family regulates intrahepatic Treg proliferation and liver fibrosis in MASLD models.; J Clin Invest, 134: [no pages] |
|
GSE241657 |
| Akiho, Hirotada et al. (2014) Involvement of interleukin-17A-induced hypercontractility of intestinal smooth muscle cells in persistent gut motor dysfunction.; PLoS One, 9: e92960 |
|
GSE39573 |
| Akimoto, Masayuki et al. (2006) Targeting of GFP to newborn rods by Nrl promoter and temporal expression profiling of flow-sorted photoreceptors.; Proc Natl Acad Sci U S A, 103: 3890-5 |
|
GSE4051 |
| Akin, Debra et al. (2016) RNA-seq analysis of impact of PNN on gene expression and alternative splicing in corneal epithelial cells.; Mol Vis, 22: 40-60 |
|
GSE73060 |