List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Adhicary, Subhodip et al. (2023) Rbpj Deficiency Disrupts Vascular Remodeling via Abnormal Apelin and Cdc42 (Cell Division Cycle 42) Activity in Brain Arteriovenous Malformation.; Stroke, 54: 1593-1605 |
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GSE223531 |
| Adikusuma, Fatwa et al. (2017) Functional Equivalence of the SOX2 and SOX3 Transcription Factors in the Developing Mouse Brain and Testes.; Genetics, 206: 1495-1503 |
|
GSE96805 |
| Aditi, Downing, Susanna M et al. (2021) Genome instability independent of type I interferon signaling drives neuropathology caused by impaired ribonucleotide excision repair.; Neuron, [no vol.]: [no pages] |
|
GSE181159 |
| Adjei, Nasser et al. (2025) RNA Sequencing Identified Differentially Expressed Genes in the Mesocorticolimbic and Nigrostriatal Systems of Compulsive METH-Taking Rats.; Cells, 14: [no pages] |
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GSE301346 |
| Adkins-Threats, Mahliyah et al. (2024) Metabolic regulator ERRγ governs gastric stem cell differentiation into acid-secreting parietal cells.; Cell Stem Cell, 31: 886-903.e8 |
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GSE234777 |
| Adlanmerini, Marine et al. (2014) Mutation of the palmitoylation site of estrogen receptor ? in vivo reveals tissue-specific roles for membrane versus nuclear actions.; Proc Natl Acad Sci U S A, 111: E283-90 |
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GSE53237 |
| Adlanmerini, Marine et al. (2020) Hypothalamic REV-ERB nuclear receptors control diurnal food intake and leptin sensitivity in diet-induced obese mice.; J Clin Invest, [no vol.]: [no pages] |
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GSE148644.1 GSE148644.2 |
| Adrian, Max et al. (2023) Polarized microtubule remodeling transforms the morphology of reactive microglia and drives cytokine release.; Nat Commun, 14: 6322 |
|
GSE238210 |
| Adrianse, Robin L et al. (2018) Perturbed maintenance of transcriptional repression on the inactive X-chromosome in the mouse brain after Xist deletion.; Epigenetics Chromatin, 11: 50 |
|
GSE119066 |
| Adusumilli, Lavanya et al. (2020) miR-7Controls the Dopaminergic/Oligodendroglial Fate through Wnt/?-catenin Signaling Regulation.; Cells, 9: [no pages] |
|
GSE128011 |
| Adusumilli, Vijay S et al. (2021) ROS Dynamics Delineate Functional States of Hippocampal Neural Stem Cells and Link to Their Activity-Dependent Exit from Quiescence.; Cell Stem Cell, 28: 300-314.e6 |
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GSE123960 GSE123961 |
| Aersilan, Alimasi et al. (2022) MicroRNA-874 targets phosphomevalonate kinase and inhibits cancer cell growth via the mevalonate pathway.; Sci Rep, 12: 18443 |
|
GSE214507 |
| Aevermann, Brian D et al. (2014) A comprehensive collection of systems biology data characterizing the host response to viral infection.; Sci Data, 1: 140033 |
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GSE49262 GSE43204 GSE40792 GSE40824 GSE43203 GSE51386 GSE50878 GSE43302 GSE37572 |
| Affaneh, Amira et al. (2025) Inhibition of Bone Morphogenetic Protein Signaling Prevents Tau Pathology in iPSC Derived Neurons and PS19 Mice.; Ann Neurol, 97: 657-672 |
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GSE253647 |
| Affer, M et al. (2011) Gene Expression Differences between Enriched Normal and Chronic Myelogenous Leukemia Quiescent Stem/Progenitor Cells and Correlations with Biological Abnormalities.; J Oncol, 2011: 798592 |
|
GSE24739 |
| Affinati, Alison H et al. (2021) Cross-species analysis defines the conservation of anatomically segregated VMH neuron populations.; Elife, 10: [no pages] |
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GSE172202 GSE172206 GSE172200 |
| Affymetrix ENCODE Transcriptome Project et al. (2009) Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.; Nature, 457: 1028-32 |
|
GSE14362 |
| Affò, Silvia et al. (2013) Transcriptome analysis identifies TNF superfamily receptors as potential therapeutic targets in alcoholic hepatitis.; Gut, 62: 452-60 |
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GSE28619 |
| Africano, Chiara et al. (2024) Identification of a histone deacetylase inhibitor as a therapeutic candidate for congenital central hypoventilation syndrome.; Mol Ther Nucleic Acids, 35: 102319 |
|
GSE250244 |
| Afsahi, Arya et al. (2023) LCL161 enhances expansion and survival of engineered anti-tumor T cells but is restricted by death signaling.; Front Immunol, 14: 1179827 |
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GSE227986 |
| Afshar, Yalda et al. (2024) Placenta accreta spectrum disorder at single-cell resolution: a loss of boundary limits in the decidua and endothelium.; Am J Obstet Gynecol, 230: 443.e1-443.e18 |
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GSE212505 |
| Afshar-Saber, Wardiya et al. (2025) Neuronal hyperactivity becomes mTORC1 independent due to transcriptional changes in tuberous sclerosis complex disease models.; Cell Rep, 44: 116664 |
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GSE286949 |
| Afshari, Parisa et al. (2017) Reduced Slc1a1 expression is associated with neuroinflammation and impaired sensorimotor gating and cognitive performance in mice: Implications for schizophrenia.; PLoS One, 12: e0183854 |
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GSE103194 |
| Agak, George W et al. (2021) Extracellular traps released by antimicrobial TH17 cells contribute to host defense.; J Clin Invest, 131: [no pages] |
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GSE144852 |
| Agarwal, Pujya et al. (2009) Gene regulation and chromatin remodeling by IL-12 and type I IFN in programming for CD8 T cell effector function and memory.; J Immunol, 183: 1695-704 |
|
GSE15930 |
| Agarwal, Rishu et al. (2019) Dynamic molecular monitoring reveals that SWI-SNF mutations mediate resistance to ibrutinib plus venetoclax in mantle cell lymphoma.; Nat Med, 25: 119-129 |
|
GSE122509 |
| Agarwal, Saurabh et al. (2015) Sequencing of first-strand cDNA library reveals full-length transcriptomes.; Nat Commun, 6: 6002 |
|
GSE63424 |
| Agarwal, Saurabh et al. (2018) MYCN acts as a direct co-regulator of p53 in MYCN amplified neuroblastoma.; Oncotarget, 9: 20323-20338 |
|
GSE83327 |
| Agca, Cansu et al. (2013) Estrus synchronization and ovarian hyper-stimulation treatments have negligible effects on cumulus oocyte complex gene expression whereas induction of ovulation causes major expression changes.; Mol Reprod Dev, 80: 102-17 |
|
GSE41836 |
| Agell, Laia et al. (2012) A 12-gene expression signature is associated with aggressive histological in prostate cancer: SEC14L1 and TCEB1 genes are potential markers of progression.; Am J Pathol, 181: 1585-94 |
|
GSE30521 |
| Agesen, Trude H et al. (2012) ColoGuideEx: a robust gene classifier specific for stage II colorectal cancer prognosis.; Gut, 61: 1560-7 |
|
GSE29638 |
| Aggarwal, Shikhar et al. (2024) SOX9 switch links regeneration to fibrosis at the single-cell level in mammalian kidneys.; Science, 383: eadd6371 |
|
GSE196929 |
| Aghajanova, L et al. (2011) Unique transcriptome, pathways, and networks in the human endometrial fibroblast response to progesterone in endometriosis.; Biol Reprod, 84: 801-15 |
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GSE35287 |
| Aghajanova, Lusine et al. (2010) The protein kinase A pathway-regulated transcriptome of endometrial stromal fibroblasts reveals compromised differentiation and persistent proliferative potential in endometriosis.; Endocrinology, 151: 1341-55 |
|
GSE17504 |
| Aghapour, Mahyar et al. (2025) Traumatic Brain Injury Induces Early Barrier Protective Responses in Incisional Skin Wounds Accelerating Cutaneous Wound Healing.; Wound Repair Regen, 33: e70079 |
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GSE288594 |
| Agidigbi, Taiwo Samuel et al. (2023) Transcriptomic identification of genes expressed in invasiveS. aureusdiabetic foot ulcer infection.; Front Cell Infect Microbiol, 13: 1198115 |
|
GSE230426 |
| Agis-Balboa, Roberto Carlos et al. (2011) A hippocampal insulin-growth factor 2 pathway regulates the extinction of fear memories.; EMBO J, 30: 4071-83 |
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GSE31063 |
| Agnelli, Luca et al. (2005) Molecular classification of multiple myeloma: a distinct transcriptional profile characterizes patients expressing CCND1 and negative for 14q32 translocations.; J Clin Oncol, 23: 7296-306 |
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GSE2912 |
| Agnelli, Luca et al. (2007) Integrative genomic analysis reveals distinct transcriptional and genetic features associated with chromosome 13 deletion in multiple myeloma.; Haematologica, 92: 56-65 |
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GSE6365 |
| Agnelli, Luca et al. (2007) Upregulation of translational machinery and distinct genetic subgroups characterise hyperdiploidy in multiple myeloma.; Br J Haematol, 136: 565-73 |
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GSE6401 |
| Agnihotri, Sameer et al. (2016) The genomic landscape of schwannoma.; Nat Genet, 48: 1339-1348 |
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GSE81145 |
| Agostini, Julie et al. (2012) Identification of molecular pathways involved in oxaliplatin-associated sinusoidal dilatation.; J Hepatol, 56: 869-76 |
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GSE32384 |
| Agostoni, Elena et al. (2016) Effects of Pin1 Loss in Hdh(Q111) Knock-in Mice.; Front Cell Neurosci, 10: 110 |
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GSE64478 |
| Agudo, Marta et al. (2008) Time course profiling of the retinal transcriptome after optic nerve transection and optic nerve crush.; Mol Vis, 14: 1050-63 |
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GSE9918 |
| Aguerri, M et al. (2013) Differential gene-expression analysis defines a molecular pattern related to olive pollen allergy.; J Biol Regul Homeost Agents, 27: 337-50 |
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GSE37157 |
| Aguiar, Jennifer A et al. (2019) Transcriptomic and barrier responses of human airway epithelial cells exposed to cannabis smoke.; Physiol Rep, 7: e14249 |
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GSE125259 |
| Aguila, Julio et al. (2021) Spatial RNA Sequencing Identifies Robust Markers of Vulnerable and Resistant Human Midbrain Dopamine Neurons and Their Expression in Parkinson's Disease.; Front Mol Neurosci, 14: 699562 |
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GSE114918 |
| Aguila, Monica et al. (2025) Evaluation of in vitro liver models and non-human primates for predicting ADAR RNA editing efficiency in human liver.; Sci Rep, 15: 41494 |
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GSE304242 |
| Aguilar-Arnal, Lorena et al. (2013) Cycles in spatial and temporal chromosomal organization driven by the circadian clock.; Nat Struct Mol Biol, 20: 1206-13 |
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GSE49638 |
| Aguilera, Concepción M et al. (2015) Genome-wide expression in visceral adipose tissue from obese prepubertal children.; Int J Mol Sci, 16: 7723-37 |
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GSE9624 |
| Aguilera-Montilla, Noemí et al. (2013) Aryl hydrocarbon receptor contributes to the MEK/ERK-dependent maintenance of the immature state of human dendritic cells.; Blood, 121: e108-17 |
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GSE39745 |
| Agustinus, Albert S et al. (2023) Epigenetic dysregulation from chromosomal transit in micronuclei.; Nature, [no vol.]: [no pages] |
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GSE188644 |
| Agís-Balboa, Roberto Carlos et al. (2017) Formin 2 links neuropsychiatric phenotypes at young age to an increased risk for dementia.; EMBO J, 36: 2815-2828 |
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GSE100070 |
| Ahad, Abdul et al. (2019) NCoR1: Putting the Brakes on the Dendritic Cell Immune Tolerance.; iScience, 19: 996-1011 |
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GSE110422 |
| Ahangari, Farida et al. (2022) Saracatinib, a Selective Src Kinase Inhibitor, Blocks Fibrotic Responses in Preclinical Models of Pulmonary Fibrosis.; Am J Respir Crit Care Med, 206: 1463-1479 |
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GSE178518 |
| Ahanger, Sajad Hamid et al. (2024) Spatial 3D genome organization controls the activity of bivalent chromatin during human neurogenesis.; bioRxiv, [no vol.]: [no pages] |
|
GSE274039.1 |
| Ahlfors, Helena et al. (2010) SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation.; Blood, 116: 1443-53 |
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GSE17241.3 GSE17241.2 GSE17241.1 |
| Ahlfors, Helena et al. (2019) Gene expression dysregulation domains are not a specific feature of Down syndrome.; Nat Commun, 10: 2489 |
|
GSE109294 |
| Ahmad, Ijaz et al. (2024) Exploring the Role of Platelets in Virus-Induced Inflammatory Demyelinating Disease and Myocarditis.; Int J Mol Sci, 25: [no pages] |
|
GSE253385 |
| Ahmad, R et al. (2014) Targeted colonic claudin-2 expression renders resistance to epithelial injury, induces immune suppression, and protects from colitis.; Mucosal Immunol, 7: 1340-53 |
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GSE46006 |
| Ahmadi, Moloud et al. (2021) The Mediator tail module cooperates with proneural factors to determine fate identity in Glioblastoma; bioRxiv, [no vol.]: [no pages] |
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GSE166979 |
| Ahmari, Niousha et al. (2016) Loss of bone marrow adrenergic beta 1 and 2 receptors modifies transcriptional networks, reduces circulating inflammatory factors, and regulates blood pressure.; Physiol Genomics, 48: 526-36 |
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GSE71631 |
| Ahmed, Ahmed Ashour et al. (2007) The extracellular matrix protein TGFBI induces microtubule stabilization and sensitizes ovarian cancers to paclitaxel.; Cancer Cell, 12: 514-27 |
|
GSE9455 |
| Ahmed, Mohammed H et al. (2023) Low-Intensity Pulsed Ultrasound-Mediated Blood-Brain Barrier Opening Increases Anti-Programmed Death-Ligand 1 Delivery and Efficacy in Gl261 Mouse Model.; Pharmaceutics, 15: [no pages] |
|
GSE220909 |
| Ahmed, Mohi et al. (2021) The chromatin remodelling factor Chd7 protects auditory neurons and sensory hair cells from stress-induced degeneration.; Commun Biol, 4: 1260 |
|
GSE163798 |
| Ahmed, Noha et al. (2026) Overexpression of Neuropeptide Y Leads to Progressive, Cutaneous Inflammatory Fibrotic Responses in Mouse Skin.; J Invest Dermatol, 146: 558-561.e5 |
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GSE299729 |
| Ahmed, Oumaima et al. (2025) O-GlcNAcylation of FOXK1 co-opts BAP1 to orchestrate the E2F pathway and promotes oncogenesis.; Nat Commun, 16: 5959 |
|
GSE260904 |
| Ahmed, Raies et al. (2021) Transgenic mice with an R342X mutation in Phf6 display clinical features of Börjeson-Forssman-Lehmann Syndrome.; Hum Mol Genet, 30: 575-594 |
|
GSE156404 |
| Ahmed, Serge H et al. (2005) Gene expression evidence for remodeling of lateral hypothalamic circuitry in cocaine addiction.; Proc Natl Acad Sci U S A, 102: 11533-8 |
|
GSE3016 |
| Ahmed, Umair et al. (2022) Ultrasound Neuromodulation of the Spleen Has Time-Dependent Anti-Inflammatory Effect in a Pneumonia Model.; Front Immunol, 13: 892086 |
|
GSE197466 |
| Ahn, Jihae et al. (2025) 4-1BB stimulation with concomitant inactivation of adenosine A2B receptors enhances CD8+ T cell antitumor response.; J Clin Invest, 135: [no pages] |
|
GSE222286 |
| Ahn, Soyoun et al. (2021) A role of anterior cingulate cortex in the emergence of worker-parasite relationship.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE153649 |
| Ahn, Sun Hee et al. (2013) Gene expression-based classifiers identify Staphylococcus aureus infection in mice and humans.; PLoS One, 8: e48979 |
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GSE33341.1 GSE33341.2 |
| Ahn, Sun-Hee et al. (2010) Two genes on A/J chromosome 18 are associated with susceptibility to Staphylococcus aureus infection by combined microarray and QTL analyses.; PLoS Pathog, 6: e1001088 |
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GSE19668 |
| Ahrends, Tomasz et al. (2021) Enteric pathogens induce tissue tolerance and prevent neuronal loss from subsequent infections.; Cell, 184: 5715-5727.e12 |
|
GSE182294 |
| Ahrens, Richard et al. (2008) Intestinal macrophage/epithelial cell-derived CCL11/eotaxin-1 mediates eosinophil recruitment and function in pediatric ulcerative colitis.; J Immunol, 181: 7390-9 |
|
GSE10191 |
| Ahrens, Sandra et al. (2018) A Central Extended Amygdala Circuit That Modulates Anxiety.; J Neurosci, 38: 5567-5583 |
|
GSE113979 |
| Ahuja, K et al. (2024) A deep phenotyping study in mouse and iPSC models to understand the role of oligodendroglia in optic neuropathy in Wolfram syndrome.; Acta Neuropathol Commun, 12: 140 |
|
GSE264222 |
| Ahuja, Manuj et al. (2021) Bach1 derepression is neuroprotective in a mouse model of Parkinson's disease.; Proc Natl Acad Sci U S A, 118: [no pages] |
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GSE164412 |
| Ai, Ruixue et al. (2025) NAD+reverses Alzheimer's neurological deficits via regulating differential alternative RNA splicing ofEVA1C.; Sci Adv, 11: eady9811 |
|
GSE279334 |
| Ai, Shenjian et al. (2024) CCR2 restricts IFN-γ production by hippocampal CD8 TRM cells that impair learning and memory during recovery from WNV encephalitis.; J Neuroinflammation, 21: 330 |
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GSE277155 GSE277152 GSE277049 |
| Aiba, Kazuhiro et al. (2006) Defining a developmental path to neural fate by global expression profiling of mouse embryonic stem cells and adult neural stem/progenitor cells.; Stem Cells, 24: 889-95 |
|
GSE4075 |
| Aiba, Kazuhiro et al. (2009) Defining developmental potency and cell lineage trajectories by expression profiling of differentiating mouse embryonic stem cells.; DNA Res, 16: 73-80 |
|
GSE11523 |