List of all 20,298 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Aki, Daisuke et al. (2024) The Nr4a family regulates intrahepatic Treg proliferation and liver fibrosis in MASLD models.; J Clin Invest, 134: [no pages] |
|
GSE241657 |
| Akiho, Hirotada et al. (2014) Involvement of interleukin-17A-induced hypercontractility of intestinal smooth muscle cells in persistent gut motor dysfunction.; PLoS One, 9: e92960 |
|
GSE39573 |
| Akimoto, Masayuki et al. (2006) Targeting of GFP to newborn rods by Nrl promoter and temporal expression profiling of flow-sorted photoreceptors.; Proc Natl Acad Sci U S A, 103: 3890-5 |
|
GSE4051 |
| Akin, Debra et al. (2016) RNA-seq analysis of impact of PNN on gene expression and alternative splicing in corneal epithelial cells.; Mol Vis, 22: 40-60 |
|
GSE73060 |
| Akinci, Ersin et al. (2020) Elucidation of remdesivir cytotoxicity pathways through genome-wide CRISPR-Cas9 screening and transcriptomics.; bioRxiv, [no vol.]: [no pages] |
|
GSE154936 |
| Akins, Erin A et al. (2023) An engineered glioblastoma model yields novel macrophage-secreted drivers of invasion.; bioRxiv, [no vol.]: [no pages] |
|
GSE251777 |
| Akins, Kaelin A et al. (2024) Runx1is sufficient but not required for cardiomyocyte cell-cycle activation.; Am J Physiol Heart Circ Physiol, 327: H377-H389 |
|
GSE266578 |
| Akintayo, Ayodele et al. (2020) The Golgi Glycoprotein MGAT4D is an Intrinsic Protector of Testicular Germ Cells From Mild Heat Stress.; Sci Rep, 10: 2135 |
|
GSE137307 |
| Akinyele, Oluwaseun et al. (2023) Impaired polyamine metabolism causes behavioral and neuroanatomical defects in a novel mouse model of Snyder-Robinson Syndrome.; bioRxiv, [no vol.]: [no pages] |
|
GSE226413 |
| Akitsu, Aoi et al. (2024) Parsing digital or analog TCR performance through piconewton forces.; Sci Adv, 10: eado4313 |
|
GSE240414 |
| Akiyama, Kiyotaka et al. (2008) Gene expression profiling of neuropeptides in mouse cerebellum, hippocampus, and retina.; Nutrition, 24: 918-23 |
|
GSE26751 |
| Akizu, Naiara et al. (2013) AMPD2 regulates GTP synthesis and is mutated in a potentially treatable neurodegenerative brainstem disorder.; Cell, 154: 505-17 |
|
GSE46615 |
| Akol, Ipek et al. (2023) Multimodal epigenetic changes and altered NEUROD1 chromatin binding in the mouse hippocampus underlie FOXG1 syndrome.; Proc Natl Acad Sci U S A, 120: e2122467120 |
|
GSE189118 GSE189117 |
| Akrioti, Elissavet et al. (2022) Early Signs of Molecular Defects in iPSC-Derived Neural Stems Cells from Patients with Familial Parkinson's Disease.; Biomolecules, 12: [no pages] |
|
GSE84684 |
| Aksenova, Marina et al. (2019) Inhibition of the Dead Box RNA Helicase 3 Prevents HIV-1 Tat and Cocaine-Induced Neurotoxicity by Targeting Microglia Activation.; J Neuroimmune Pharmacol, [no vol.]: [no pages] |
|
GSE137988 |
| Aksoy, Irene et al. (2016) A Role for RE-1-Silencing Transcription Factor in Embryonic Stem Cells Cardiac Lineage Specification.; Stem Cells, 34: 860-72 |
|
GSE76580 |
| Aksoy, Irene et al. (2017) Personalized genome sequencing coupled with iPSC technology identifies GTDC1 as a gene involved in neurodevelopmental disorders.; Hum Mol Genet, 26: 367-382 |
|
GSE87568.1 GSE87568.2 |
| Aksoy, Ozlem et al. (2012) The atypical E2F family member E2F7 couples the p53 and RB pathways during cellular senescence.; Genes Dev, 26: 1546-57 |
|
GSE40349 |
| Aksoylu, Inci S et al. (2023) Translatome analysis of tuberous sclerosis complex 1 patient-derived neural progenitor cells reveals rapamycin-dependent and independent alterations.; Mol Autism, 14: 39 |
|
GSE236761 GSE239412 |
| Aktar, Sharmin et al. (2024) Transcriptomic evidence of black soybean ethanolic extract and 2-aminobutyric acid in suppressing neuroinflammation and enhancing synaptic transmission.; Biomed Pharmacother, 181: 117633 |
|
GSE270419 |
| Akula, N et al. (2014) RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE53239 |
| Akıncılar, Semih Can et al. (2021) NAIL: an evolutionarily conserved lncRNA essential for licensing coordinated activation of p38 and NFκB in colitis.; Gut, 70: 1857-1871 |
|
GSE138237 |
| Al Khazal, Fatimah J et al. (2024) Similar deficiencies, different outcomes: succinate dehydrogenase loss in adrenal medulla vs. fibroblast cell culture models of paraganglioma.; Cancer Metab, 12: 39 |
|
GSE263778 |
| Al Saleh, Sanaa et al. (2011) Estrogen receptor silencing induces epithelial to mesenchymal transition in human breast cancer cells.; PLoS One, 6: e20610 |
|
GSE27473 |
| Al-Absi, Abdel-Rahman et al. (2020) Df(h15q13)/+ Mouse Model Reveals Loss of Astrocytes and Synaptic-Related Changes of the Excitatory and Inhibitory Circuits in the Medial Prefrontal Cortex.; Cereb Cortex, [no vol.]: [no pages] |
|
GSE147233 |
| Al-Aubodah, Tho-Alfakar et al. (2023) The extrafollicular B cell response is a hallmark of childhood idiopathic nephrotic syndrome.; Nat Commun, 14: 7682 |
|
GSE233275 GSE233276 |
| Al-Azzam, Norah et al. (2024) Inhibition of RNA splicing triggers CHMP7 nuclear entry, impacting TDP-43 function and leading to the onset of ALS cellular phenotypes.; Neuron, 112: 4033-4047.e8 |
|
GSE254208 |
| Al-Baghdadi, Rana J T et al. (2017) Role of activating transcription factor 4 in the hepatic response to amino acid depletion by asparaginase.; Sci Rep, 7: 1272 |
|
GSE92364 |
| Al-Dalahmah, Osama et al. (2023) Re-convolving the compositional landscape of primary and recurrent glioblastoma reveals prognostic and targetable tissue states.; Nat Commun, 14: 2586 |
|
GSE228497 |
| Al-Diab, Ola et al. (2024) Sex-specific molecular signature of mouse podocytes in homeostasis and in response to pharmacological challenge with rapamycin.; Biol Sex Differ, 15: 72 |
|
GSE276967 |
| Al-Kachak, Amni et al. (2023) Histone H3 serotonylation dynamics in dorsal raphe nucleus contribute to stress- and antidepressant-mediated gene expression and behavior.; bioRxiv, [no vol.]: [no pages] |
|
GSE216102 |
| Al-Raawi, Diaa et al. (2019) A novel form of JARID2 is required for differentiation in lineage-committed cells.; EMBO J, 38: [no pages] |
|
GSE102116 |
| Al-Sayegh, Mohamed et al. (2021) Mouse Embryonic Fibroblast Adipogenic Potential: A Comprehensive Transcriptome Analysis.; Adipocyte, 10: 1-20 |
|
GSE152750 |
| Alaiz-Noya, Marta et al. (2025) Neuronal type-specific modulation of cognition and AP-1 signaling by early-life rearing conditions.; Nat Commun, 16: 9710 |
|
GSE288334 |
| Alajbegovic, Azra et al. (2022) Transcription factor GATA6 promotes migration of human coronary artery smooth muscle cellsin vitro.; Front Physiol, 13: 1054819 |
|
GSE216686 |
| Alam El Din, Dowlette-Mary et al. (2025) Human neural organoid microphysiological systems show the building blocks necessary for basic learning and memory.; Commun Biol, 8: 1237 |
|
GSE301725 |
| Alam, Imranul et al. (2010) Identification of genes influencing skeletal phenotypes in congenic P/NP rats.; J Bone Miner Res, 25: 1314-25 |
|
GSE12066 |
| Alam, Md Suhail et al. (2012) Genomic expression analyses reveal lysosomal, innate immunity proteins, as disease correlates in murine models of a lysosomal storage disorder.; PLoS One, 7: e48273 |
|
GSE39621 |
| Alam, Sabrina Shameen et al. (2022) Snrpb is required in murine neural crest cells for proper splicing and craniofacial morphogenesis.; Dis Model Mech, 15: [no pages] |
|
GSE180546 |
| Alamri, Ahmad M et al. (2016) Primary cancer cell culture: mammary-optimized vs conditional reprogramming.; Endocr Relat Cancer, 23: 535-54 |
|
GSE81212 |
| Alao, Hawwa et al. (2018) Baseline Intrahepatic and Peripheral Innate Immunity are Associated with Hepatitis C Virus Clearance During Direct-Acting Antiviral Therapy.; Hepatology, 68: 2078-2088 |
|
GSE109278 |
| Alatawneh, Rawan et al. (2023) Deciphering transcription factors and their corresponding regulatory elements during inhibitory interneuron differentiation using deep neural networks.; Front Cell Dev Biol, 11: 1034604 |
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GSE218668 |
| Alaynick, William A et al. (2010) ERRgamma regulates cardiac, gastric, and renal potassium homeostasis.; Mol Endocrinol, 24: 299-309 |
|
GSE18896 |
| Alba, George A et al. (2021) NEDD9 Is a Novel and Modifiable Mediator of Platelet-Endothelial Adhesion in the Pulmonary Circulation.; Am J Respir Crit Care Med, 203: 1533-1545 |
|
GSE163827 |
| Alberry, Bonnie L J et al. (2020) Hippocampal DNA Methylation in a Mouse Model of Fetal Alcohol Spectrum Disorder That Includes Maternal Separation Stress Only Partially Explains Changes in Gene Expression.; Front Genet, 11: 70 |
|
GSE133369 |
| Albert, Mareike et al. (2013) The histone demethylase Jarid1b ensures faithful mouse development by protecting developmental genes from aberrant H3K4me3.; PLoS Genet, 9: e1003461 |
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GSE41171 |
| Albert, Mareike et al. (2017) Epigenome profiling and editing of neocortical progenitor cells during development.; EMBO J, 36: 2642-2658 |
|
GSE90695 |
| Albert, Thomas K et al. (2021) An extracellular vesicle-related gene expression signature identifies high-risk patients in medulloblastoma.; Neuro Oncol, 23: 586-598 |
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GSE159763.1 GSE159763.2 |
| Albino, Domenico et al. (2008) Identification of low intratumoral gene expression heterogeneity in neuroblastic tumors by genome-wide expression analysis and game theory.; Cancer, 113: 1412-22 |
|
GSE7529 |
| Albino, Domenico et al. (2011) Gene expression profiling identifies eleven DNA repair genes down-regulated during mouse neural crest cell migration.; Int J Dev Biol, 55: 65-72 |
|
GSE11356 |
| Albitar, Lina et al. (2010) EGFR isoforms and gene regulation in human endometrial cancer cells.; Mol Cancer, 9: 166 |
|
GSE20854 |
| Albright, Andrew V et al. (2004) Microarray analysis of activated mixed glial (microglia) and monocyte-derived macrophage gene expression.; J Neuroimmunol, 157: 27-38 |
|
GSE1910 |
| Alcaino, Constanza et al. (2025) Mechanisms of Activation and Serotonin Release From Human Enterochromaffin Cells.; Cell Mol Gastroenterol Hepatol, 19: 101610 |
|
GSE292419 |
| Alcalay, Myriam et al. (2005) Acute myeloid leukemia bearing cytoplasmic nucleophosmin (NPMc+ AML) shows a distinct gene expression profile characterized by up-regulation of genes involved in stem-cell maintenance.; Blood, 106: 899-902 |
|
GSE34860 |
| Alcalá-Vida, Rafael et al. (2021) Neuron type-specific increase in lamin B1 contributes to nuclear dysfunction in Huntington's disease.; EMBO Mol Med, 13: e12105 |
|
GSE139884 |
| Alcalá-Vida, Rafael et al. (2022) Altered activity-regulated H3K9 acetylation at TGF-beta signaling genes during egocentric memory in Huntington's disease.; Prog Neurobiol, 219: 102363 |
|
GSE157099 |
| Alcendor, Ralph R et al. (2007) Sirt1 regulates aging and resistance to oxidative stress in the heart.; Circ Res, 100: 1512-21 |
|
GSE7407 |
| Alcott, Callison E et al. (2020) Partial loss of CFIm25 causes learning deficits and aberrant neuronal alternative polyadenylation.; Elife, 9: [no pages] |
|
GSE135384 GSE142682 |
| Aldali, Fatima et al. (2025) Induced Pluripotent Stem Cell-Derived Exosomes Promote Peripheral Nerve Regeneration in a Rat Sciatic Nerve Crush Injury Model: A Safety and Efficacy Study.; Cells, 14: [no pages] |
|
GSE286150 |
| Aldaz, Beatriz et al. (2013) Involvement of miRNAs in the differentiation of human glioblastoma multiforme stem-like cells.; PLoS One, 8: e77098 |
|
GSE44841 |
| Aldehoff, Alix Sarah et al. (2024) Unveiling the dynamics of acetylation and phosphorylation in SGBS and 3T3-L1 adipogenesis.; iScience, 27: 109711 |
|
GSE245619 |
| Aldinger, Kimberly A et al. (2020) Transcriptome data of temporal and cingulate cortex in the Rett syndrome brain.; Sci Data, 7: 192 |
|
GSE128380 |
| Aldiri, Issam et al. (2015) Brg1 coordinates multiple processes during retinogenesis and is a tumor suppressor in retinoblastoma.; Development, 142: 4092-106 |
|
GSE74181 |
| Aldiri, Issam et al. (2017) The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.; Neuron, 94: 550-568.e10 |
|
GSE87042 |
| Aldous, Sarah G et al. (2024) A CAG repeat threshold for therapeutics targeting somatic instability in Huntington's disease.; Brain, 147: 1784-1798 |
|
GSE245510 |
| Aldridge, Daniel L et al. (2024) Endogenous IL-27 during toxoplasmosis limits early monocyte responses and their inflammatory activation by pathological T cells.; mBio, 15: e0008324 |
|
GSE184350 |
| Alefeld, Emily et al. (2024) In vitro model of retinoblastoma derived tumor and stromal cells for tumor microenvironment (TME) studies.; Cell Death Dis, 15: 905 |
|
GSE274663 |
| Alejo-Valle, Oriol et al. (2022) The megakaryocytic transcription factor ARID3A suppresses leukemia pathogenesis.; Blood, 139: 651-665 |
|
GSE169738 |
| Alekseenko, Zhanna et al. (2022) Robust derivation of transplantable dopamine neurons from human pluripotent stem cells by timed retinoic acid delivery.; Nat Commun, 13: 3046 |
|
GSE147404 |
| Alekseyenko, Artyom A et al. (2015) The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains.; Genes Dev, 29: 1507-23 |
|
GSE70871 |
| Alekseyenko, Artyom A et al. (2017) Ectopic protein interactions within BRD4-chromatin complexes drive oncogenic megadomain formation in NUT midline carcinoma.; Proc Natl Acad Sci U S A, 114: E4184-E4192 |
|
GSE96775 |
| Alenda, Cristina et al. (2021) FFPE samples from cavitational ultrasonic surgical aspirates are suitable for RNA profiling of gliomas.; PLoS One, 16: e0255168 |
|
GSE166696 |
| Alenghat, Theresa et al. (2013) Histone deacetylase 3 coordinates commensal-bacteria-dependent intestinal homeostasis.; Nature, [no vol.]: [no pages] |
|
GSE50190 |
| Alessandrini, Federica et al. (2018) ETV7-Mediated DNAJC15 Repression Leads to Doxorubicin Resistance in Breast Cancer Cells.; Neoplasia, 20: 857-870 |
|
GSE24065 |
| Alessandrini, Francesca et al. (2022) Lung Epithelial CYP1 Activity Regulates Aryl Hydrocarbon Receptor Dependent Allergic Airway Inflammation.; Front Immunol, 13: 901194 |
|
GSE158715 |
| Alessio, Helaine M et al. (2014) Comparison of gene and protein expressions in rats residing in standard cages with those having access to an exercise wheel.; Biomed Res Int, 2014: 950516 |
|
GSE51380 |
| Alewel, Devin I et al. (2023) Differential transcriptomic alterations in nasal versus lung tissue of acrolein-exposed rats.; Front Toxicol, 5: 1280230 |
|
GSE247698 |
| Alexander, Desi C et al. (2022) Targeting acetyl-CoA metabolism attenuates the formation of fear memories through reduced activity-dependent histone acetylation.; Proc Natl Acad Sci U S A, 119: e2114758119 |
|
GSE199887 |
| Alexander, Jonathan Michael et al. (2020) Excessive ?-Catenin in Excitatory Neurons Results in Reduced Social and Increased Repetitive Behaviors and Altered Expression of Multiple Genes Linked to Human Autism.; Front Synaptic Neurosci, 12: 14 |
|
GSE147034 |
| Alfano, Giovanna et al. (2011) Vax2 regulates retinoic acid distribution and cone opsin expression in the vertebrate eye.; Development, 138: 261-71 |
|
GSE19626 |
| Alfaro, Ana Jimena et al. (2023) Fasting-sensitive SUMO-switch on Prox1 controls hepatic cholesterol metabolism.; EMBO Rep, 24: e55981 |
|
GSE237593 |
| Alghanem, Ahmad F et al. (2021) The SWELL1-LRRC8 complex regulates endothelial AKT-eNOS signaling and vascular function.; Elife, 10: [no pages] |
|
GSE166989 |
| Algranati, Danielle et al. (2024) Dual targeting of histone deacetylases and MYC as potential treatment strategy for H3-K27M pediatric gliomas.; Elife, 13: [no pages] |
|
GSE221612 |
| Alhamdoosh, Monther et al. (2017) Combining multiple tools outperforms individual methods in gene set enrichment analyses.; Bioinformatics, 33: 414-424 |
|
GSE79027 |
| Alhassen, Sammy et al. (2021) Intergenerational trauma transmission is associated with brain metabotranscriptome remodeling and mitochondrial dysfunction.; Commun Biol, 4: 783 |
|
GSE171275 |
| Alhopuro, Pia et al. (2012) Candidate driver genes in microsatellite-unstable colorectal cancer.; Int J Cancer, [no vol.]: [no pages] |
|
GSE24514 |
| Ali, Amr et al. (2023) The SGLT2 inhibitor canagliflozin suppresses growth and enhances prostate cancer response to radiotherapy.; Commun Biol, 6: 919 |
|
GSE239688 |
| Ali, Dalia et al. (2022) High-fat diet-induced obesity augments the deleterious effects of estrogen deficiency on bone: Evidence from ovariectomized mice.; Aging Cell, 21: e13726 |
|
GSE194075 |
| Ali, Fahad R et al. (2020) Dephosphorylation of the Proneural Transcription Factor ASCL1 Re-Engages a Latent Post-Mitotic Differentiation Program in Neuroblastoma.; Mol Cancer Res, 18: 1759-1766 |
|
GSE153823 |
| Ali, Zeinab et al. (2023) Mutation in the FUS nuclear localisation signal domain causes neurodevelopmental and systemic metabolic alterations.; Dis Model Mech, 16: [no pages] |
|
GSE245520 |
| Alibegovic, A C et al. (2010) Insulin resistance induced by physical inactivity is associated with multiple transcriptional changes in skeletal muscle in young men.; Am J Physiol Endocrinol Metab, 299: E752-63 |
|
GSE24215 |
| Alibhai, James et al. (2016) Distribution of Misfolded Prion Protein Seeding Activity Alone Does Not Predict Regions of Neurodegeneration.; PLoS Biol, 14: e1002579 |
|
GSE74079 |
| Alieva, Anelya Kh et al. (2014) Involvement of endocytosis and alternative splicing in the formation of the pathological process in the early stages of Parkinson's disease.; Biomed Res Int, 2014: 718732 |
|
GSE54536 |
| Alim, Ishraq et al. (2019) Selenium Drives a Transcriptional Adaptive Program to Block Ferroptosis and Treat Stroke.; Cell, 177: 1262-1279.e25 |
|
GSE126787 |