List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Alekseyenko, Artyom A et al. (2015) The oncogenic BRD4-NUT chromatin regulator drives aberrant transcription within large topological domains.; Genes Dev, 29: 1507-23 |
|
GSE70871 |
| Alekseyenko, Artyom A et al. (2017) Ectopic protein interactions within BRD4-chromatin complexes drive oncogenic megadomain formation in NUT midline carcinoma.; Proc Natl Acad Sci U S A, 114: E4184-E4192 |
|
GSE96775 |
| Alenda, Cristina et al. (2021) FFPE samples from cavitational ultrasonic surgical aspirates are suitable for RNA profiling of gliomas.; PLoS One, 16: e0255168 |
|
GSE166696 |
| Alenghat, Theresa et al. (2013) Histone deacetylase 3 coordinates commensal-bacteria-dependent intestinal homeostasis.; Nature, [no vol.]: [no pages] |
|
GSE50190 |
| Alesi, Nicola et al. (2024) TFEB drives mTORC1 hyperactivation and kidney disease in Tuberous Sclerosis Complex.; Nat Commun, 15: 406 |
|
GSE244072 |
| Alessandrini, Federica et al. (2018) ETV7-Mediated DNAJC15 Repression Leads to Doxorubicin Resistance in Breast Cancer Cells.; Neoplasia, 20: 857-870 |
|
GSE24065 |
| Alessandrini, Francesca et al. (2022) Lung Epithelial CYP1 Activity Regulates Aryl Hydrocarbon Receptor Dependent Allergic Airway Inflammation.; Front Immunol, 13: 901194 |
|
GSE158715 |
| Alessio, Helaine M et al. (2014) Comparison of gene and protein expressions in rats residing in standard cages with those having access to an exercise wheel.; Biomed Res Int, 2014: 950516 |
|
GSE51380 |
| Alewel, Devin I et al. (2023) Differential transcriptomic alterations in nasal versus lung tissue of acrolein-exposed rats.; Front Toxicol, 5: 1280230 |
|
GSE247698 |
| Alexander, Desi C et al. (2022) Targeting acetyl-CoA metabolism attenuates the formation of fear memories through reduced activity-dependent histone acetylation.; Proc Natl Acad Sci U S A, 119: e2114758119 |
|
GSE199887 |
| Alexander, Jonathan Michael et al. (2020) Excessive ?-Catenin in Excitatory Neurons Results in Reduced Social and Increased Repetitive Behaviors and Altered Expression of Multiple Genes Linked to Human Autism.; Front Synaptic Neurosci, 12: 14 |
|
GSE147034 |
| Alfano, Giovanna et al. (2011) Vax2 regulates retinoic acid distribution and cone opsin expression in the vertebrate eye.; Development, 138: 261-71 |
|
GSE19626 |
| Alfaro, Ana Jimena et al. (2023) Fasting-sensitive SUMO-switch on Prox1 controls hepatic cholesterol metabolism.; EMBO Rep, 24: e55981 |
|
GSE237593 |
| Alghanem, Ahmad F et al. (2021) The SWELL1-LRRC8 complex regulates endothelial AKT-eNOS signaling and vascular function.; Elife, 10: [no pages] |
|
GSE166989 |
| Algranati, Danielle et al. (2024) Dual targeting of histone deacetylases and MYC as potential treatment strategy for H3-K27M pediatric gliomas.; Elife, 13: [no pages] |
|
GSE221612 |
| Alhamdoosh, Monther et al. (2017) Combining multiple tools outperforms individual methods in gene set enrichment analyses.; Bioinformatics, 33: 414-424 |
|
GSE79027 |
| Alhassen, Sammy et al. (2021) Intergenerational trauma transmission is associated with brain metabotranscriptome remodeling and mitochondrial dysfunction.; Commun Biol, 4: 783 |
|
GSE171275 |
| Alhopuro, Pia et al. (2012) Candidate driver genes in microsatellite-unstable colorectal cancer.; Int J Cancer, [no vol.]: [no pages] |
|
GSE24514 |
| Ali, Amr et al. (2023) The SGLT2 inhibitor canagliflozin suppresses growth and enhances prostate cancer response to radiotherapy.; Commun Biol, 6: 919 |
|
GSE239688 |
| Ali, Dalia et al. (2022) High-fat diet-induced obesity augments the deleterious effects of estrogen deficiency on bone: Evidence from ovariectomized mice.; Aging Cell, 21: e13726 |
|
GSE194075 |
| Ali, Fahad R et al. (2020) Dephosphorylation of the Proneural Transcription Factor ASCL1 Re-Engages a Latent Post-Mitotic Differentiation Program in Neuroblastoma.; Mol Cancer Res, 18: 1759-1766 |
|
GSE153823 |
| Ali, Zeinab et al. (2023) Mutation in the FUS nuclear localisation signal domain causes neurodevelopmental and systemic metabolic alterations.; Dis Model Mech, 16: [no pages] |
|
GSE245520 |
| Alibegovic, A C et al. (2010) Insulin resistance induced by physical inactivity is associated with multiple transcriptional changes in skeletal muscle in young men.; Am J Physiol Endocrinol Metab, 299: E752-63 |
|
GSE24215 |
| Alibhai, James et al. (2016) Distribution of Misfolded Prion Protein Seeding Activity Alone Does Not Predict Regions of Neurodegeneration.; PLoS Biol, 14: e1002579 |
|
GSE74079 |
| Alieva, Anelya Kh et al. (2014) Involvement of endocytosis and alternative splicing in the formation of the pathological process in the early stages of Parkinson's disease.; Biomed Res Int, 2014: 718732 |
|
GSE54536 |
| Alim, Ishraq et al. (2019) Selenium Drives a Transcriptional Adaptive Program to Block Ferroptosis and Treat Stroke.; Cell, 177: 1262-1279.e25 |
|
GSE126787 |
| Alimonti, Andrea et al. (2010) Subtle variations in Pten dose determine cancer susceptibility.; Nat Genet, 42: 454-8 |
|
GSE3744 |
| Aliprantis, Antonios O et al. (2008) NFATc1 in mice represses osteoprotegerin during osteoclastogenesis and dissociates systemic osteopenia from inflammation in cherubism.; J Clin Invest, 118: 3775-89 |
|
GSE37219 |
| Alizadeh, A A et al. (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.; Nature, 403: 503-11 |
|
GSE60 |
| Alizadeh, Darya et al. (2018) Immunostimulatory CpG on Carbon Nanotubes Selectively Inhibits Migration of Brain Tumor Cells.; Bioconjug Chem, 29: 1659-1668 |
|
GSE102294 |
| Aljouda, Nour A et al. (2024) Transcription factor 4 is a key mediator of oncogenesis in neuroblastoma by promoting MYC activity.; Mol Oncol, [no vol.]: [no pages] |
|
GSE222212 |
| Allahham, Amira et al. (2026) Non-severe burn injury leads to sustained molecular changes in the brain in a murine model.; Sci Rep, 16: [no pages] |
|
GSE304956 |
| Allain, Eric P et al. (2020) UGT2B17 modifies drug response in chronic lymphocytic leukaemia.; Br J Cancer, 123: 240-251 |
|
GSE135030 |
| Allan, Elizabeth H et al. (2008) EphrinB2 regulation by PTH and PTHrP revealed by molecular profiling in differentiating osteoblasts.; J Bone Miner Res, 23: 1170-81 |
|
GSE45895 |
| Allander, S V et al. (2001) Gastrointestinal stromal tumors with KIT mutations exhibit a remarkably homogeneous gene expression profile.; Cancer Res, 61: 8624-8 |
|
allander-gist |
| Allantaz, Florence et al. (2007) Blood leukocyte microarrays to diagnose systemic onset juvenile idiopathic arthritis and follow the response to IL-1 blockade.; J Exp Med, 204: 2131-44 |
|
GSE8650 |
| Allantaz-Frager, Florence et al. (2013) Identification of biomarkers of response to IFNg during endotoxin tolerance: application to septic shock.; PLoS One, 8: e68218 |
|
GSE46914 |
| Alldred, Melissa J et al. (2022) Correction to: Profiling Basal Forebrain Cholinergic Neurons Reveals a Molecular Basis for Vulnerability Within the Ts65Dn Model of Down Syndrome and Alzheimer's Disease.; Mol Neurobiol, 59: 1345-1346 |
|
GSE246245 |
| Alldred, Melissa J et al. (2024) Analysis of microisolated frontal cortex excitatory layer III and V pyramidal neurons reveals a neurodegenerative phenotype in individuals with Down syndrome.; Acta Neuropathol, 148: 16 |
|
GSE251939 |
| Alldred, Melissa J et al. (2024) Hippocampal CA1 Pyramidal Neurons Display Sublayer and Circuitry Dependent Degenerative Expression Profiles in Aged Female Down Syndrome Mice.; J Alzheimers Dis, 100: S341-S362 |
|
GSE264258 |
| Alldred, Melissa J et al. (2025) Benefits of Maternal Choline Supplementation on Aged Basal Forebrain Cholinergic Neurons (BFCNs) in a Mouse Model of Down Syndrome and Alzheimer's Disease.; Biomolecules, 15: [no pages] |
|
GSE296095 |
| Allegakoen, David V et al. (2026) The essential chaperone DNAJC17 activates HSP70 to coordinate RNA splicing and G2-M progression.; Sci Rep, [no vol.]: [no pages] |
|
GSE235379 |
| Allen, Carl E et al. (2010) Cell-specific gene expression in Langerhans cell histiocytosis lesions reveals a distinct profile compared with epidermal Langerhans cells.; J Immunol, 184: 4557-67 |
|
GSE16395 |
| Allen, David L et al. (2009) Effects of spaceflight on murine skeletal muscle gene expression.; J Appl Physiol (1985), [no vol.]: [no pages] |
|
GSE10533 |
| Allen, Scott P et al. (2020) Transcriptomic Analysis of Human Astrocytes In Vitro Reveals Hypoxia-Induced Mitochondrial Dysfunction, Modulation of Metabolism, and Dysregulation of the Immune Response.; Int J Mol Sci, 21: [no pages] |
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GSE145935 |
| Allende, Maria L et al. (2023) Sialidase NEU3 action on GM1 ganglioside is neuroprotective in GM1 gangliosidosis.; J Lipid Res, 64: 100463 |
|
GSE241844 |
| Allende, Maria L et al. (2025) CNS-targeted base editing of the major late-onset Tay-Sachs mutation alleviates disease in mice.; J Clin Invest, 135: [no pages] |
|
GSE268712 |
| Allende, Mikel et al. (2016) Hsp70 protects from stroke in atrial fibrillation patients by preventing thrombosis without increased bleeding risk.; Cardiovasc Res, 110: 309-18 |
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GSE66724 |
| Alligier, M et al. (2012) Subcutaneous adipose tissue remodeling during the initial phase of weight gain induced by overfeeding in humans.; J Clin Endocrinol Metab, 97: E183-92 |
|
GSE28005 |
| Allison, Reilly L et al. (2022) Microglia Influence Neurofilament Deposition in ALS iPSC-Derived Motor Neurons.; Genes (Basel), 13: [no pages] |
|
GSE192755 |
| Allodi, Ilary et al. (2019) Modeling Motor Neuron Resilience in ALS Using Stem Cells.; Stem Cell Reports, 12: 1329-1341 |
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GSE118620 |
| Allweier, Johannes et al. (2024) Cytoadhesion of Plasmodium falciparum-Infected Red Blood Cells Changes the Expression of Cytokine-, Histone- and Antiviral Protein-Encoding Genes in Brain Endothelial Cells.; Mol Microbiol, 122: 948-967 |
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GSE266399 |
| Almansouri, Taghreed et al. (2024) The Microglial Transcriptome of Age-Associated Deep Subcortical White Matter Lesions Suggests a Neuroprotective Response to Blood-Brain Barrier Dysfunction.; Int J Mol Sci, 25: [no pages] |
|
GSE260815 |
| Almedawar, Seba et al. (2020) MERTK-Dependent Ensheathment of Photoreceptor Outer Segments by Human Pluripotent Stem Cell-Derived Retinal Pigment Epithelium.; Stem Cell Reports, 14: 374-389 |
|
GSE127352 |
| Almeida, Madson Q et al. (2011) Integrated genomic analysis of nodular tissue in macronodular adrenocortical hyperplasia: progression of tumorigenesis in a disorder associated with multiple benign lesions.; J Clin Endocrinol Metab, 96: E728-38 |
|
GSE25031 |
| Almeida, Sandra et al. (2012) Induced pluripotent stem cell models of progranulin-deficient frontotemporal dementia uncover specific reversible neuronal defects.; Cell Rep, 2: 789-98 |
|
GSE40378 |
| Almier, Nedaa et al. (2024) Targeting the Epigenome Reduces Keloid Fibroblast Cell Proliferation, Migration, and Invasion.; J Invest Dermatol, [no vol.]: [no pages] |
|
GSE232079 |
| Almon, Richard R et al. (2005) Temporal profiling of the transcriptional basis for the development of corticosteroid-induced insulin resistance in rat muscle.; J Endocrinol, 184: 219-32 |
|
GSE490 |
| Almon, Richard R et al. (2007) Microarray analysis of the temporal response of skeletal muscle to methylprednisolone: comparative analysis of two dosing regimens.; Physiol Genomics, 30: 282-99 |
|
GSE5101 |
| Almon, Richard R et al. (2008) Circadian variations in rat liver gene expression: relationships to drug actions.; J Pharmacol Exp Ther, 326: 700-16 |
|
GSE8988 |
| Almon, Richard R et al. (2008) Relationships between circadian rhythms and modulation of gene expression by glucocorticoids in skeletal muscle.; Am J Physiol Regul Integr Comp Physiol, 295: R1031-47 |
|
GSE8989 |
| Aloia, Luigi et al. (2014) Zrf1 is required to establish and maintain neural progenitor identity.; Genes Dev, 28: 182-97 |
|
GSE53541 |
| Alonso-Curbelo, Direna et al. (2014) RAB7 controls melanoma progression by exploiting a lineage-specific wiring of the endolysosomal pathway.; Cancer Cell, 26: 61-76 |
|
GSE42735 |
| Alonso-Martin, Sonia et al. (2016) Gene Expression Profiling of Muscle Stem Cells Identifies Novel Regulators of Postnatal Myogenesis.; Front Cell Dev Biol, 4: 58 |
|
GSE63860 |
| Alpsoy, Aktan et al. (2024) IκBζ is a dual-use coactivator of NF-κB and POU transcription factors.; Mol Cell, 84: 1149-1157.e7 |
|
GSE239374 |
| Alqahtani, S et al. (2025) Investigations into the basal neural-like properties of dental pulp stem cells reveal they possess a functional type 2 muscarinic receptor which regulates quiescence.; Stem Cell Res Ther, 16: 632 |
|
GSE297021 |
| Alrefai, Hasan et al. (2025) Xenoline-polarized macrophages as an alternative in vitro model of tumor-associated macrophages in glioblastoma.; Acta Neuropathol Commun, 13: 137 |
|
GSE296472 |
| Als, Anne B et al. (2007) Emmprin and survivin predict response and survival following cisplatin-containing chemotherapy in patients with advanced bladder cancer.; Clin Cancer Res, 13: 4407-14 |
|
GSE5287 |
| Alsharif, Ifat et al. (2021) Cell-penetrating, antioxidant SELENOT mimetic protects dopaminergic neurons and ameliorates motor dysfunction in Parkinson's disease animal models.; Redox Biol, 40: 101839 |
|
GSE151808 |
| Alshoubaki, Yasmin K et al. (2024) Tregs delivered post-myocardial infarction adopt an injury-specific phenotype promoting cardiac repair via macrophages in mice.; Nat Commun, 15: 6480 |
|
GSE268828 |
| Alsina-Sanchis, Elisenda et al. (2022) Endothelial RBPJ Is Essential for the Education of Tumor-Associated Macrophages.; Cancer Res, 82: 4414-4428 |
|
GSE213371 |
| Alsiraj, Yasir et al. (2017) Female Mice With an XY Sex Chromosome Complement Develop Severe Angiotensin II-Induced Abdominal Aortic Aneurysms.; Circulation, 135: 379-391 |
|
GSE81580 |
| Altarche-Xifro, Wassim et al. (2016) Functional Rescue of Dopaminergic Neuron Loss in Parkinson's Disease Mice After Transplantation of Hematopoietic Stem and Progenitor Cells.; EBioMedicine, 8: 83-95 |
|
GSE77527 |
| Altemeier, William A et al. (2005) Modulation of lipopolysaccharide-induced gene transcription and promotion of lung injury by mechanical ventilation.; J Immunol, 175: 3369-76 |
|
GSE2411 |
| Alter, Mark D et al. (2008) Variation in the large-scale organization of gene expression levels in the hippocampus relates to stable epigenetic variability in behavior.; PLoS One, 3: e3344 |
|
GSE11680 GSE11679 |
| Alter, Mark D et al. (2011) Autism and increased paternal age related changes in global levels of gene expression regulation.; PLoS One, 6: e16715 |
|
GSE25507 |
| Althoff, K et al. (2015) A Cre-conditional MYCN-driven neuroblastoma mouse model as an improved tool for preclinical studies.; Oncogene, 34: 3357-68 |
|
GSE57810 |
| Altinbay, Mukaddes et al. (2024) Chem-CRISPR/dCas9FCPF: a platform for chemically induced epigenome editing.; Nucleic Acids Res, 52: 11587-11601 |
|
GSE232132 |
| Altinok, Selin et al. (2025) Domain-specific decoupling of co-chaperone and ligase functions in <i>STUB1</i> underlies biochemical and clinical heterogeneity in SCA48; bioRxiv, [no vol.]: [no pages] |
|
GSE310700 |
| Altintas, Dogus Murat et al. (2013) Differentially expressed androgen-regulated genes in androgen-sensitive tissues reveal potential biomarkers of early prostate cancer.; PLoS One, 8: e66278 |
|
GSE29232 |
| Altmüller, Franziska et al. (2017) Aberrant neuronal activity-induced signaling and gene expression in a mouse model of RASopathy.; PLoS Genet, 13: e1006684 |
|
GSE80061 |
| Altug-Teber, O et al. (2007) Specific transcriptional changes in human fetuses with autosomal trisomies.; Cytogenet Genome Res, 119: 171-84 |
|
GSE6283 |
| Altıntaş, Ali et al. (2020) Transcriptomic and epigenomics atlas of myotubes reveals insight into the circadian control of metabolism and development.; Epigenomics, 12: 701-713 |
|
GSE131844 |
| Alugubelly, Navatha et al. (2019) Adolescent rat social play: Amygdalar proteomic and transcriptomic data.; Data Brief, 27: 104589 |
|
GSE126023 |
| Alvarado, Sebastian et al. (2013) Methylated DNA binding domain protein 2 (MBD2) coordinately silences gene expression through activation of the microRNA hsa-mir-496 promoter in breast cancer cell line.; PLoS One, 8: e74009 |
|
GSE47873 |
| Alvarez, Mariano J et al. (2016) Functional characterization of somatic mutations in cancer using network-based inference of protein activity.; Nat Genet, 48: 838-47 |
|
GSE45838 |
| Alvarez, Mariano J et al. (2018) A precision oncology approach to the pharmacological targeting of mechanistic dependencies in neuroendocrine tumors.; Nat Genet, 50: 979-989 |
|
GSE96760 |
| Alvarez, Mariano Javier et al. (2009) Correlating measurements across samples improves accuracy of large-scale expression profile experiments.; Genome Biol, 10: R143 |
|
GSE17172 |
| Alvarez, Sandy et al. (2023) Netrin1 patterns the dorsal spinal cord through modulation of Bmp signaling.; bioRxiv, [no vol.]: [no pages] |
|
GSE246903 |
| Alvarez-López, María Jesús et al. (2013) Long-term exercise modulates hippocampal gene expression in senescent female mice.; J Alzheimers Dis, 33: 1177-90 |
|
GSE36571 |
| Alvarez-Periel, Elena et al. (2025) Global analysis of excitotoxicity-induced alterations in RNA structure and RNA-protein binding in neurons.; iScience, 28: 112595 |
|
GSE268844 |
| Alvarez-Saavedra, Matías et al. (2016) Voluntary Running Triggers VGF-Mediated Oligodendrogenesis to Prolong the Lifespan of Snf2h-Null Ataxic Mice.; Cell Rep, 17: 862-875 |
|
GSE86235 |
| Alvarez-Vergara, Maria I et al. (2021) Non-productive angiogenesis disassembles Aß plaque-associated blood vessels.; Nat Commun, 12: 3098 |
|
GSE97423 GSE121729 |
| Alves, Chrystian J et al. (2014) Dysregulated expression of death, stress and mitochondrion related genes in the sciatic nerve of presymptomatic SOD1(G93A) mouse model of Amyotrophic Lateral Sclerosis.; Front Cell Neurosci, 9: 332 |
|
GSE69450 |
| Alves, Chrystian J et al. (2015) Gene expression profiling for human iPS-derived motor neurons from sporadic ALS patients reveals a strong association between mitochondrial functions and neurodegeneration.; Front Cell Neurosci, 9: 289 |
|
GSE68240 |
| Alves, Hugo et al. (2012) A mesenchymal stromal cell gene signature for donor age.; PLoS One, 7: e42908 |
|
GSE39540 |
| Aly, Sahar et al. (2009) Mycobacteria-induced granuloma necrosis depends on IRF-1.; J Cell Mol Med, [no vol.]: [no pages] |
|
GSE11809 |
| Alzate-Correa, Diego et al. (2021) Light-induced changes in the suprachiasmatic nucleus transcriptome regulated by the ERK/MAPK pathway.; PLoS One, 16: e0249430 |
|
GSE165799 |