List of all 16,681 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Almon, Richard R et al. (2008) Circadian variations in rat liver gene expression: relationships to drug actions.; J Pharmacol Exp Ther, 326: 700-16 |
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GSE8988 |
| Almon, Richard R et al. (2008) Relationships between circadian rhythms and modulation of gene expression by glucocorticoids in skeletal muscle.; Am J Physiol Regul Integr Comp Physiol, 295: R1031-47 |
|
GSE8989 |
| Aloia, Luigi et al. (2014) Zrf1 is required to establish and maintain neural progenitor identity.; Genes Dev, 28: 182-97 |
|
GSE53541 |
| Alonso-Curbelo, Direna et al. (2014) RAB7 controls melanoma progression by exploiting a lineage-specific wiring of the endolysosomal pathway.; Cancer Cell, 26: 61-76 |
|
GSE42735 |
| Alonso-Martin, Sonia et al. (2016) Gene Expression Profiling of Muscle Stem Cells Identifies Novel Regulators of Postnatal Myogenesis.; Front Cell Dev Biol, 4: 58 |
|
GSE63860 |
| Alpsoy, Aktan et al. (2024) IκBζ is a dual-use coactivator of NF-κB and POU transcription factors.; Mol Cell, 84: 1149-1157.e7 |
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GSE239374 |
| Als, Anne B et al. (2007) Emmprin and survivin predict response and survival following cisplatin-containing chemotherapy in patients with advanced bladder cancer.; Clin Cancer Res, 13: 4407-14 |
|
GSE5287 |
| Alsharif, Ifat et al. (2021) Cell-penetrating, antioxidant SELENOT mimetic protects dopaminergic neurons and ameliorates motor dysfunction in Parkinson's disease animal models.; Redox Biol, 40: 101839 |
|
GSE151808 |
| Alshoubaki, Yasmin K et al. (2024) Tregs delivered post-myocardial infarction adopt an injury-specific phenotype promoting cardiac repair via macrophages in mice.; Nat Commun, 15: 6480 |
|
GSE268828 |
| Alsina-Sanchis, Elisenda et al. (2022) Endothelial RBPJ Is Essential for the Education of Tumor-Associated Macrophages.; Cancer Res, 82: 4414-4428 |
|
GSE213371 |
| Alsiraj, Yasir et al. (2017) Female Mice With an XY Sex Chromosome Complement Develop Severe Angiotensin II-Induced Abdominal Aortic Aneurysms.; Circulation, 135: 379-391 |
|
GSE81580 |
| Altarche-Xifro, Wassim et al. (2016) Functional Rescue of Dopaminergic Neuron Loss in Parkinson's Disease Mice After Transplantation of Hematopoietic Stem and Progenitor Cells.; EBioMedicine, 8: 83-95 |
|
GSE77527 |
| Altemeier, William A et al. (2005) Modulation of lipopolysaccharide-induced gene transcription and promotion of lung injury by mechanical ventilation.; J Immunol, 175: 3369-76 |
|
GSE2411 |
| Alter, Mark D et al. (2008) Variation in the large-scale organization of gene expression levels in the hippocampus relates to stable epigenetic variability in behavior.; PLoS One, 3: e3344 |
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GSE11680 GSE11679 |
| Alter, Mark D et al. (2011) Autism and increased paternal age related changes in global levels of gene expression regulation.; PLoS One, 6: e16715 |
|
GSE25507 |
| Althoff, K et al. (2015) A Cre-conditional MYCN-driven neuroblastoma mouse model as an improved tool for preclinical studies.; Oncogene, 34: 3357-68 |
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GSE57810 |
| Altintas, Dogus Murat et al. (2013) Differentially expressed androgen-regulated genes in androgen-sensitive tissues reveal potential biomarkers of early prostate cancer.; PLoS One, 8: e66278 |
|
GSE29232 |
| Altmüller, Franziska et al. (2017) Aberrant neuronal activity-induced signaling and gene expression in a mouse model of RASopathy.; PLoS Genet, 13: e1006684 |
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GSE80061 |
| Altug-Teber, O et al. (2007) Specific transcriptional changes in human fetuses with autosomal trisomies.; Cytogenet Genome Res, 119: 171-84 |
|
GSE6283 |
| Altıntaş, Ali et al. (2020) Transcriptomic and epigenomics atlas of myotubes reveals insight into the circadian control of metabolism and development.; Epigenomics, 12: 701-713 |
|
GSE131844 |
| Alugubelly, Navatha et al. (2019) Adolescent rat social play: Amygdalar proteomic and transcriptomic data.; Data Brief, 27: 104589 |
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GSE126023 |
| Alvarado, Sebastian et al. (2013) Methylated DNA binding domain protein 2 (MBD2) coordinately silences gene expression through activation of the microRNA hsa-mir-496 promoter in breast cancer cell line.; PLoS One, 8: e74009 |
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GSE47873 |
| Alvarez, Mariano J et al. (2018) A precision oncology approach to the pharmacological targeting of mechanistic dependencies in neuroendocrine tumors.; Nat Genet, 50: 979-989 |
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GSE96760 |
| Alvarez, Mariano J et al. [Unknown date]Functional characterization of somatic mutations in cancer using network-based inference of protein activity.; Nat Genet, 48: 838-47 |
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GSE45838 |
| Alvarez, Mariano Javier et al. (2009) Correlating measurements across samples improves accuracy of large-scale expression profile experiments.; Genome Biol, 10: R143 |
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GSE17172 |
| Alvarez, Sandy et al. (2023) Netrin1 patterns the dorsal spinal cord through modulation of Bmp signaling.; bioRxiv, [no vol.]: [no pages] |
|
GSE246903 |
| Alvarez-López, María Jesús et al. (2013) Long-term exercise modulates hippocampal gene expression in senescent female mice.; J Alzheimers Dis, 33: 1177-90 |
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GSE36571 |
| Alvarez-Saavedra, Matías et al. [Unknown date]Voluntary Running Triggers VGF-Mediated Oligodendrogenesis to Prolong the Lifespan of Snf2h-Null Ataxic Mice.; Cell Rep, 17: 862-875 |
|
GSE86235 |
| Alvarez-Vergara, Maria I et al. (2021) Non-productive angiogenesis disassembles Aß plaque-associated blood vessels.; Nat Commun, 12: 3098 |
|
GSE97423 GSE121729 |
| Alves, Chrystian J et al. (2015) Gene expression profiling for human iPS-derived motor neurons from sporadic ALS patients reveals a strong association between mitochondrial functions and neurodegeneration.; Front Cell Neurosci, 9: 289 |
|
GSE68240 |
| Alves, Hugo et al. (2012) A mesenchymal stromal cell gene signature for donor age.; PLoS One, 7: e42908 |
|
GSE39540 |
| Aly, Sahar et al. (2009) Mycobacteria-induced granuloma necrosis depends on IRF-1.; J Cell Mol Med, [no vol.]: [no pages] |
|
GSE11809 |
| Alzate-Correa, Diego et al. (2021) Light-induced changes in the suprachiasmatic nucleus transcriptome regulated by the ERK/MAPK pathway.; PLoS One, 16: e0249430 |
|
GSE165799 |
| Amamoto, Ryoji et al. (2020) FIN-Seq: transcriptional profiling of specific cell types from frozen archived tissue of the human central nervous system.; Nucleic Acids Res, 48: e4 |
|
GSE130143 |
| Amann, Lukas et al. (2024) Extrasinusoidal macrophages are a distinct subset of immunologically active dural macrophages.; Sci Immunol, 9: eadh1129 |
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GSE277981 |
| Amano, K et al. (2023) Pth1r Signal in Gli1+ Cells Maintains Postnatal Cranial Base Synchondrosis.; J Dent Res, 102: 1241-1251 |
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GSE230133 |
| Amano, K et al. (2024) Pth1r in Neural Crest Cells Regulates Nasal Cartilage Differentiation.; J Dent Res, 103: 308-317 |
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GSE214849 |
| Amano, Katsuhiko et al. (2020) Indian hedgehog in craniofacial neural crest cells links to skeletal malocclusion by regulating associated cartilage formation and gene expression.; FASEB J, [no vol.]: [no pages] |
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GSE134768 |
| Amano, Kenji et al. (2004) Dosage-dependent over-expression of genes in the trisomic region of Ts1Cje mouse model for Down syndrome.; Hum Mol Genet, 13: 1333-40 |
|
GSE1294 |
| Amar, Megha et al. (2021) Autism-linked Cullin3 germline haploinsufficiency impacts cytoskeletal dynamics and cortical neurogenesis through RhoA signaling.; Mol Psychiatry, 26: 3586-3613 |
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GSE144046 |
| Amato-Menker, Carly et al. (2023) XX sex chromosome complement modulates immune responses to heat-killed Streptococcus pneumoniae immunization in a microbiome-dependent manner.; Res Sq, [no vol.]: [no pages] |
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GSE244866 |
| Amaya, Laura et al. (2024) Pathways for macrophage uptake of cell-free circular RNAs.; Mol Cell, 84: 2104-2118.e6 |
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GSE264160 |
| Ambatipudi, Srikant et al. (2012) Genome-wide expression and copy number analysis identifies driver genes in gingivobuccal cancers.; Genes Chromosomes Cancer, 51: 161-73 |
|
GSE23558 |
| Ambrosini, Grazia et al. (2012) Identification of unique MEK-dependent genes in GNAQ mutant uveal melanoma involved in cell growth, tumor cell invasion, and MEK resistance.; Clin Cancer Res, 18: 3552-61 |
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GSE33655 |
| Ambrosini, Grazia et al. (2015) BRD4-targeted therapy induces Myc-independent cytotoxicity in Gnaq/11-mutatant uveal melanoma cells.; Oncotarget, 6: 33397-409 |
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GSE66048 |
| Ameku, Tomonaga et al. [Unknown date]Identification of MMP1 as a novel risk factor for intracranial aneurysms in ADPKD using iPSC models.; Sci Rep, 6: 30013 |
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GSE74452 |
| Ameling, Sabine et al. (2013) Myocardial gene expression profiles and cardiodepressant autoantibodies predict response of patients with dilated cardiomyopathy to immunoadsorption therapy.; Eur Heart J, 34: 666-75 |
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GSE17800 |
| Ameneiro, Cristina et al. (2020) BMAL1 coordinates energy metabolism and differentiation of pluripotent stem cells.; Life Sci Alliance, 3: [no pages] |
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GSE133908 |
| Amengual, Jaume et al. (2011) Beta-carotene reduces body adiposity of mice via BCMO1.; PLoS One, 6: e20644 |
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GSE27271 |
| Ament, Seth A et al. (2017) High resolution time-course mapping of early transcriptomic, molecular and cellular phenotypes in Huntington's disease CAG knock-in mice across multiple genetic backgrounds.; Hum Mol Genet, 26: 913-922 |
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GSE88920 |
| Ames, E G et al. (2013) Sequencing of mRNA identifies re-expression of fetal splice variants in cardiac hypertrophy.; J Mol Cell Cardiol, 62: 99-107 |
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GSE42411 |
| Amici, David R et al. (2023) The HAPSTR2 retrogene buffers stress signaling and resilience in mammals.; Nat Commun, 14: 152 |
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GSE219209 |
| Amin, Abdulbasit et al. (2023) Semaphorin 4B is an ADAM17-cleaved adipokine that inhibits adipocyte differentiation and thermogenesis.; Mol Metab, 73: 101731 |
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GSE228157 |
| Amin, Neal D et al. (2015) Loss of motoneuron-specific microRNA-218 causes systemic neuromuscular failure.; Science, 350: 1525-9 |
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GSE75599 |
| Amin, S B et al. (2014) Gene expression profile alone is inadequate in predicting complete response in multiple myeloma.; Leukemia, [no vol.]: [no pages] |
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GSE55145 |
| Amit, Ido et al. (2007) A module of negative feedback regulators defines growth factor signaling.; Nat Genet, [no vol.]: [no pages] |
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GSE6786 GSE6784 |
| Amlie-Wolf, Alexandre et al. (2015) Transcriptomic Changes Due to Cytoplasmic TDP-43 Expression Reveal Dysregulation of Histone Transcripts and Nuclear Chromatin.; PLoS One, 10: e0141836 |
|
GSE65973 |
| Amo-Aparicio, Jesus et al. (2021) Interleukin-4 and interleukin-13 induce different metabolic profiles in microglia and macrophages that relate with divergent outcomes after spinal cord injury.; Theranostics, 11: 9805-9820 |
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GSE158510 |
| Amodeo, Dionisio A et al. [Unknown date]Maternal immune activation impairs cognitive flexibility and alters transcription in frontal cortex.; Neurobiol Dis, 125: 211-218 |
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GSE137497 |
| Amodeo, Valeria et al. (2023) Diet suppresses glioblastoma initiation in mice by maintaining quiescence of mutation-bearing neural stem cells.; Dev Cell, 58: 836-846.e6 |
|
GSE165801 |
| Amram, N et al. [Unknown date]Sexual divergence in microtubule function: the novel intranasal microtubule targeting SKIP normalizes axonal transport and enhances memory.; Mol Psychiatry, 21: 1467-76 |
|
GSE72664 |
| An, Chung-Il et al. (2016) Transcriptome Dynamics and Potential Roles of Sox6 in the Postnatal Heart.; PLoS One, 11: e0166574 |
|
GSE60958 |
| An, Jie et al. (2011) Krüppel-like factor 4 (KLF4) directly regulates proliferation in thymocyte development and IL-17 expression during Th17 differentiation.; FASEB J, 25: 3634-45 |
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GSE24880 |
| An, Mi-Jin et al. (2024) Reorganization of H3K9me heterochromatin leads to neuronal impairment via the cascading destruction of the KDM3B-centered epigenomic network.; iScience, 27: 110380 |
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GSE216694 |
| An, Xiuli et al. (2014) Global transcriptome analyses of human and murine terminal erythroid differentiation.; Blood, 123: 3466-77 |
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GSE53983.1 GSE53983.2 |
| Anafi, Ron C et al. (2013) Sleep is not just for the brain: transcriptional responses to sleep in peripheral tissues.; BMC Genomics, 14: 362 |
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GSE42362 |
| Anagnostopoulos, Gerasimos et al. (2022) An obesogenic feedforward loop involving PPARγ, acyl-CoA binding protein and GABAAreceptor.; Cell Death Dis, 13: 356 |
|
GSE191004 |
| Anakk, Sayeepriyadarshini et al. (2011) Combined deletion of Fxr and Shp in mice induces Cyp17a1 and results in juvenile onset cholestasis.; J Clin Invest, 121: 86-95 |
|
GSE20599 |
| Anan, Go et al. (2022) Inhibition of sodium-glucose cotransporter 2 suppresses renal stone formation.; Pharmacol Res, 186: 106524 |
|
GSE202031 |
| Anand, Priti et al. (2013) BET bromodomains mediate transcriptional pause release in heart failure.; Cell, 154: 569-82 |
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GSE48110 |
| Anand, Rajat et al. (2017) Tracking disease progression by searching paths in a temporal network of biological processes.; PLoS One, 12: e0176172 |
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GSE63174 |
| Anandakrishnan, Ramu et al. (2022) Cranial manipulation affects cholinergic pathway gene expression in aged rats.; J Osteopath Med, 122: 95-103 |
|
GSE157736 |
| Anandasabapathy, Niroshana et al. (2011) Flt3L controls the development of radiosensitive dendritic cells in the meninges and choroid plexus of the steady-state mouse brain.; J Exp Med, 208: 1695-705 |
|
GSE29949 |
| Anandasabapathy, Niroshana et al. (2014) Classical Flt3L-dependent dendritic cells control immunity to protein vaccine.; J Exp Med, 211: 1875-91 |
|
GSE53588 |
| Anastasaki, Corina et al. (2020) Human iPSC-Derived Neurons and Cerebral Organoids Establish Differential Effects of Germline NF1 Gene Mutations.; Stem Cell Reports, 14: 541-550 |
|
GSE144601 |
| Anastasaki, Corina et al. (2022) Human induced pluripotent stem cell engineering establishes a humanized mouse platform for pediatric low-grade glioma modeling.; Acta Neuropathol Commun, 10: 120 |
|
GSE174624 |
| Anastassiou, Dimitris et al. (2011) Human cancer cells express Slug-based epithelial-mesenchymal transition gene expression signature obtained in vivo.; BMC Cancer, 11: 529 |
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GSE34481.1 GSE34481.2 |
| Andarawewa, Kumari L et al. (2007) Ionizing radiation predisposes nonmalignant human mammary epithelial cells to undergo transforming growth factor beta induced epithelial to mesenchymal transition.; Cancer Res, 67: 8662-70 |
|
GSE8240 |
| Andergassen, Daniel et al. (2017) Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression.; Elife, 6: [no pages] |
|
GSE75957 |
| Andergassen, Daniel et al. (2019) In vivoFirreandDxz4deletion elucidates roles for autosomal gene regulation.; Elife, 8: [no pages] |
|
GSE127554 |
| Anderle, Pascale et al. (2005) Novel markers of the human follicle-associated epithelium identified by genomic profiling and microdissection.; Gastroenterology, 129: 321-7 |
|
GSE1474 |
| Andero, Raül et al. (2013) Amygdala-dependent fear is regulated by Oprl1 in mice and humans with PTSD.; Sci Transl Med, 5: 188ra73 |
|
GSE44944 |
| Andero, Raül et al. (2014) A role for Tac2, NkB, and Nk3 receptor in normal and dysregulated fear memory consolidation.; Neuron, 83: 444-454 |
|
GSE57465 |
| Anders, Carey K et al. (2008) Age-specific differences in oncogenic pathway deregulation seen in human breast tumors.; PLoS One, 3: e1373 |
|
GSE7849 |
| Anders, Mario et al. (2013) Microarray meta-analysis defines global angiogenesis-related gene expression signatures in human carcinomas.; Mol Carcinog, [no vol.]: [no pages] |
|
GSE31905 |
| Andersen, Jesper B et al. (2010) An integrated genomic and epigenomic approach predicts therapeutic response to zebularine in human liver cancer.; Sci Transl Med, 2: 54ra77 |
|
GSE23991 |
| Andersen, Jesper B et al. (2012) Genomic and genetic characterization of cholangiocarcinoma identifies therapeutic targets for tyrosine kinase inhibitors.; Gastroenterology, [no vol.]: [no pages] |
|
GSE26566 |
| Andersen, Melvin E et al. (2010) Formaldehyde: integrating dosimetry, cytotoxicity, and genomics to understand dose-dependent transitions for an endogenous compound.; Toxicol Sci, 118: 716-31 |
|
GSE23179 |
| Andersen, Nicholas J et al. (2013) Pharmacologic inhibition of MEK signaling prevents growth of canine hemangiosarcoma.; Mol Cancer Ther, 12: 1701-14 |
|
GSE44115 |
| Anderson, Abraham A et al. (2009) Pancreatic islet expression profiling in diabetes-prone C57BLKS/J mice reveals transcriptional differences contributed by DBA loci, including Plagl1 and Nnt.; Pathogenetics, 2: 1 |
|
GSE11257 |
| Anderson, Ethan M et al. (2023) Epigenetic function during heroin self-administration controls future relapse-associated behavior in a cell type-specific manner.; Proc Natl Acad Sci U S A, 120: e2210953120 |
|
GSE199985 |
| Anderson, Gail D et al. (2015) Effect of Traumatic Brain Injury, Erythropoietin, and Anakinra on Hepatic Metabolizing Enzymes and Transporters in an Experimental Rat Model.; AAPS J, 17: 1255-67 |
|
GSE64886 |
| Anderson, Justin Q et al. (2022) Brain gene expression differences related to ethanol preference in the collaborative cross founder strains.; Front Behav Neurosci, 16: 992727 |
|
GSE212000 |
| Anderson, Mark A et al. (2016) Astrocyte scar formation aids central nervous system axon regeneration.; Nature, 532: 195-200 |
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GSE76097 |
| Anderson, Mark A et al. [Unknown date]Required growth facilitators propel axon regeneration across complete spinal cord injury.; Nature, 561: 396-400 |
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GSE111529 |