List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Alzofon, Nathaniel et al. (2021) Mastermind Like Transcriptional Coactivator 3 (MAML3) Drives Neuroendocrine Tumor Progression.; Mol Cancer Res, 19: 1476-1485 |
|
GSE174701 |
| Amamoto, Ryoji et al. (2020) FIN-Seq: transcriptional profiling of specific cell types from frozen archived tissue of the human central nervous system.; Nucleic Acids Res, 48: e4 |
|
GSE130143 |
| Amann, Lukas et al. (2024) Extrasinusoidal macrophages are a distinct subset of immunologically active dural macrophages.; Sci Immunol, 9: eadh1129 |
|
GSE277981 |
| Amano, Izuki et al. (2025) Effects of excessive iodine intake during the perinatal period on thyroid function and higher brain functions in mouse offspring.; Endocr J, [no vol.]: [no pages] |
|
GSE270137 |
| Amano, K et al. (2023) Pth1r Signal in Gli1+ Cells Maintains Postnatal Cranial Base Synchondrosis.; J Dent Res, 102: 1241-1251 |
|
GSE230133 |
| Amano, K et al. (2024) Pth1r in Neural Crest Cells Regulates Nasal Cartilage Differentiation.; J Dent Res, 103: 308-317 |
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GSE214849 |
| Amano, Katsuhiko et al. (2020) Indian hedgehog in craniofacial neural crest cells links to skeletal malocclusion by regulating associated cartilage formation and gene expression.; FASEB J, [no vol.]: [no pages] |
|
GSE134768 |
| Amano, Kenji et al. (2004) Dosage-dependent over-expression of genes in the trisomic region of Ts1Cje mouse model for Down syndrome.; Hum Mol Genet, 13: 1333-40 |
|
GSE1294 |
| Amar, Megha et al. (2021) Autism-linked Cullin3 germline haploinsufficiency impacts cytoskeletal dynamics and cortical neurogenesis through RhoA signaling.; Mol Psychiatry, 26: 3586-3613 |
|
GSE144046 |
| Amato-Menker, Carly et al. (2023) XX sex chromosome complement modulates immune responses to heat-killed Streptococcus pneumoniae immunization in a microbiome-dependent manner.; Res Sq, [no vol.]: [no pages] |
|
GSE244866 |
| Amaya, Laura et al. (2024) Pathways for macrophage uptake of cell-free circular RNAs.; Mol Cell, 84: 2104-2118.e6 |
|
GSE264160 |
| Ambatipudi, Srikant et al. (2012) Genome-wide expression and copy number analysis identifies driver genes in gingivobuccal cancers.; Genes Chromosomes Cancer, 51: 161-73 |
|
GSE23558 |
| Ambrosini, Grazia et al. (2012) Identification of unique MEK-dependent genes in GNAQ mutant uveal melanoma involved in cell growth, tumor cell invasion, and MEK resistance.; Clin Cancer Res, 18: 3552-61 |
|
GSE33655 |
| Ambrosini, Grazia et al. (2015) BRD4-targeted therapy induces Myc-independent cytotoxicity in Gnaq/11-mutatant uveal melanoma cells.; Oncotarget, 6: 33397-409 |
|
GSE66048 |
| Ameku, Tomonaga et al. (2016) Identification of MMP1 as a novel risk factor for intracranial aneurysms in ADPKD using iPSC models.; Sci Rep, 6: 30013 |
|
GSE74452 |
| Amelan, Alana et al. (2026) CRISPR knockout screens reveal genes and pathways essential for neuronal differentiation and implicate PEDS1 in neurodevelopment.; Nat Neurosci, 29: 592-603 |
|
GSE295884.2 GSE295884.1 |
| Ameling, Sabine et al. (2013) Myocardial gene expression profiles and cardiodepressant autoantibodies predict response of patients with dilated cardiomyopathy to immunoadsorption therapy.; Eur Heart J, 34: 666-75 |
|
GSE17800 |
| Ameneiro, Cristina et al. (2020) BMAL1 coordinates energy metabolism and differentiation of pluripotent stem cells.; Life Sci Alliance, 3: [no pages] |
|
GSE133908 |
| Amengual, Jaume et al. (2011) Beta-carotene reduces body adiposity of mice via BCMO1.; PLoS One, 6: e20644 |
|
GSE27271 |
| Ament, Seth A et al. (2017) High resolution time-course mapping of early transcriptomic, molecular and cellular phenotypes in Huntington's disease CAG knock-in mice across multiple genetic backgrounds.; Hum Mol Genet, 26: 913-922 |
|
GSE88920 |
| Ames, E G et al. (2013) Sequencing of mRNA identifies re-expression of fetal splice variants in cardiac hypertrophy.; J Mol Cell Cardiol, 62: 99-107 |
|
GSE42411 |
| Amici, David R et al. (2023) The HAPSTR2 retrogene buffers stress signaling and resilience in mammals.; Nat Commun, 14: 152 |
|
GSE219209 |
| Amin, Abdulbasit et al. (2023) Semaphorin 4B is an ADAM17-cleaved adipokine that inhibits adipocyte differentiation and thermogenesis.; Mol Metab, 73: 101731 |
|
GSE228157 |
| Amin, Neal D et al. (2015) Loss of motoneuron-specific microRNA-218 causes systemic neuromuscular failure.; Science, 350: 1525-9 |
|
GSE75599 |
| Amin, S B et al. (2014) Gene expression profile alone is inadequate in predicting complete response in multiple myeloma.; Leukemia, [no vol.]: [no pages] |
|
GSE55145 |
| Amit, Ido et al. (2007) A module of negative feedback regulators defines growth factor signaling.; Nat Genet, [no vol.]: [no pages] |
|
GSE6784 GSE6786 |
| Amlie-Wolf, Alexandre et al. (2015) Transcriptomic Changes Due to Cytoplasmic TDP-43 Expression Reveal Dysregulation of Histone Transcripts and Nuclear Chromatin.; PLoS One, 10: e0141836 |
|
GSE65973 |
| Amo-Aparicio, Jesus et al. (2021) Interleukin-4 and interleukin-13 induce different metabolic profiles in microglia and macrophages that relate with divergent outcomes after spinal cord injury.; Theranostics, 11: 9805-9820 |
|
GSE158510 |
| Amoasii, Leonela et al. (2019) NURR1 activation in skeletal muscle controls systemic energy homeostasis.; Proc Natl Acad Sci U S A, 116: 11299-11308 |
|
GSE130838 |
| Amodeo, Dionisio A et al. (2019) Maternal immune activation impairs cognitive flexibility and alters transcription in frontal cortex.; Neurobiol Dis, 125: 211-218 |
|
GSE137497 |
| Amodeo, Valeria et al. (2023) Diet suppresses glioblastoma initiation in mice by maintaining quiescence of mutation-bearing neural stem cells.; Dev Cell, 58: 836-846.e6 |
|
GSE165801 |
| Amodio, Giada et al. (2025) Specific types of male infertility are correlated with T cell exhaustion or senescence signatures.; Nat Commun, 16: 971 |
|
GSE253279 |
| Amram, N et al. (2016) Sexual divergence in microtubule function: the novel intranasal microtubule targeting SKIP normalizes axonal transport and enhances memory.; Mol Psychiatry, 21: 1467-76 |
|
GSE72664 |
| An, Boyang et al. (2023) Human-biased TMEM25 expression promotes expansion of neural progenitor cells to alter cortical structure in the developing brain.; FEBS Lett, 597: 2611-2625 |
|
GSE231982 |
| An, Chung-Il et al. (2016) Transcriptome Dynamics and Potential Roles of Sox6 in the Postnatal Heart.; PLoS One, 11: e0166574 |
|
GSE60958 |
| An, Dongju et al. (2025) PRMT1-mediated methylation regulates MLL2 stability and gene expression.; Nucleic Acids Res, 53: [no pages] |
|
GSE274754 |
| An, Jie et al. (2011) Krüppel-like factor 4 (KLF4) directly regulates proliferation in thymocyte development and IL-17 expression during Th17 differentiation.; FASEB J, 25: 3634-45 |
|
GSE24880 |
| An, Jie et al. (2025) Integration of metabolomic and transcriptomic analyses reveals regulatory functions of the ChREBP transcription factor in energy metabolism.; Cell Rep, 44: 115278 |
|
GSE282614 |
| An, Mi-Jin et al. (2024) Reorganization of H3K9me heterochromatin leads to neuronal impairment via the cascading destruction of the KDM3B-centered epigenomic network.; iScience, 27: 110380 |
|
GSE216694 |
| An, Xiuli et al. (2014) Global transcriptome analyses of human and murine terminal erythroid differentiation.; Blood, 123: 3466-77 |
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GSE53983.2 GSE53983.1 |
| Anafi, Ron C et al. (2013) Sleep is not just for the brain: transcriptional responses to sleep in peripheral tissues.; BMC Genomics, 14: 362 |
|
GSE42362 |
| Anagnostopoulos, Gerasimos et al. (2022) An obesogenic feedforward loop involving PPARγ, acyl-CoA binding protein and GABAAreceptor.; Cell Death Dis, 13: 356 |
|
GSE191004 |
| Anakk, Sayeepriyadarshini et al. (2011) Combined deletion of Fxr and Shp in mice induces Cyp17a1 and results in juvenile onset cholestasis.; J Clin Invest, 121: 86-95 |
|
GSE20599 |
| Anan, Go et al. (2022) Inhibition of sodium-glucose cotransporter 2 suppresses renal stone formation.; Pharmacol Res, 186: 106524 |
|
GSE202031 |
| Anand, Priti et al. (2013) BET bromodomains mediate transcriptional pause release in heart failure.; Cell, 154: 569-82 |
|
GSE48110 |
| Anand, Rajat et al. (2017) Tracking disease progression by searching paths in a temporal network of biological processes.; PLoS One, 12: e0176172 |
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GSE63174 |
| Anandakrishnan, Ramu et al. (2022) Cranial manipulation affects cholinergic pathway gene expression in aged rats.; J Osteopath Med, 122: 95-103 |
|
GSE157736 |
| Anandasabapathy, Niroshana et al. (2011) Flt3L controls the development of radiosensitive dendritic cells in the meninges and choroid plexus of the steady-state mouse brain.; J Exp Med, 208: 1695-705 |
|
GSE29949 |
| Anandasabapathy, Niroshana et al. (2014) Classical Flt3L-dependent dendritic cells control immunity to protein vaccine.; J Exp Med, 211: 1875-91 |
|
GSE53588 |
| Anastasaki, Corina et al. (2020) Human iPSC-Derived Neurons and Cerebral Organoids Establish Differential Effects of Germline NF1 Gene Mutations.; Stem Cell Reports, 14: 541-550 |
|
GSE144601 |
| Anastasaki, Corina et al. (2022) Human induced pluripotent stem cell engineering establishes a humanized mouse platform for pediatric low-grade glioma modeling.; Acta Neuropathol Commun, 10: 120 |
|
GSE174624 |
| Anastassiou, Dimitris et al. (2011) Human cancer cells express Slug-based epithelial-mesenchymal transition gene expression signature obtained in vivo.; BMC Cancer, 11: 529 |
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GSE34481.1 GSE34481.2 |
| Anda, Froylan Calderon de et al. (2016) Cortical neurons gradually attain a post-mitotic state.; Cell Res, 26: 1033-47 |
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GSE61845 |
| Andarawewa, Kumari L et al. (2007) Ionizing radiation predisposes nonmalignant human mammary epithelial cells to undergo transforming growth factor beta induced epithelial to mesenchymal transition.; Cancer Res, 67: 8662-70 |
|
GSE8240 |
| Andergassen, Daniel et al. (2017) Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression.; Elife, 6: [no pages] |
|
GSE75957 |
| Andergassen, Daniel et al. (2019) In vivoFirreandDxz4deletion elucidates roles for autosomal gene regulation.; Elife, 8: [no pages] |
|
GSE127554 |
| Anderle, Pascale et al. (2005) Novel markers of the human follicle-associated epithelium identified by genomic profiling and microdissection.; Gastroenterology, 129: 321-7 |
|
GSE1474 |
| Andero, Raül et al. (2013) Amygdala-dependent fear is regulated by Oprl1 in mice and humans with PTSD.; Sci Transl Med, 5: 188ra73 |
|
GSE44944 |
| Andero, Raül et al. (2014) A role for Tac2, NkB, and Nk3 receptor in normal and dysregulated fear memory consolidation.; Neuron, 83: 444-454 |
|
GSE57465 |
| Anders, Carey K et al. (2008) Age-specific differences in oncogenic pathway deregulation seen in human breast tumors.; PLoS One, 3: e1373 |
|
GSE7849 |
| Anders, Mario et al. (2013) Microarray meta-analysis defines global angiogenesis-related gene expression signatures in human carcinomas.; Mol Carcinog, [no vol.]: [no pages] |
|
GSE31905 |
| Andersen, Jesper B et al. (2010) An integrated genomic and epigenomic approach predicts therapeutic response to zebularine in human liver cancer.; Sci Transl Med, 2: 54ra77 |
|
GSE23991 |
| Andersen, Jesper B et al. (2012) Genomic and genetic characterization of cholangiocarcinoma identifies therapeutic targets for tyrosine kinase inhibitors.; Gastroenterology, [no vol.]: [no pages] |
|
GSE26566 |
| Andersen, Melvin E et al. (2010) Formaldehyde: integrating dosimetry, cytotoxicity, and genomics to understand dose-dependent transitions for an endogenous compound.; Toxicol Sci, 118: 716-31 |
|
GSE23179 |
| Andersen, Nicholas J et al. (2013) Pharmacologic inhibition of MEK signaling prevents growth of canine hemangiosarcoma.; Mol Cancer Ther, 12: 1701-14 |
|
GSE44115 |
| Anderson, Abraham A et al. (2009) Pancreatic islet expression profiling in diabetes-prone C57BLKS/J mice reveals transcriptional differences contributed by DBA loci, including Plagl1 and Nnt.; Pathogenetics, 2: 1 |
|
GSE11257 |
| Anderson, Ethan M et al. (2023) Epigenetic function during heroin self-administration controls future relapse-associated behavior in a cell type-specific manner.; Proc Natl Acad Sci U S A, 120: e2210953120 |
|
GSE199985 |
| Anderson, Gail D et al. (2015) Effect of Traumatic Brain Injury, Erythropoietin, and Anakinra on Hepatic Metabolizing Enzymes and Transporters in an Experimental Rat Model.; AAPS J, 17: 1255-67 |
|
GSE64886 |
| Anderson, Justin Q et al. (2022) Brain gene expression differences related to ethanol preference in the collaborative cross founder strains.; Front Behav Neurosci, 16: 992727 |
|
GSE212000 |
| Anderson, Justin Q et al. (2025) Genomic and Behavioral Signatures of Selection for Ethanol Preference from the Heterogeneous Stock Collaborative Cross Mice - The Central Nucleus of the Amygdala.; Addict Neurosci, 15: [no pages] |
|
GSE288772 |
| Anderson, Kimberley Jade et al. (2025) Androgens mediate sexual dimorphism in Pilarowski-Bjornsson Syndrome.; medRxiv, [no vol.]: [no pages] |
|
GSE281601 |
| Anderson, Mark A et al. (2016) Astrocyte scar formation aids central nervous system axon regeneration.; Nature, 532: 195-200 |
|
GSE76097 |
| Anderson, Mark A et al. (2018) Required growth facilitators propel axon regeneration across complete spinal cord injury.; Nature, 561: 396-400 |
|
GSE111529 |
| Anderson, Rebecca et al. (2022) Phase II trial of cytarabine and mitoxantrone with devimistat in acute myeloid leukemia.; Nat Commun, 13: 1673 |
|
GSE195933 |
| Anderson, Sarah R et al. (2019) Developmental Apoptosis Promotes a Disease-Related Gene Signature and Independence from CSF1R Signaling in Retinal Microglia.; Cell Rep, 27: 2002-2013.e5 |
|
GSE123757 |
| Anderson, Sarah Rose et al. (2022) Neuronal apoptosis drives remodeling states of microglia and shifts in survival pathway dependence.; Elife, 11: [no pages] |
|
GSE192601 |
| Anderson, Steven M et al. (2007) Key stages in mammary gland development. Secretory activation in the mammary gland: it's not just about milk protein synthesis!; Breast Cancer Res, 9: 204 |
|
GSE8191 |
| Anderson, Thea et al. (2023) Obesity during preclinical Alzheimer's disease development exacerbates brain metabolic decline.; J Neurochem, [no vol.]: [no pages] |
|
GSE254650 |
| Andersson, Ellinor et al. (2016) Expression profiling of small intestinal neuroendocrine tumors identifies subgroups with clinical relevance, prognostic markers and therapeutic targets.; Mod Pathol, 29: 616-29 |
|
GSE65286 |
| Andersson, Mattias K et al. (2017) Targeting the Oncogenic Transcriptional Regulator MYB in Adenoid Cystic Carcinoma by Inhibition of IGF1R/AKT Signaling.; J Natl Cancer Inst, 109: [no pages] |
|
GSE76094 |
| Andersson, Mattias K et al. (2020) ATR is a MYB regulated gene and potential therapeutic target in adenoid cystic carcinoma.; Oncogenesis, 9: 5 |
|
GSE136095 |
| Andrabi, Munazah et al. (2015) Comparative, transcriptome analysis of self-organizing optic tissues.; Sci Data, 2: 150030 |
|
GSE62432 |
| Andrade, Luciana Nogueira de Sousa et al. (2012) Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE36648 |
| Andrade-Navarro, Miguel A et al. (2020) RNA Sequencing of Human Peripheral Blood Cells Indicates Upregulation of Immune-Related Genes in Huntington's Disease.; Front Neurol, 11: 573560 |
|
GSE61405 |
| Andrae, Johanna et al. (2016) A role for PDGF-C/PDGFR? signaling in the formation of the meningeal basement membranes surrounding the cerebral cortex.; Biol Open, 5: 461-74 |
|
GSE67644 |
| Andre, Ralph et al. (2006) Gene regulation by IL-1beta independent of IL-1R1 in the mouse brain.; Glia, 53: 477-83 |
|
GSE4507 |
| Andreadou, Myrto et al. (2023) IL-12 sensing in neurons induces neuroprotective CNS tissue adaptation and attenuates neuroinflammation in mice.; Nat Neurosci, 26: 1701-1712 |
|
GSE236464 |
| Andreas, Kristin et al. (2009) Antirheumatic drug response signatures in human chondrocytes: potential molecular targets to stimulate cartilage regeneration.; Arthritis Res Ther, 11: R15 |
|
GSE12860 |
| Andreassi, Catia et al. (2021) Cytoplasmic cleavage of IMPA1 3' UTR is necessary for maintaining axon integrity.; Cell Rep, 34: 108778 |
|
GSE160025 |
| Andrechek, Eran R et al. (2008) Patterns of cell signaling pathway activation that characterize mammary development.; Development, 135: 2403-13 |
|
GSE11039 GSE11066 |
| Andrechek, Eran R et al. (2009) Genetic heterogeneity of Myc-induced mammary tumors reflecting diverse phenotypes including metastatic potential.; Proc Natl Acad Sci U S A, 106: 16387-92 |
|
GSE15904 |
| Andreev, Dmitry E et al. (2015) Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes.; Genome Biol, 16: 90 |
|
GSE60752 |
| Andreeva, Kalina et al. (2014) Time-dependent Gene Profiling Indicates the Presence of Different Phases for Ischemia/Reperfusion Injury in Retina.; Ophthalmol Eye Dis, 6: 43-54 |
|
GSE43671 |
| Andreone, Benjamin J et al. (2020) Alzheimer's-associated PLC?2 is a signaling node required for both TREM2 function and the inflammatory response in human microglia.; Nat Neurosci, [no vol.]: [no pages] |
|
GSE144120 |
| André-Schmutz, Isabelle et al. (2013) Genotoxic signature in cord blood cells of newborns exposed in utero to a Zidovudine-based antiretroviral combination.; J Infect Dis, 208: 235-43 |
|
GSE37748 |