List of all 17,685 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| An, Mi-Jin et al. (2024) Reorganization of H3K9me heterochromatin leads to neuronal impairment via the cascading destruction of the KDM3B-centered epigenomic network.; iScience, 27: 110380 |
|
GSE216694 |
| An, Xiuli et al. (2014) Global transcriptome analyses of human and murine terminal erythroid differentiation.; Blood, 123: 3466-77 |
|
GSE53983.1 GSE53983.2 |
| Anafi, Ron C et al. (2013) Sleep is not just for the brain: transcriptional responses to sleep in peripheral tissues.; BMC Genomics, 14: 362 |
|
GSE42362 |
| Anagnostopoulos, Gerasimos et al. (2022) An obesogenic feedforward loop involving PPARγ, acyl-CoA binding protein and GABAAreceptor.; Cell Death Dis, 13: 356 |
|
GSE191004 |
| Anakk, Sayeepriyadarshini et al. (2011) Combined deletion of Fxr and Shp in mice induces Cyp17a1 and results in juvenile onset cholestasis.; J Clin Invest, 121: 86-95 |
|
GSE20599 |
| Anan, Go et al. (2022) Inhibition of sodium-glucose cotransporter 2 suppresses renal stone formation.; Pharmacol Res, 186: 106524 |
|
GSE202031 |
| Anand, Priti et al. (2013) BET bromodomains mediate transcriptional pause release in heart failure.; Cell, 154: 569-82 |
|
GSE48110 |
| Anand, Rajat et al. (2017) Tracking disease progression by searching paths in a temporal network of biological processes.; PLoS One, 12: e0176172 |
|
GSE63174 |
| Anandakrishnan, Ramu et al. (2022) Cranial manipulation affects cholinergic pathway gene expression in aged rats.; J Osteopath Med, 122: 95-103 |
|
GSE157736 |
| Anandasabapathy, Niroshana et al. (2011) Flt3L controls the development of radiosensitive dendritic cells in the meninges and choroid plexus of the steady-state mouse brain.; J Exp Med, 208: 1695-705 |
|
GSE29949 |
| Anandasabapathy, Niroshana et al. (2014) Classical Flt3L-dependent dendritic cells control immunity to protein vaccine.; J Exp Med, 211: 1875-91 |
|
GSE53588 |
| Anastasaki, Corina et al. (2020) Human iPSC-Derived Neurons and Cerebral Organoids Establish Differential Effects of Germline NF1 Gene Mutations.; Stem Cell Reports, 14: 541-550 |
|
GSE144601 |
| Anastasaki, Corina et al. (2022) Human induced pluripotent stem cell engineering establishes a humanized mouse platform for pediatric low-grade glioma modeling.; Acta Neuropathol Commun, 10: 120 |
|
GSE174624 |
| Anastassiou, Dimitris et al. (2011) Human cancer cells express Slug-based epithelial-mesenchymal transition gene expression signature obtained in vivo.; BMC Cancer, 11: 529 |
|
GSE34481.1 GSE34481.2 |
| Andarawewa, Kumari L et al. (2007) Ionizing radiation predisposes nonmalignant human mammary epithelial cells to undergo transforming growth factor beta induced epithelial to mesenchymal transition.; Cancer Res, 67: 8662-70 |
|
GSE8240 |
| Andergassen, Daniel et al. (2017) Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression.; Elife, 6: [no pages] |
|
GSE75957 |
| Andergassen, Daniel et al. (2019) In vivoFirreandDxz4deletion elucidates roles for autosomal gene regulation.; Elife, 8: [no pages] |
|
GSE127554 |
| Anderle, Pascale et al. (2005) Novel markers of the human follicle-associated epithelium identified by genomic profiling and microdissection.; Gastroenterology, 129: 321-7 |
|
GSE1474 |
| Andero, Raül et al. (2013) Amygdala-dependent fear is regulated by Oprl1 in mice and humans with PTSD.; Sci Transl Med, 5: 188ra73 |
|
GSE44944 |
| Andero, Raül et al. (2014) A role for Tac2, NkB, and Nk3 receptor in normal and dysregulated fear memory consolidation.; Neuron, 83: 444-454 |
|
GSE57465 |
| Anders, Carey K et al. (2008) Age-specific differences in oncogenic pathway deregulation seen in human breast tumors.; PLoS One, 3: e1373 |
|
GSE7849 |
| Anders, Mario et al. (2013) Microarray meta-analysis defines global angiogenesis-related gene expression signatures in human carcinomas.; Mol Carcinog, [no vol.]: [no pages] |
|
GSE31905 |
| Andersen, Jesper B et al. (2010) An integrated genomic and epigenomic approach predicts therapeutic response to zebularine in human liver cancer.; Sci Transl Med, 2: 54ra77 |
|
GSE23991 |
| Andersen, Jesper B et al. (2012) Genomic and genetic characterization of cholangiocarcinoma identifies therapeutic targets for tyrosine kinase inhibitors.; Gastroenterology, [no vol.]: [no pages] |
|
GSE26566 |
| Andersen, Melvin E et al. (2010) Formaldehyde: integrating dosimetry, cytotoxicity, and genomics to understand dose-dependent transitions for an endogenous compound.; Toxicol Sci, 118: 716-31 |
|
GSE23179 |
| Andersen, Nicholas J et al. (2013) Pharmacologic inhibition of MEK signaling prevents growth of canine hemangiosarcoma.; Mol Cancer Ther, 12: 1701-14 |
|
GSE44115 |
| Anderson, Abraham A et al. (2009) Pancreatic islet expression profiling in diabetes-prone C57BLKS/J mice reveals transcriptional differences contributed by DBA loci, including Plagl1 and Nnt.; Pathogenetics, 2: 1 |
|
GSE11257 |
| Anderson, Ethan M et al. (2023) Epigenetic function during heroin self-administration controls future relapse-associated behavior in a cell type-specific manner.; Proc Natl Acad Sci U S A, 120: e2210953120 |
|
GSE199985 |
| Anderson, Gail D et al. (2015) Effect of Traumatic Brain Injury, Erythropoietin, and Anakinra on Hepatic Metabolizing Enzymes and Transporters in an Experimental Rat Model.; AAPS J, 17: 1255-67 |
|
GSE64886 |
| Anderson, Justin Q et al. (2022) Brain gene expression differences related to ethanol preference in the collaborative cross founder strains.; Front Behav Neurosci, 16: 992727 |
|
GSE212000 |
| Anderson, Kimberley Jade et al. (2025) Androgens mediate sexual dimorphism in Pilarowski-Bjornsson Syndrome.; medRxiv, [no vol.]: [no pages] |
|
GSE281601 |
| Anderson, Mark A et al. (2016) Astrocyte scar formation aids central nervous system axon regeneration.; Nature, 532: 195-200 |
|
GSE76097 |
| Anderson, Mark A et al. (2018) Required growth facilitators propel axon regeneration across complete spinal cord injury.; Nature, 561: 396-400 |
|
GSE111529 |
| Anderson, Rebecca et al. (2022) Phase II trial of cytarabine and mitoxantrone with devimistat in acute myeloid leukemia.; Nat Commun, 13: 1673 |
|
GSE195933 |
| Anderson, Sarah R et al. (2019) Developmental Apoptosis Promotes a Disease-Related Gene Signature and Independence from CSF1R Signaling in Retinal Microglia.; Cell Rep, 27: 2002-2013.e5 |
|
GSE123757 |
| Anderson, Sarah Rose et al. (2022) Neuronal apoptosis drives remodeling states of microglia and shifts in survival pathway dependence.; Elife, 11: [no pages] |
|
GSE192601 |
| Anderson, Steven M et al. (2007) Key stages in mammary gland development. Secretory activation in the mammary gland: it's not just about milk protein synthesis!; Breast Cancer Res, 9: 204 |
|
GSE8191 |
| Anderson, Thea et al. (2023) Obesity during preclinical Alzheimer's disease development exacerbates brain metabolic decline.; J Neurochem, [no vol.]: [no pages] |
|
GSE254650 |
| Andersson, Ellinor et al. (2016) Expression profiling of small intestinal neuroendocrine tumors identifies subgroups with clinical relevance, prognostic markers and therapeutic targets.; Mod Pathol, 29: 616-29 |
|
GSE65286 |
| Andersson, Mattias K et al. (2017) Targeting the Oncogenic Transcriptional Regulator MYB in Adenoid Cystic Carcinoma by Inhibition of IGF1R/AKT Signaling.; J Natl Cancer Inst, 109: [no pages] |
|
GSE76094 |
| Andersson, Mattias K et al. (2020) ATR is a MYB regulated gene and potential therapeutic target in adenoid cystic carcinoma.; Oncogenesis, 9: 5 |
|
GSE136095 |
| Andrabi, Munazah et al. (2015) Comparative, transcriptome analysis of self-organizing optic tissues.; Sci Data, 2: 150030 |
|
GSE62432 |
| Andrade, Luciana Nogueira de Sousa et al. (2012) Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE36648 |
| Andrade-Navarro, Miguel A et al. (2020) RNA Sequencing of Human Peripheral Blood Cells Indicates Upregulation of Immune-Related Genes in Huntington's Disease.; Front Neurol, 11: 573560 |
|
GSE61405 |
| Andrae, Johanna et al. (2016) A role for PDGF-C/PDGFR? signaling in the formation of the meningeal basement membranes surrounding the cerebral cortex.; Biol Open, 5: 461-74 |
|
GSE67644 |
| Andre, Ralph et al. (2006) Gene regulation by IL-1beta independent of IL-1R1 in the mouse brain.; Glia, 53: 477-83 |
|
GSE4507 |
| Andreadou, Myrto et al. (2023) IL-12 sensing in neurons induces neuroprotective CNS tissue adaptation and attenuates neuroinflammation in mice.; Nat Neurosci, 26: 1701-1712 |
|
GSE236464 |
| Andreas, Kristin et al. (2009) Antirheumatic drug response signatures in human chondrocytes: potential molecular targets to stimulate cartilage regeneration.; Arthritis Res Ther, 11: R15 |
|
GSE12860 |
| Andreassi, Catia et al. (2021) Cytoplasmic cleavage of IMPA1 3' UTR is necessary for maintaining axon integrity.; Cell Rep, 34: 108778 |
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GSE160025 |
| Andrechek, Eran R et al. (2008) Patterns of cell signaling pathway activation that characterize mammary development.; Development, 135: 2403-13 |
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GSE11066 GSE11039 |
| Andrechek, Eran R et al. (2009) Genetic heterogeneity of Myc-induced mammary tumors reflecting diverse phenotypes including metastatic potential.; Proc Natl Acad Sci U S A, 106: 16387-92 |
|
GSE15904 |
| Andreev, Dmitry E et al. (2015) Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes.; Genome Biol, 16: 90 |
|
GSE60752 |
| Andreeva, Kalina et al. (2014) Time-dependent Gene Profiling Indicates the Presence of Different Phases for Ischemia/Reperfusion Injury in Retina.; Ophthalmol Eye Dis, 6: 43-54 |
|
GSE43671 |
| Andreone, Benjamin J et al. (2020) Alzheimer's-associated PLC?2 is a signaling node required for both TREM2 function and the inflammatory response in human microglia.; Nat Neurosci, [no vol.]: [no pages] |
|
GSE144120 |
| Andrew, Angeline S et al. (2007) Exposure to arsenic at levels found inU.S. drinking water modifies expression in the mouse lung.; Toxicol Sci, 100: 75-87 |
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GSE9630.2 GSE9630.1 |
| Andrew, Tom W et al. (2022) Sexually dimorphic estrogen sensing in skeletal stem cells controls skeletal regeneration.; Nat Commun, 13: 6491 |
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GSE213574 |
| Androvic, Peter et al. (2020) Decoding the Transcriptional Response to Ischemic Stroke in Young and Aged Mouse Brain.; Cell Rep, 31: 107777 |
|
GSE137482 |
| André-Schmutz, Isabelle et al. (2013) Genotoxic signature in cord blood cells of newborns exposed in utero to a Zidovudine-based antiretroviral combination.; J Infect Dis, 208: 235-43 |
|
GSE37748 |
| Andzelm, Milena M et al. (2015) MEF2D drives photoreceptor development through a genome-wide competition for tissue-specific enhancers.; Neuron, 86: 247-63 |
|
GSE61389 |
| Ang, Cheen Euong et al. (2019) The novel lncRNAlnc-NR2F1is pro-neurogenic and mutated in human neurodevelopmental disorders.; Elife, 8: [no pages] |
|
GSE115077 |
| Ang, Yen-Sin et al. (2011) Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network.; Cell, 145: 183-97 |
|
GSE19588.1 GSE19588.2 |
| Anglesio, M S et al. (2013) Cancer-associated somatic DICER1 hotspot mutations cause defective miRNA processing and reverse-strand expression bias to predominantly mature 3p strands through loss of 5p strand cleavage.; J Pathol, 229: 400-9 |
|
GSE40965 |
| Anglesio, Michael S et al. (2008) Mutation of ERBB2 provides a novel alternative mechanism for the ubiquitous activation of RAS-MAPK in ovarian serous low malignant potential tumors.; Mol Cancer Res, 6: 1678-90 |
|
GSE12172 |
| Angus-Hill, Melinda L et al. (2011) T-cell factor 4 functions as a tumor suppressor whose disruption modulates colon cell proliferation and tumorigenesis.; Proc Natl Acad Sci U S A, 108: 4914-9 |
|
GSE27522 |
| Anichini, Andrea et al. (2022) Landscape of immune-related signatures induced by targeting of different epigenetic regulators in melanoma: implications for immunotherapy.; J Exp Clin Cancer Res, 41: 325 |
|
GSE189629 GSE189628 GSE189630 |
| Anido, Judit et al. (2010) TGF-? Receptor Inhibitors Target the CD44(high)/Id1(high) Glioma-Initiating Cell Population in Human Glioblastoma.; Cancer Cell, 18: 655-68 |
|
GSE23935 |
| Anier, Kaili et al. (2013) S-adenosylmethionine modifies cocaine-induced DNA methylation and increases locomotor sensitization in mice.; Int J Neuropsychopharmacol, [no vol.]: 1-14 |
|
GSE48365 |
| Anirudh, Subramanian et al. (2020) TNFα Rescues Dendritic Cell Development in Hematopoietic Stem and Progenitor Cells Lacking C/EBPα.; Cells, 9: [no pages] |
|
GSE146288 |
| Anirudhan, Jithu et al. (2025) Novel Insights into Emx2 and Dmrta2 Cooperation during Cortex Development and Evidence for Dmrta2 Function in the Choroid Plexus.; J Neurosci, 45: [no pages] |
|
GSE277662 |
| Annibali, Viviana et al. (2011) CD161(high)CD8+T cells bear pathogenetic potential in multiple sclerosis.; Brain, 134: 542-54 |
|
GSE16461 |
| Annibali, Viviana et al. (2018) Analysis of coding and non-coding transcriptome of peripheral B cells reveals an altered interferon response factor (IRF)-1 pathway in multiple sclerosis patients.; J Neuroimmunol, 324: 165-171 |
|
GSE117935 |
| Anthérieu, Sébastien et al. (2014) Chronic exposure to low doses of pharmaceuticals disturbs the hepatic expression of circadian genes in lean and obese mice.; Toxicol Appl Pharmacol, 276: 63-72 |
|
GSE49195 |
| Antico Arciuch, Valeria G et al. (2011) Thyrocyte-specific inactivation of p53 and Pten results in anaplastic thyroid carcinomas faithfully recapitulating human tumors.; Oncotarget, 2: 1109-26 |
|
GSE30427 |
| Antipova, Alena A et al. (2008) Gene expression-based screening for inhibitors of PDGFR signaling.; Genome Biol, 9: R47 |
|
GSE7403 |
| Antolic, Andrew et al. (2020) BET bromodomain proteins regulate transcriptional reprogramming in genetic dilated cardiomyopathy.; JCI Insight, 5: [no pages] |
|
GSE152005 |
| Antonell, Anna et al. (2013) A preliminary study of the whole-genome expression profile of sporadic and monogenic early-onset Alzheimer's disease.; Neurobiol Aging, 34: 1772-8 |
|
GSE39420 |
| Antonio Urrutia, Gustavo et al. (2021) ZFP451-mediated SUMOylation of SATB2 drives embryonic stem cell differentiation.; Genes Dev, 35: 1142-1160 |
|
GSE119990 |
| Antoniou, Panagiotis et al. (2022) Base-editing-mediated dissection of a γ-globin cis-regulatory element for the therapeutic reactivation of fetal hemoglobin expression.; Nat Commun, 13: 6618 |
|
GSE191135 |
| Antunes, Cláudia et al. (2020) Tet3 ablation in adult brain neurons increases anxiety-like behavior and regulates cognitive function in mice.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE140850 |
| Anvar, Seyed Yahya et al. (2011) Deregulation of the ubiquitin-proteasome system is the predominant molecular pathology in OPMD animal models and patients.; Skelet Muscle, 1: 15 |
|
GSE26605 |
| Aníbal-Martínez, Mar et al. (2025) A prenatal window for enhancing spatial resolution of cortical barrel maps.; Nat Commun, 16: 1955 |
|
GSE260865 |
| Aoki, Hitomi et al. (2012) Genetic ablation of Rest leads to in vitro-specific derepression of neuronal genes during neurogenesis.; Development, 139: 667-77 |
|
GSE34625 |
| Aoki, Kazunari et al. (2024) Canonical BAF complex regulates the oncogenic program in human T-cell acute lymphoblastic leukemia.; Blood, 143: 604-618 |
|
GSE227274 |
| Aoshima, Kota et al. (2025) Establishment of human Leber's hereditary optic neuropathy model using iPSC-derived retinal organoids.; Front Cell Neurosci, 19: 1635775 |
|
GSE305550 |
| Aparisi Rey, Alejandro et al. (2019) Gadd45? modulates aversive learning through post-transcriptional regulation of memory-related mRNAs.; EMBO Rep, 20: [no pages] |
|
GSE100923 |
| Apelblat, Daniella et al. (2022) Meso-seq for in-depth transcriptomics in ultra-low amounts of FACS-purified neuronal nuclei.; Cell Rep Methods, 2: 100259 |
|
GSE185221 |
| Apfelbaum, April A et al. (2025) A diverse landscape of FGFR alterations and co-mutations suggests potential therapeutic strategies in pediatric low-grade gliomas.; Nat Commun, 16: 7018 |
|
GSE273989 |
| Apostol, Barbara L et al. (2006) Mutant huntingtin alters MAPK signaling pathways in PC12 and striatal cells: ERK1/2 protects against mutant huntingtin-associated toxicity.; Hum Mol Genet, 15: 273-85 |
|
GSE2602 |
| Apostolides, Michael et al. (2024) Accurate isoform quantification by joint short- and long-read RNA-sequencing.; bioRxiv, [no vol.]: [no pages] |
|
GSE271528 |
| Apostolidis, Sokratis A et al. (2013) Protein phosphatase 2A enables expression of interleukin 17 (IL-17) through chromatin remodeling.; J Biol Chem, [no vol.]: [no pages] |
|
GSE49466 |
| Apostolopoulou, Maria et al. (2017) Non-monotonic Changes in Progenitor Cell Behavior and Gene Expression during Aging of the Adult V-SVZ Neural Stem Cell Niche.; Stem Cell Reports, 9: 1931-1947 |
|
GSE104651 |
| Appel, Elena et al. (2016) An ensemble of regulatory elements controls Runx3 spatiotemporal expression in subsets of dorsal root ganglia proprioceptive neurons.; Genes Dev, 30: 2607-2622 |
|
GSE81140 |
| Appleton, C T G et al. (2007) Global analyses of gene expression in early experimental osteoarthritis.; Arthritis Rheum, 56: 1854-68 |
|
GSE8077 |