List of all 16,681 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Anderson, Rebecca et al. (2022) Phase II trial of cytarabine and mitoxantrone with devimistat in acute myeloid leukemia.; Nat Commun, 13: 1673 |
|
GSE195933 |
| Anderson, Sarah R et al. [Unknown date]Developmental Apoptosis Promotes a Disease-Related Gene Signature and Independence from CSF1R Signaling in Retinal Microglia.; Cell Rep, 27: 2002-2013.e5 |
|
GSE123757 |
| Anderson, Sarah Rose et al. (2022) Neuronal apoptosis drives remodeling states of microglia and shifts in survival pathway dependence.; Elife, 11: [no pages] |
|
GSE192601 |
| Anderson, Steven M et al. (2007) Key stages in mammary gland development. Secretory activation in the mammary gland: it's not just about milk protein synthesis!; Breast Cancer Res, 9: 204 |
|
GSE8191 |
| Anderson, Thea et al. (2023) Obesity during preclinical Alzheimer's disease development exacerbates brain metabolic decline.; J Neurochem, [no vol.]: [no pages] |
|
GSE254650 |
| Andersson, Ellinor et al. (2016) Expression profiling of small intestinal neuroendocrine tumors identifies subgroups with clinical relevance, prognostic markers and therapeutic targets.; Mod Pathol, 29: 616-29 |
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GSE65286 |
| Andersson, Mattias K et al. (2017) Targeting the Oncogenic Transcriptional Regulator MYB in Adenoid Cystic Carcinoma by Inhibition of IGF1R/AKT Signaling.; J Natl Cancer Inst, 109: [no pages] |
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GSE76094 |
| Andersson, Mattias K et al. (2020) ATR is a MYB regulated gene and potential therapeutic target in adenoid cystic carcinoma.; Oncogenesis, 9: 5 |
|
GSE136095 |
| Andrabi, Munazah et al. (2015) Comparative, transcriptome analysis of self-organizing optic tissues.; Sci Data, 2: 150030 |
|
GSE62432 |
| Andrade, Luciana Nogueira de Sousa et al. (2012) Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE36648 |
| Andrade-Navarro, Miguel A et al. (2020) RNA Sequencing of Human Peripheral Blood Cells Indicates Upregulation of Immune-Related Genes in Huntington's Disease.; Front Neurol, 11: 573560 |
|
GSE61405 |
| Andrae, Johanna et al. (2016) A role for PDGF-C/PDGFR? signaling in the formation of the meningeal basement membranes surrounding the cerebral cortex.; Biol Open, 5: 461-74 |
|
GSE67644 |
| Andre, Ralph et al. (2006) Gene regulation by IL-1beta independent of IL-1R1 in the mouse brain.; Glia, 53: 477-83 |
|
GSE4507 |
| Andreadou, Myrto et al. (2023) IL-12 sensing in neurons induces neuroprotective CNS tissue adaptation and attenuates neuroinflammation in mice.; Nat Neurosci, 26: 1701-1712 |
|
GSE236464 |
| Andreas, Kristin et al. (2009) Antirheumatic drug response signatures in human chondrocytes: potential molecular targets to stimulate cartilage regeneration.; Arthritis Res Ther, 11: R15 |
|
GSE12860 |
| Andreassi, Catia et al. (2021) Cytoplasmic cleavage of IMPA1 3' UTR is necessary for maintaining axon integrity.; Cell Rep, 34: 108778 |
|
GSE160025 |
| Andrechek, Eran R et al. (2008) Patterns of cell signaling pathway activation that characterize mammary development.; Development, 135: 2403-13 |
|
GSE11066 GSE11039 |
| Andrechek, Eran R et al. (2009) Genetic heterogeneity of Myc-induced mammary tumors reflecting diverse phenotypes including metastatic potential.; Proc Natl Acad Sci U S A, 106: 16387-92 |
|
GSE15904 |
| Andreev, Dmitry E et al. (2015) Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes.; Genome Biol, 16: 90 |
|
GSE60752 |
| Andreeva, Kalina et al. (2014) Time-dependent Gene Profiling Indicates the Presence of Different Phases for Ischemia/Reperfusion Injury in Retina.; Ophthalmol Eye Dis, 6: 43-54 |
|
GSE43671 |
| Andreone, Benjamin J et al. (2020) Alzheimer's-associated PLC?2 is a signaling node required for both TREM2 function and the inflammatory response in human microglia.; Nat Neurosci, [no vol.]: [no pages] |
|
GSE144120 |
| Andrew, Angeline S et al. (2007) Exposure to arsenic at levels found inU.S. drinking water modifies expression in the mouse lung.; Toxicol Sci, 100: 75-87 |
|
GSE9630 |
| Andrew, Tom W et al. (2022) Sexually dimorphic estrogen sensing in skeletal stem cells controls skeletal regeneration.; Nat Commun, 13: 6491 |
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GSE213574 |
| Androvic, Peter et al. (2020) Decoding the Transcriptional Response to Ischemic Stroke in Young and Aged Mouse Brain.; Cell Rep, 31: 107777 |
|
GSE137482 |
| André-Schmutz, Isabelle et al. (2013) Genotoxic signature in cord blood cells of newborns exposed in utero to a Zidovudine-based antiretroviral combination.; J Infect Dis, 208: 235-43 |
|
GSE37748 |
| Andzelm, Milena M et al. (2015) MEF2D drives photoreceptor development through a genome-wide competition for tissue-specific enhancers.; Neuron, 86: 247-63 |
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GSE61389 |
| Ang, Cheen Euong et al. (2019) The novel lncRNAlnc-NR2F1is pro-neurogenic and mutated in human neurodevelopmental disorders.; Elife, 8: [no pages] |
|
GSE115077 |
| Ang, Yen-Sin et al. (2011) Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network.; Cell, 145: 183-97 |
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GSE19588.1 GSE19588.2 |
| Anglesio, M S et al. (2013) Cancer-associated somatic DICER1 hotspot mutations cause defective miRNA processing and reverse-strand expression bias to predominantly mature 3p strands through loss of 5p strand cleavage.; J Pathol, 229: 400-9 |
|
GSE40965 |
| Anglesio, Michael S et al. (2008) Mutation of ERBB2 provides a novel alternative mechanism for the ubiquitous activation of RAS-MAPK in ovarian serous low malignant potential tumors.; Mol Cancer Res, 6: 1678-90 |
|
GSE12172 |
| Angus-Hill, Melinda L et al. (2011) T-cell factor 4 functions as a tumor suppressor whose disruption modulates colon cell proliferation and tumorigenesis.; Proc Natl Acad Sci U S A, 108: 4914-9 |
|
GSE27522 |
| Anichini, Andrea et al. (2022) Landscape of immune-related signatures induced by targeting of different epigenetic regulators in melanoma: implications for immunotherapy.; J Exp Clin Cancer Res, 41: 325 |
|
GSE189629 GSE189628 GSE189630 |
| Anido, Judit et al. (2010) TGF-? Receptor Inhibitors Target the CD44(high)/Id1(high) Glioma-Initiating Cell Population in Human Glioblastoma.; Cancer Cell, 18: 655-68 |
|
GSE23935 |
| Anier, Kaili et al. (2013) S-adenosylmethionine modifies cocaine-induced DNA methylation and increases locomotor sensitization in mice.; Int J Neuropsychopharmacol, [no vol.]: 1-14 |
|
GSE48365 |
| Anirudh, Subramanian et al. (2020) TNFα Rescues Dendritic Cell Development in Hematopoietic Stem and Progenitor Cells Lacking C/EBPα.; Cells, 9: [no pages] |
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GSE146288 |
| Annibali, Viviana et al. (2011) CD161(high)CD8+T cells bear pathogenetic potential in multiple sclerosis.; Brain, 134: 542-54 |
|
GSE16461 |
| Annibali, Viviana et al. (2018) Analysis of coding and non-coding transcriptome of peripheral B cells reveals an altered interferon response factor (IRF)-1 pathway in multiple sclerosis patients.; J Neuroimmunol, 324: 165-171 |
|
GSE117935 |
| Anthérieu, Sébastien et al. (2014) Chronic exposure to low doses of pharmaceuticals disturbs the hepatic expression of circadian genes in lean and obese mice.; Toxicol Appl Pharmacol, 276: 63-72 |
|
GSE49195 |
| Antico Arciuch, Valeria G et al. (2011) Thyrocyte-specific inactivation of p53 and Pten results in anaplastic thyroid carcinomas faithfully recapitulating human tumors.; Oncotarget, 2: 1109-26 |
|
GSE30427 |
| Antipova, Alena A et al. (2008) Gene expression-based screening for inhibitors of PDGFR signaling.; Genome Biol, 9: R47 |
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GSE7403 |
| Antolic, Andrew et al. (2020) BET bromodomain proteins regulate transcriptional reprogramming in genetic dilated cardiomyopathy.; JCI Insight, 5: [no pages] |
|
GSE152005 |
| Antonell, Anna et al. (2013) A preliminary study of the whole-genome expression profile of sporadic and monogenic early-onset Alzheimer's disease.; Neurobiol Aging, 34: 1772-8 |
|
GSE39420 |
| Antonio Urrutia, Gustavo et al. (2021) ZFP451-mediated SUMOylation of SATB2 drives embryonic stem cell differentiation.; Genes Dev, 35: 1142-1160 |
|
GSE119990 |
| Antoniou, Panagiotis et al. (2022) Base-editing-mediated dissection of a γ-globin cis-regulatory element for the therapeutic reactivation of fetal hemoglobin expression.; Nat Commun, 13: 6618 |
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GSE191135 |
| Antunes, Cláudia et al. (2020) Tet3 ablation in adult brain neurons increases anxiety-like behavior and regulates cognitive function in mice.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE140850 |
| Anvar, Seyed Yahya et al. (2011) Deregulation of the ubiquitin-proteasome system is the predominant molecular pathology in OPMD animal models and patients.; Skelet Muscle, 1: 15 |
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GSE26605 |
| Aníbal-Martínez, Mar et al. (2025) A prenatal window for enhancing spatial resolution of cortical barrel maps.; Nat Commun, 16: 1955 |
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GSE260865 |
| Aoki, Hitomi et al. (2012) Genetic ablation of Rest leads to in vitro-specific derepression of neuronal genes during neurogenesis.; Development, 139: 667-77 |
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GSE34625 |
| Aoki, Kazunari et al. (2024) Canonical BAF complex regulates the oncogenic program in human T-cell acute lymphoblastic leukemia.; Blood, 143: 604-618 |
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GSE227274 |
| Aparisi Rey, Alejandro et al. (2019) Gadd45? modulates aversive learning through post-transcriptional regulation of memory-related mRNAs.; EMBO Rep, 20: [no pages] |
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GSE100923 |
| Apelblat, Daniella et al. (2022) Meso-seq for in-depth transcriptomics in ultra-low amounts of FACS-purified neuronal nuclei.; Cell Rep Methods, 2: 100259 |
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GSE185221 |
| Apostol, Barbara L et al. (2006) Mutant huntingtin alters MAPK signaling pathways in PC12 and striatal cells: ERK1/2 protects against mutant huntingtin-associated toxicity.; Hum Mol Genet, 15: 273-85 |
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GSE2602 |
| Apostolides, Michael et al. (2024) Accurate isoform quantification by joint short- and long-read RNA-sequencing.; bioRxiv, [no vol.]: [no pages] |
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GSE271528 |
| Apostolidis, Sokratis A et al. (2013) Protein phosphatase 2A enables expression of interleukin 17 (IL-17) through chromatin remodeling.; J Biol Chem, [no vol.]: [no pages] |
|
GSE49466 |
| Apostolopoulou, Maria et al. (2017) Non-monotonic Changes in Progenitor Cell Behavior and Gene Expression during Aging of the Adult V-SVZ Neural Stem Cell Niche.; Stem Cell Reports, 9: 1931-1947 |
|
GSE104651 |
| Appel, Elena et al. [Unknown date]An ensemble of regulatory elements controls Runx3 spatiotemporal expression in subsets of dorsal root ganglia proprioceptive neurons.; Genes Dev, 30: 2607-2622 |
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GSE81140 |
| Appleton, C T G et al. (2007) Global analyses of gene expression in early experimental osteoarthritis.; Arthritis Rheum, 56: 1854-68 |
|
GSE8077 |
| Appocher, Chiara et al. (2017) Major hnRNP proteins act as general TDP-43 functional modifiers both in Drosophila and human neuronal cells.; Nucleic Acids Res, 45: 8026-8045 |
|
GSE97262 |
| Aprea, Julieta et al. (2013) Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment.; EMBO J, 32: 3145-60 |
|
GSE51606 |
| April, Craig et al. (2009) Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.; PLoS One, 4: e8162 |
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GSE17564 GSE17575 GSE17573 GSE17572 GSE18767 GSE17565 GSE18769 GSE17558 |
| April-Monn, Simon L et al. (2024) Patient derived tumoroids of high grade neuroendocrine neoplasms for more personalized therapies.; NPJ Precis Oncol, 8: 59 |
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GSE213504 |
| Apulei, Jessica et al. [Unknown date]Non-cell Autonomous OTX2 Homeoprotein Regulates Visual Cortex Plasticity Through Gadd45b/g.; Cereb Cortex, 29: 2384-2395 |
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GSE98258 |
| Arac, Ahmet et al. (2014) Evidence that meningeal mast cells can worsen stroke pathology in mice.; Am J Pathol, 184: 2493-504 |
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GSE51566 |
| Arai, Yoko et al. (2005) Role of Fabp7, a downstream gene of Pax6, in the maintenance of neuroepithelial cells during early embryonic development of the rat cortex.; J Neurosci, 25: 9752-61 |
|
GSE2272 |
| Arai, Yoko et al. (2011) Neural stem and progenitor cells shorten S-phase on commitment to neuron production.; Nat Commun, 2: 154 |
|
GSE23585 |
| Araki, Hiromitsu et al. (2009) Analysis of PPARalpha-dependent and PPARalpha-independent transcript regulation following fenofibrate treatment of human endothelial cells.; Angiogenesis, 12: 221-9 |
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GSE15482 GSE15483 |
| Araki, Hirotaka et al. (2023) LSD1 defines the fiber type-selective responsiveness to environmental stress in skeletal muscle.; Elife, 12: [no pages] |
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GSE198826 |
| Araki, Kunihiko et al. (2019) TDP-43 regulates early-phase insulin secretion via CaV1.2-mediated exocytosis in islets.; J Clin Invest, 129: 3578-3593 |
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GSE125424 |
| Aramaki, Shinya et al. (2013) A mesodermal factor, T, specifies mouse germ cell fate by directly activating germline determinants.; Dev Cell, 27: 516-29 |
|
GSE49689 |
| Aramillo Irizar, Peer et al. (2018) Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly.; Nat Commun, 9: 327 |
|
GSE75192 |
| Aranda, Carlos J et al. (2019) Intestinal epithelial deletion of the glucocorticoid receptor NR3C1 alters expression of inflammatory mediators and barrier function.; FASEB J, 33: 14067-14082 |
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GSE126366 |
| Aranday Cortes, Elihu et al. (2010) Mycobacterium bovis-BCG vaccination induces specific pulmonary transcriptome biosignatures in mice.; PLoS One, 5: e11319 |
|
GSE21149 |
| Aranday-Cortes, Elihu et al. (2012) Transcriptional profiling of disease-induced host responses in bovine tuberculosis and the identification of potential diagnostic biomarkers.; PLoS One, 7: e30626 |
|
GSE33058 |
| Aranguren, Xabier L et al. (2013) Unraveling a novel transcription factor code determining the human arterial-specific endothelial cell signature.; Blood, 122: 3982-92 |
|
GSE43475 |
| Aras, Ebru et al. (2019) Light Entrains Diurnal Changes in Insulin Sensitivity of Skeletal Muscle via Ventromedial Hypothalamic Neurons.; Cell Rep, 27: 2385-2398.e3 |
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GSE129518 |
| Arashiro, Patricia et al. (2009) Transcriptional regulation differs in affected facioscapulohumeral muscular dystrophy patients compared to asymptomatic related carriers.; Proc Natl Acad Sci U S A, 106: 6220-5 |
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GSE15090 |
| Araujo, Daniel J et al. (2015) FoxP1 orchestration of ASD-relevant signaling pathways in the striatum.; Genes Dev, 29: 2081-96 |
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GSE62718.1 GSE62718.2 |
| Araujo, Daniel J et al. (2017) Foxp1 in Forebrain Pyramidal Neurons Controls Gene Expression Required for Spatial Learning and Synaptic Plasticity.; J Neurosci, 37: 10917-10931 |
|
GSE97181 |
| Aravindakshan, Jayaprakash et al. (2006) Differential expression of claudin family proteins in mouse ovarian serous papillary epithelial adenoma in aging FSH receptor-deficient mutants.; Neoplasia, 8: 984-94 |
|
GSE4323 |
| Arbaizar-Rovirosa, Maria et al. (2023) Aged lipid-laden microglia display impaired responses to stroke.; EMBO Mol Med, 15: e17175 |
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GSE196737 GSE209732 |
| Arbaizar-Rovirosa, Maria et al. (2023) Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke.; J Neuroinflammation, 20: 207 |
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GSE223744 GSE223714 |
| Arbeitman, Michelle N (2019) Maternal Experience Leads to Lasting Gene Expression Changes in Some Regions of the Mouse Brain.; G3 (Bethesda), 9: 2623-2628 |
|
GSE125428 |
| Arbogast, Thomas et al. (2015) Deletion of the App-Runx1 region in mice models human partial monosomy 21.; Dis Model Mech, 8: 623-34 |
|
GSE58639 |
| Arbogast, Thomas et al. (2016) Reciprocal Effects on Neurocognitive and Metabolic Phenotypes in Mouse Models of 16p11.2 Deletion and Duplication Syndromes.; PLoS Genet, 12: e1005709 |
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GSE66468 |
| Arboleda-Velasquez, Joseph F et al. (2008) Linking Notch signaling to ischemic stroke.; Proc Natl Acad Sci U S A, 105: 4856-61 |
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GSE58368 |