List of all 20,298 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Apelblat, Daniella et al. (2022) Meso-seq for in-depth transcriptomics in ultra-low amounts of FACS-purified neuronal nuclei.; Cell Rep Methods, 2: 100259 |
|
GSE185221 |
| Apfelbaum, April A et al. (2025) A diverse landscape of FGFR alterations and co-mutations suggests potential therapeutic strategies in pediatric low-grade gliomas.; Nat Commun, 16: 7018 |
|
GSE273989 |
| Apostol, Barbara L et al. (2006) Mutant huntingtin alters MAPK signaling pathways in PC12 and striatal cells: ERK1/2 protects against mutant huntingtin-associated toxicity.; Hum Mol Genet, 15: 273-85 |
|
GSE2602 |
| Apostolides, Michael et al. (2024) Accurate isoform quantification by joint short- and long-read RNA-sequencing.; bioRxiv, [no vol.]: [no pages] |
|
GSE271528 |
| Apostolidis, Sokratis A et al. (2013) Protein phosphatase 2A enables expression of interleukin 17 (IL-17) through chromatin remodeling.; J Biol Chem, [no vol.]: [no pages] |
|
GSE49466 |
| Apostolopoulou, Maria et al. (2017) Non-monotonic Changes in Progenitor Cell Behavior and Gene Expression during Aging of the Adult V-SVZ Neural Stem Cell Niche.; Stem Cell Reports, 9: 1931-1947 |
|
GSE104651 |
| Appel, Elena et al. (2016) An ensemble of regulatory elements controls Runx3 spatiotemporal expression in subsets of dorsal root ganglia proprioceptive neurons.; Genes Dev, 30: 2607-2622 |
|
GSE81140 |
| Appel, Haley et al. (2025) Ptbp1 is not required for retinal neurogenesis and cell fate specification.; bioRxiv, [no vol.]: [no pages] |
|
GSE300588 |
| Appleton, C T G et al. (2007) Global analyses of gene expression in early experimental osteoarthritis.; Arthritis Rheum, 56: 1854-68 |
|
GSE8077 |
| Appleton, Evan et al. (2025) Machine-guided cell-fate engineering.; Cell Rep, 44: 115726 |
|
GSE214951 |
| Appocher, Chiara et al. (2017) Major hnRNP proteins act as general TDP-43 functional modifiers both in Drosophila and human neuronal cells.; Nucleic Acids Res, 45: 8026-8045 |
|
GSE97262 |
| Aprea, Julieta et al. (2013) Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment.; EMBO J, 32: 3145-60 |
|
GSE51606 |
| April, Craig et al. (2009) Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.; PLoS One, 4: e8162 |
|
GSE17565 GSE17575 GSE17572 GSE18767 GSE17558 GSE18769 GSE17573 GSE17564 |
| April-Monn, Simon L et al. (2024) Patient derived tumoroids of high grade neuroendocrine neoplasms for more personalized therapies.; NPJ Precis Oncol, 8: 59 |
|
GSE213504 |
| Apulei, Jessica et al. (2019) Non-cell Autonomous OTX2 Homeoprotein Regulates Visual Cortex Plasticity Through Gadd45b/g.; Cereb Cortex, 29: 2384-2395 |
|
GSE98258 |
| Arabzade, A et al. (2025) Synthetic ZFTA fusions pinpoint disordered protein domain acquisition as a mechanism of brain tumorigenesis.; Nat Cell Biol, 27: 1496-1509 |
|
GSE266375 |
| Arac, Ahmet et al. (2014) Evidence that meningeal mast cells can worsen stroke pathology in mice.; Am J Pathol, 184: 2493-504 |
|
GSE51566 |
| Arai, Yoko et al. (2005) Role of Fabp7, a downstream gene of Pax6, in the maintenance of neuroepithelial cells during early embryonic development of the rat cortex.; J Neurosci, 25: 9752-61 |
|
GSE2272 |
| Arai, Yoko et al. (2011) Neural stem and progenitor cells shorten S-phase on commitment to neuron production.; Nat Commun, 2: 154 |
|
GSE23585 |
| Araki, Hiromitsu et al. (2009) Analysis of PPARalpha-dependent and PPARalpha-independent transcript regulation following fenofibrate treatment of human endothelial cells.; Angiogenesis, 12: 221-9 |
|
GSE15483 GSE15482 |
| Araki, Hirotaka et al. (2023) LSD1 defines the fiber type-selective responsiveness to environmental stress in skeletal muscle.; Elife, 12: [no pages] |
|
GSE198826 |
| Araki, Kunihiko et al. (2019) TDP-43 regulates early-phase insulin secretion via CaV1.2-mediated exocytosis in islets.; J Clin Invest, 129: 3578-3593 |
|
GSE125424 |
| Aramaki, Shinya et al. (2013) A mesodermal factor, T, specifies mouse germ cell fate by directly activating germline determinants.; Dev Cell, 27: 516-29 |
|
GSE49689 |
| Aramillo Irizar, Peer et al. (2018) Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly.; Nat Commun, 9: 327 |
|
GSE75192 |
| Aranda, Carlos J et al. (2019) Intestinal epithelial deletion of the glucocorticoid receptor NR3C1 alters expression of inflammatory mediators and barrier function.; FASEB J, 33: 14067-14082 |
|
GSE126366 |
| Aranday Cortes, Elihu et al. (2010) Mycobacterium bovis-BCG vaccination induces specific pulmonary transcriptome biosignatures in mice.; PLoS One, 5: e11319 |
|
GSE21149 |
| Aranday-Cortes, Elihu et al. (2012) Transcriptional profiling of disease-induced host responses in bovine tuberculosis and the identification of potential diagnostic biomarkers.; PLoS One, 7: e30626 |
|
GSE33058 |
| Aranguren, Xabier L et al. (2013) Unraveling a novel transcription factor code determining the human arterial-specific endothelial cell signature.; Blood, 122: 3982-92 |
|
GSE43475 |
| Aras, Ebru et al. (2019) Light Entrains Diurnal Changes in Insulin Sensitivity of Skeletal Muscle via Ventromedial Hypothalamic Neurons.; Cell Rep, 27: 2385-2398.e3 |
|
GSE129518 |
| Arashiro, Patricia et al. (2009) Transcriptional regulation differs in affected facioscapulohumeral muscular dystrophy patients compared to asymptomatic related carriers.; Proc Natl Acad Sci U S A, 106: 6220-5 |
|
GSE15090 |
| Araujo, Daniel J et al. (2015) FoxP1 orchestration of ASD-relevant signaling pathways in the striatum.; Genes Dev, 29: 2081-96 |
|
GSE62718.2 GSE62718.1 |
| Araujo, Daniel J et al. (2017) Foxp1 in Forebrain Pyramidal Neurons Controls Gene Expression Required for Spatial Learning and Synaptic Plasticity.; J Neurosci, 37: 10917-10931 |
|
GSE97181 |
| Aravindakshan, Jayaprakash et al. (2006) Differential expression of claudin family proteins in mouse ovarian serous papillary epithelial adenoma in aging FSH receptor-deficient mutants.; Neoplasia, 8: 984-94 |
|
GSE4323 |
| Araya, Paula et al. (2025) Interferon signaling modulates Down syndrome-associated Alzheimer's disease pathology in a mouse model.; iScience, 28: 113130 |
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GSE272694 GSE272691 GSE272662 GSE272693 GSE272690 GSE272663 |
| Arbaizar-Rovirosa, Maria et al. (2023) Aged lipid-laden microglia display impaired responses to stroke.; EMBO Mol Med, 15: e17175 |
|
GSE196737 GSE209732 |
| Arbaizar-Rovirosa, Maria et al. (2023) Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke.; J Neuroinflammation, 20: 207 |
|
GSE223744 GSE223714 |
| Arbeitman, Michelle N (2019) Maternal Experience Leads to Lasting Gene Expression Changes in Some Regions of the Mouse Brain.; G3 (Bethesda), 9: 2623-2628 |
|
GSE125428 |
| Arbogast, Thomas et al. (2015) Deletion of the App-Runx1 region in mice models human partial monosomy 21.; Dis Model Mech, 8: 623-34 |
|
GSE58639 |
| Arbogast, Thomas et al. (2016) Reciprocal Effects on Neurocognitive and Metabolic Phenotypes in Mouse Models of 16p11.2 Deletion and Duplication Syndromes.; PLoS Genet, 12: e1005709 |
|
GSE66468 |
| Arboleda-Velasquez, Joseph F et al. (2008) Linking Notch signaling to ischemic stroke.; Proc Natl Acad Sci U S A, 105: 4856-61 |
|
GSE58368 |
| Arce, Maximiliano et al. (2025) KRIT1 heterozygous mutations are sufficient to induce a pathological phenotype in patient-derived iPSC models of cerebral cavernous malformation.; Cell Rep, 44: 115576 |
|
GSE291768 |
| Archer, Kellie J et al. (2009) Identifying genes for establishing a multigenic test for hepatocellular carcinoma surveillance in hepatitis C virus-positive cirrhotic patients.; Cancer Epidemiol Biomarkers Prev, 18: 2929-32 |
|
GSE17967 |
| Arcos-Encarnación, Bolivar et al. (2025) KChIP3 fosters neuroinflammation and synaptic dysfunction in the 5XFAD mouse model of Alzheimer's disease.; J Neuroinflammation, 22: 160 |
|
GSE275435 |
| Ardura-Fabregat, Alberto et al. (2025) Response of spatially defined microglia states with distinct chromatin accessibility in a mouse model of Alzheimer's disease.; Nat Neurosci, [no vol.]: [no pages] |
|
GSE296027 |
| Arecco, Niccolò et al. (2024) Alternative splicing decouples local from global PRC2 activity.; Mol Cell, 84: 1049-1061.e8 |
|
GSE223666 |
| Arenzana, Teresita L et al. (2015) Regulation of gene expression dynamics during developmental transitions by the Ikaros transcription factor.; Genes Dev, 29: 1801-16 |
|
GSE67572 |
| Argiropoulos, Bob et al. (2008) Linkage of Meis1 leukemogenic activity to multiple downstream effectors including Trib2 and Ccl3.; Exp Hematol, 36: 845-59 |
|
GSE15541 |
| Argmann, Carmen A et al. (2017) Germline deletion of Krüppel-like factor 14 does not increase risk of diet induced metabolic syndrome in male C57BL/6 mice.; Biochim Biophys Acta Mol Basis Dis, 1863: 3277-3285 |
|
GSE172090 |
| Arguello, Tania et al. (2021) ATAD3A has a scaffolding role regulating mitochondria inner membrane structure and protein assembly.; Cell Rep, 37: 110139 |
|
GSE186409 |
| Arias-Fuenzalida, Jonathan et al. (2017) FACS-Assisted CRISPR-Cas9 Genome Editing Facilitates Parkinson's Disease Modeling.; Stem Cell Reports, 9: 1423-1431 |
|
GSE101534 |
| Arias-Loza, Paula-Anahi et al. (2012) The estrogen receptor-? is required and sufficient to maintain physiological glucose uptake in the mouse heart.; Hypertension, 60: 1070-7 |
|
GSE34807 |
| Ariazi, Eric A et al. (2011) Estrogen induces apoptosis in estrogen deprivation-resistant breast cancer through stress responses as identified by global gene expression across time.; Proc Natl Acad Sci U S A, 108: 18879-86 |
|
GSE29917 |
| Aries, Anne et al. (2023) Deciphering the Cardiovascular Potential of Human CD34+Stem Cells.; Int J Mol Sci, 24: [no pages] |
|
GSE221650 |
| Arifuzzaman, Sarder et al. (2017) Selective inhibition of EZH2 by a small molecule inhibitor regulates microglial gene expression essential for inflammation.; Biochem Pharmacol, 137: 61-80 |
|
GSE94144 |
| Arigoni, Maddalena et al. (2013) miR-135b coordinates progression of ErbB2-driven mammary carcinomas through suppression of MID1 and MTCH2.; Am J Pathol, 182: 2058-70 |
|
GSE28949 |
| Arijs, I et al. (2009) Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis.; Gut, 58: 1612-9 |
|
GSE14580 GSE12251 |
| Arijs, Ingrid et al. (2009) Mucosal gene expression of antimicrobial peptides in inflammatory bowel disease before and after first infliximab treatment.; PLoS One, 4: e7984 |
|
GSE16879 |
| Arimilli, Subhashini et al. (2019) Global gene expression profiles from PBMCs treated with reference tobacco product preparations.; Data Brief, 25: 103970 |
|
GSE110027 |
| Arion, D et al. (2015) Distinctive transcriptome alterations of prefrontal pyramidal neurons in schizophrenia and schizoaffective disorder.; Mol Psychiatry, 20: 1397-405 |
|
GSE93987 |
| Arion, Dominique et al. (2017) Transcriptome Alterations in Prefrontal Pyramidal Cells Distinguish Schizophrenia From Bipolar and Major Depressive Disorders.; Biol Psychiatry, [no vol.]: [no pages] |
|
GSE93577 GSE87610 |
| Arjoune, Asma et al. (2022) The genomic response of human granulosa cells (KGN) to melatonin and specific agonists/antagonists to the melatonin receptors.; Sci Rep, 12: 17539 |
|
GSE201943 |
| Arkhypov, Ihor et al. (2022) HSP90α induces immunosuppressive myeloid cells in melanoma via TLR4 signaling.; J Immunother Cancer, 10: [no pages] |
|
GSE207075 |
| Arlehamn, Cecilia Lindestam et al. (2014) Transcriptional profile of tuberculosis antigen-specific T cells reveals novel multifunctional features.; J Immunol, 193: 2931-40 |
|
GSE56179 |
| Arlotta, Paola et al. (2005) Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo.; Neuron, 45: 207-21 |
|
GSE2039 |
| Arlotta, Paola et al. (2008) Ctip2 controls the differentiation of medium spiny neurons and the establishment of the cellular architecture of the striatum.; J Neurosci, 28: 622-32 |
|
GSE9330 |
| Arlt, Volker M et al. (2011) Gene expression changes induced by the human carcinogen aristolochic acid I in renal and hepatic tissue of mice.; Int J Cancer, 128: 21-32 |
|
GSE18246 |
| Armbrecht, Harvey J et al. (2014) SAMP8 mice have altered hippocampal gene expression in long term potentiation, phosphatidylinositol signaling, and endocytosis pathways.; Neurobiol Aging, [no vol.]: [no pages] |
|
GSE49699 |
| Armenteros-Monterroso, Elena et al. (2019) The AAA+ATPase RUVBL2 is essential for the oncogenic function of c-MYB in acute myeloid leukemia.; Leukemia, 33: 2817-2829 |
|
GSE105253 GSE117106 |
| Armoskus, Chris et al. (2014) Identification of sexually dimorphic genes in the neonatal mouse cortex and hippocampus.; Brain Res, 1562: 23-38 |
|
GSE54283 |
| Armstrong, Matthew J et al. (2023) Role of TET1-mediated epigenetic modulation in Alzheimer's disease.; Neurobiol Dis, 185: 106257 |
|
GSE226053 |
| Armstrong, Scott A et al. (2002) MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia.; Nat Genet, 30: 41-7 |
|
armstrong-mll |
| Armugam, Arunmozhiarasi et al. (2009) A secretory phospholipase A2-mediated neuroprotection and anti-apoptosis.; BMC Neurosci, 10: 120 |
|
GSE17929.1 GSE17929.2 |
| Armulik, Annika et al. (2010) Pericytes regulate the blood-brain barrier.; Nature, 468: 557-61 |
|
GSE15892 |
| Arnal-Estapé, Anna et al. (2020) Tumor progression and chromatin landscape of lung cancer are regulated by the lineage factor GATA6.; Oncogene, 39: 3726-3737 |
|
GSE124603 |
| Arner, Emily N et al. (2024) AXL-TBK1 driven AKT3 activation promotes metastasis.; Sci Signal, 17: eado6057 |
|
GSE274874 |
| Arner, Erik et al. (2012) Adipose tissue microRNAs as regulators of CCL2 production in human obesity.; Diabetes, 61: 1986-93 |
|
GSE25401 |
| Arniani, Silvia et al. (2022) Chromothripsis is a frequent event and underlies typical genetic changes in early T-cell precursor lymphoblastic leukemia in adults.; Leukemia, 36: 2577-2585 |
|
GSE205265 |
| Arnold, Amanda R et al. (2022) Dietary emulsifier consumption alters gene expression in the amygdala and paraventricular nucleus of the hypothalamus in mice.; Sci Rep, 12: 9146 |
|
GSE194260 |
| Arnold, Ludovic et al. (2015) CX3CR1 deficiency promotes muscle repair and regeneration by enhancing macrophage ApoE production.; Nat Commun, 6: 8972 |
|
GSE73473 |
| Arnold, Phil et al. (2013) Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting.; Genome Res, 23: 60-73 |
|
GSE27114.2 |