List of all 16,683 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Archer, Kellie J et al. (2009) Identifying genes for establishing a multigenic test for hepatocellular carcinoma surveillance in hepatitis C virus-positive cirrhotic patients.; Cancer Epidemiol Biomarkers Prev, 18: 2929-32 |
|
GSE17967 |
| Arecco, Niccolò et al. (2024) Alternative splicing decouples local from global PRC2 activity.; Mol Cell, 84: 1049-1061.e8 |
|
GSE223666 |
| Arenzana, Teresita L et al. (2015) Regulation of gene expression dynamics during developmental transitions by the Ikaros transcription factor.; Genes Dev, 29: 1801-16 |
|
GSE67572 |
| Argiropoulos, Bob et al. (2008) Linkage of Meis1 leukemogenic activity to multiple downstream effectors including Trib2 and Ccl3.; Exp Hematol, 36: 845-59 |
|
GSE15541 |
| Argmann, Carmen A et al. (2017) Germline deletion of Krüppel-like factor 14 does not increase risk of diet induced metabolic syndrome in male C57BL/6 mice.; Biochim Biophys Acta Mol Basis Dis, 1863: 3277-3285 |
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GSE172090 |
| Arguello, Tania et al. (2021) ATAD3A has a scaffolding role regulating mitochondria inner membrane structure and protein assembly.; Cell Rep, 37: 110139 |
|
GSE186409 |
| Arias-Fuenzalida, Jonathan et al. (2017) FACS-Assisted CRISPR-Cas9 Genome Editing Facilitates Parkinson's Disease Modeling.; Stem Cell Reports, 9: 1423-1431 |
|
GSE101534 |
| Arias-Loza, Paula-Anahi et al. (2012) The estrogen receptor-? is required and sufficient to maintain physiological glucose uptake in the mouse heart.; Hypertension, 60: 1070-7 |
|
GSE34807 |
| Ariazi, Eric A et al. (2011) Estrogen induces apoptosis in estrogen deprivation-resistant breast cancer through stress responses as identified by global gene expression across time.; Proc Natl Acad Sci U S A, 108: 18879-86 |
|
GSE29917 |
| Aries, Anne et al. (2023) Deciphering the Cardiovascular Potential of Human CD34+Stem Cells.; Int J Mol Sci, 24: [no pages] |
|
GSE221650 |
| Arifuzzaman, Sarder et al. [Unknown date]Selective inhibition of EZH2 by a small molecule inhibitor regulates microglial gene expression essential for inflammation.; Biochem Pharmacol, 137: 61-80 |
|
GSE94144 |
| Arigoni, Maddalena et al. (2013) miR-135b coordinates progression of ErbB2-driven mammary carcinomas through suppression of MID1 and MTCH2.; Am J Pathol, 182: 2058-70 |
|
GSE28949 |
| Arijs, I et al. (2009) Mucosal gene signatures to predict response to infliximab in patients with ulcerative colitis.; Gut, 58: 1612-9 |
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GSE14580 GSE12251 |
| Arijs, Ingrid et al. (2009) Mucosal gene expression of antimicrobial peptides in inflammatory bowel disease before and after first infliximab treatment.; PLoS One, 4: e7984 |
|
GSE16879 |
| Arimilli, Subhashini et al. (2019) Global gene expression profiles from PBMCs treated with reference tobacco product preparations.; Data Brief, 25: 103970 |
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GSE110027 |
| Arion, D et al. (2015) Distinctive transcriptome alterations of prefrontal pyramidal neurons in schizophrenia and schizoaffective disorder.; Mol Psychiatry, 20: 1397-405 |
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GSE93987 |
| Arion, Dominique et al. (2017) Transcriptome Alterations in Prefrontal Pyramidal Cells Distinguish Schizophrenia From Bipolar and Major Depressive Disorders.; Biol Psychiatry, [no vol.]: [no pages] |
|
GSE93577 GSE87610 |
| Arjoune, Asma et al. (2022) The genomic response of human granulosa cells (KGN) to melatonin and specific agonists/antagonists to the melatonin receptors.; Sci Rep, 12: 17539 |
|
GSE201943 |
| Arkhypov, Ihor et al. (2022) HSP90α induces immunosuppressive myeloid cells in melanoma via TLR4 signaling.; J Immunother Cancer, 10: [no pages] |
|
GSE207075 |
| Arlehamn, Cecilia Lindestam et al. (2014) Transcriptional profile of tuberculosis antigen-specific T cells reveals novel multifunctional features.; J Immunol, 193: 2931-40 |
|
GSE56179 |
| Arlotta, Paola et al. (2005) Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo.; Neuron, 45: 207-21 |
|
GSE2039 |
| Arlotta, Paola et al. (2008) Ctip2 controls the differentiation of medium spiny neurons and the establishment of the cellular architecture of the striatum.; J Neurosci, 28: 622-32 |
|
GSE9330 |
| Arlt, Volker M et al. (2011) Gene expression changes induced by the human carcinogen aristolochic acid I in renal and hepatic tissue of mice.; Int J Cancer, 128: 21-32 |
|
GSE18246 |
| Armbrecht, Harvey J et al. (2014) SAMP8 mice have altered hippocampal gene expression in long term potentiation, phosphatidylinositol signaling, and endocytosis pathways.; Neurobiol Aging, [no vol.]: [no pages] |
|
GSE49699 |
| Armenteros-Monterroso, Elena et al. (2019) The AAA+ATPase RUVBL2 is essential for the oncogenic function of c-MYB in acute myeloid leukemia.; Leukemia, 33: 2817-2829 |
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GSE105253 GSE117106 |
| Armoskus, Chris et al. (2014) Identification of sexually dimorphic genes in the neonatal mouse cortex and hippocampus.; Brain Res, 1562: 23-38 |
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GSE54283 |
| Armstrong, Matthew J et al. (2023) Role of TET1-mediated epigenetic modulation in Alzheimer's disease.; Neurobiol Dis, 185: 106257 |
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GSE226053 |
| Armstrong, Scott A et al. (2002) MLL translocations specify a distinct gene expression profile that distinguishes a unique leukemia.; Nat Genet, 30: 41-7 |
|
armstrong-mll |
| Armugam, Arunmozhiarasi et al. (2009) A secretory phospholipase A2-mediated neuroprotection and anti-apoptosis.; BMC Neurosci, 10: 120 |
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GSE17929.2 GSE17929.1 |
| Armulik, Annika et al. (2010) Pericytes regulate the blood-brain barrier.; Nature, 468: 557-61 |
|
GSE15892 |
| Arner, Emily N et al. (2024) AXL-TBK1 driven AKT3 activation promotes metastasis.; Sci Signal, 17: eado6057 |
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GSE274874 |
| Arner, Erik et al. (2012) Adipose tissue microRNAs as regulators of CCL2 production in human obesity.; Diabetes, 61: 1986-93 |
|
GSE25401 |
| Arniani, Silvia et al. (2022) Chromothripsis is a frequent event and underlies typical genetic changes in early T-cell precursor lymphoblastic leukemia in adults.; Leukemia, 36: 2577-2585 |
|
GSE205265 |
| Arnold, Amanda R et al. (2022) Dietary emulsifier consumption alters gene expression in the amygdala and paraventricular nucleus of the hypothalamus in mice.; Sci Rep, 12: 9146 |
|
GSE194260 |
| Arnold, Ludovic et al. (2015) CX3CR1 deficiency promotes muscle repair and regeneration by enhancing macrophage ApoE production.; Nat Commun, 6: 8972 |
|
GSE73473 |
| Arnold, Phil et al. (2013) Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting.; Genome Res, 23: 60-73 |
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GSE27114.2 GSE27114.1 |
| Arnold, Thomas D et al. (2019) Impaired ?V?8 and TGF? signaling lead to microglial dysmaturation and neuromotor dysfunction.; J Exp Med, 216: 900-915 |
|
GSE124868 |
| Arnone, Djésia et al. (2021) Long-Term Overconsumption of Fat and Sugar Causes a Partially Reversible Pre-inflammatory Bowel Disease State.; Front Nutr, 8: 758518 |
|
GSE151400 |
| Arora, Sonny et al. (2023) Joint sequence & chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin.; bioRxiv, [no vol.]: [no pages] |
|
GSE244408 |
| Arranz, Juan et al. [Unknown date]Impaired development of neocortical circuits contributes to the neurological alterations in DYRK1A haploinsufficiency syndrome.; Neurobiol Dis, 127: 210-222 |
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GSE127707 |
| Arranz, Lorena et al. (2012) Bmi1 is critical to prevent Ikaros-mediated lymphoid priming in hematopoietic stem cells.; Cell Cycle, 11: 65-78 |
|
GSE31404 |
| Arredondo, Cristian et al. (2022) Excessive release of inorganic polyphosphate by ALS/FTD astrocytes causes non-cell-autonomous toxicity to motoneurons.; Neuron, 110: 1656-1670.e12 |
|
GSE196664 |
| Arredouani, Mohamed S et al. (2009) Identification of the transcription factor single-minded homologue 2 as a potential biomarker and immunotherapy target in prostate cancer.; Clin Cancer Res, 15: 5794-802 |
|
GSE55945 |
| Arreola, Alexandra et al. (2018) Von Hippel-Lindau mutations disrupt vascular patterning and maturation via Notch.; JCI Insight, 3: [no pages] |
|
GSE109102 |
| Arribas, Víctor et al. (2024) Endothelial TDP-43 controls sprouting angiogenesis and vascular barrier integrity, and its deletion triggers neuroinflammation.; JCI Insight, 9: [no pages] |
|
GSE253868 |
| Artinger, Erika L et al. (2013) An MLL-dependent network sustains hematopoiesis.; Proc Natl Acad Sci U S A, 110: 12000-5 |
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GSE47205 |
| Arumugam, Thiruma V et al. (2017) An atypical role for the myeloid receptor Mincle in central nervous system injury.; J Cereb Blood Flow Metab, 37: 2098-2111 |
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GSE77986 |
| Arumugam, Thiruvengadam et al. (2009) Epithelial to mesenchymal transition contributes to drug resistance in pancreatic cancer.; Cancer Res, 69: 5820-8 |
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GSE15550 |
| Arun, Gayatri et al. (2016) Differentiation of mammary tumors and reduction in metastasis upon Malat1 lncRNA loss.; Genes Dev, 30: 34-51 |
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GSE67647 |
| Arunachalam, Prabhu S et al. (2021) Systems vaccinology of the BNT162b2 mRNA vaccine in humans.; Nature, 596: 410-416 |
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GSE169159 |
| Arutyunov, Artem et al. (2024) West Nile Virus-Induced Expression of Senescent GeneLgals3bpRegulates Microglial Phenotype within Cerebral Cortex.; Biomolecules, 14: [no pages] |
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GSE270687 |
| Arya, Michelle A et al. (2013) Notch pathway activation contributes to inhibition of C2C12 myoblast differentiation by ethanol.; PLoS One, 8: e71632 |
|
GSE46492 |
| Aryal, Sameer et al. (2021) Genetic removal of p70 S6K1 corrects coding sequence length-dependent alterations in mRNA translation in fragile X syndrome mice.; Proc Natl Acad Sci U S A, 118: [no pages] |
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GSE143659 |
| Aryee, D N T et al. (2013) Variability in functional p53 reactivation by PRIMA-1(Met)/APR-246 in Ewing sarcoma.; Br J Cancer, [no vol.]: [no pages] |
|
GSE49967 |
| Asaduzzaman, Muhammad et al. (2017) Tumour suppressor EP300, a modulator of paclitaxel resistance and stemness, is downregulated in metaplastic breast cancer.; Breast Cancer Res Treat, 163: 461-474 |
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GSE76200 |
| Asahina, Kinji et al. (2020) Moderate alcohol intake promotes pancreatic ductal adenocarcinoma development in mice expressing oncogenic Kras.; Am J Physiol Gastrointest Liver Physiol, 318: G265-G276 |
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GSE139357 |
| Asakawa, Yuta et al. (2020) Epstein-Barr virus-positive gastric cancer involves enhancer activation through activating transcription factor 3.; Cancer Sci, 111: 1818-1828 |
|
GSE141385 |
| Asangani, Irfan A et al. (2014) Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer.; Nature, 510: 278-82 |
|
GSE55063 |
| Asantewaa, Gloria et al. (2024) Glutathione synthesis in the mouse liver supports lipid abundance through NRF2 repression.; Nat Commun, 15: 6152 |
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GSE263190 GSE263119 |
| Aschauer, Constantin et al. (2017) Positioning of Tacrolimus for the Treatment of Diabetic Nephropathy Based on Computational Network Analysis.; PLoS One, 12: e0169518 |
|
GSE84908 |
| Asgarian, Zeinab et al. (2022) MTG8 interacts with LHX6 to specify cortical interneuron subtype identity.; Nat Commun, 13: 5217 |
|
GSE207506 |
| Asgharzadeh, Shahab et al. (2006) Prognostic significance of gene expression profiles of metastatic neuroblastomas lacking MYCN gene amplification.; J Natl Cancer Inst, 98: 1193-203 |
|
GSE3446 |
| Ashida, Shingo et al. (2012) Integrated analysis reveals critical genomic regions in prostate tumor microenvironment associated with clinicopathologic phenotypes.; Clin Cancer Res, 18: 1578-87 |
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GSE34312 |
| Ashokan, Akash et al. (2024) Simultaneous targeting of peripheral and brain tumors with a therapeutic nanoparticle to disrupt metabolic adaptability at both sites.; Proc Natl Acad Sci U S A, 121: e2318119121 |
|
GSE264575 |
| Ashraf, Sadia et al. (2019) Nuclear receptor subfamily 4 group A member 2 inhibits activation of ERK signaling and cell growth in response to β-adrenergic stimulation in adult rat cardiomyocytes.; Am J Physiol Cell Physiol, 317: C513-C524 |
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GSE122911 |
| Ashton, John M et al. (2012) Gene sets identified with oncogene cooperativity analysis regulate in vivo growth and survival of leukemia stem cells.; Cell Stem Cell, 11: 359-72 |
|
GSE37907 |
| Ashton, Kevin J et al. (2013) Unique transcriptional profile of sustained ligand-activated preconditioning in pre- and post-ischemic myocardium.; PLoS One, 8: e72278 |
|
GSE39407 |
| Asiedu, Michael K et al. (2018) Patient- and Cell Type-Specific Heterogeneity of Metformin Response.; Basic Clin Pharmacol Toxicol, 122: 214-222 |
|
GSE95298 |
| Askar, Parizat et al. (2022) The Etv1/Er81 transcription factor coordinates myelination-related genes to regulate Schwann cell differentiation and myelination.; Ann Transl Med, 10: 875 |
|
GSE163132 |
| Askenase, Michael H et al. (2021) Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage.; Sci Immunol, 6: [no pages] |
|
GSE163256 |
| Askovich, Peter S et al. (2013) Differential host response, rather than early viral replication efficiency, correlates with pathogenicity caused by influenza viruses.; PLoS One, 8: e74863 |
|
GSE42285 |
| Asrani, Kaushal et al. (2021) Reciprocal YAP1 loss and INSM1 expression in neuroendocrine prostate cancer.; J Pathol, 255: 425-437 |
|
GSE182407 |
| Asrican, Brent et al. (2020) Neuropeptides Modulate Local Astrocytes to Regulate Adult Hippocampal Neural Stem Cells.; Neuron, 108: 349-366.e6 |
|
GSE137052 |
| Assassi, Shervin et al. (2013) Skin gene expression correlates of severity of interstitial lung disease in systemic sclerosis.; Arthritis Rheum, 65: 2917-27 |
|
GSE47162 |
| Assassi, Shervin et al. (2019) Myeloablation followed by autologous stem cell transplantation normalises systemic sclerosis molecular signatures.; Ann Rheum Dis, 78: 1371-1378 |
|
GSE130953 |
| Assassi, Shervin et al. (2022) Peripheral blood gene expression profiling shows predictive significance for response to mycophenolate in systemic sclerosis-related interstitial lung disease.; Ann Rheum Dis, 81: 854-860 |
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GSE181228 |
| Asselin-Labat, Marie-Liesse et al. (2010) Control of mammary stem cell function by steroid hormone signalling.; Nature, 465: 798-802 |
|
GSE20402 GSE20401 |
| Assi, Salam A et al. [Unknown date]Subtype-specific regulatory network rewiring in acute myeloid leukemia.; Nat Genet, 51: 151-162 |
|
GSE108266 |
| Assis-Mendonça, Guilherme Rossi et al. (2023) Transcriptome analyses of the cortex and white matter of focal cortical dysplasia type II: Insights into pathophysiology and tissue characterization.; Front Neurol, 14: 1023950 |
|
GSE213488 |
| Astapova, Inna et al. (2008) The nuclear corepressor, NCoR, regulates thyroid hormone action in vivo.; Proc Natl Acad Sci U S A, 105: 19544-9 |
|
GSE10001 |
| Astolfi, Annalisa et al. (2010) A molecular portrait of gastrointestinal stromal tumors: an integrative analysis of gene expression profiling and high-resolution genomic copy number.; Lab Invest, 90: 1285-94 |
|
GSE20708 |
| Atala, Anthony (2020) Re: Inhibition of a G9a/DNMT Network Triggers Immune-Mediated Bladder Cancer Regression.; J Urol, 203: 885 |
|
GSE115485 |
| Ataman, Bulent et al. [Unknown date]Evolution of Osteocrin as an activity-regulated factor in the primate brain.; Nature, 539: 242-247 |
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GSE78688.1 GSE78688.2 GSE78688.3 |
| Atarashi, Koji et al. [Unknown date]Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation.; Science, 358: 359-365 |
|
GSE101678 |
| Aterido, Adrià et al. (2014) Novel insights into the regulatory architecture of CD4+ T cells in rheumatoid arthritis.; PLoS One, 9: e100690 |
|
GSE55468 |
| Ates, Gamze et al. (2024) CMS121 Partially Attenuates Disease Progression in Mouse Models of Huntington's Disease.; Mol Neurobiol, 61: 2165-2175 |
|
GSE223847 |
| Athippozhy, Antony et al. (2011) Differential gene expression in liver and small intestine from lactating rats compared to age-matched virgin controls detects increased mRNA of cholesterol biosynthetic genes.; BMC Genomics, 12: 95 |
|
GSE19175 |
| Athota, Pranavi et al. (2023) Novel RNA-Seq Signatures Post-Methamphetamine and Oxycodone Use in a Model of HIV-Associated Neurocognitive Disorders.; Viruses, 15: [no pages] |
|
GSE236466 |
| Athwal, Harleen K et al. [Unknown date]Sox10 Regulates Plasticity of Epithelial Progenitors toward Secretory Units of Exocrine Glands.; Stem Cell Reports, 12: 366-380 |
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GSE123341 |
| Attilio, Peter J et al. (2021) Transcriptomic Analysis of Mouse Brain After Traumatic Brain Injury Reveals That the Angiotensin Receptor Blocker Candesartan Acts Through Novel Pathways.; Front Neurosci, 15: 636259 |
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GSE163415 |
| Attoff, Kristina et al. (2017) Whole genome microarray analysis of neural progenitor C17.2 cells during differentiation and validation of 30 neural mRNA biomarkers for estimation of developmental neurotoxicity.; PLoS One, 12: e0190066 |
|
GSE97337 |