List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Andrew, Angeline S et al. (2007) Exposure to arsenic at levels found inU.S. drinking water modifies expression in the mouse lung.; Toxicol Sci, 100: 75-87 |
|
GSE9630.1 |
| Andrew, Tom W et al. (2022) Sexually dimorphic estrogen sensing in skeletal stem cells controls skeletal regeneration.; Nat Commun, 13: 6491 |
|
GSE213574 |
| Androulidaki, Ariadne et al. (2025) Lack of caspase 8 directs neuronal progenitor-like reprogramming and small cell lung cancer progression.; Nat Commun, 16: 11280 |
|
GSE271260 |
| Androvic, Peter et al. (2020) Decoding the Transcriptional Response to Ischemic Stroke in Young and Aged Mouse Brain.; Cell Rep, 31: 107777 |
|
GSE137482 |
| Andzelm, Milena M et al. (2015) MEF2D drives photoreceptor development through a genome-wide competition for tissue-specific enhancers.; Neuron, 86: 247-63 |
|
GSE61389 |
| Ang, Cheen Euong et al. (2019) The novel lncRNAlnc-NR2F1is pro-neurogenic and mutated in human neurodevelopmental disorders.; Elife, 8: [no pages] |
|
GSE115077 |
| Ang, Yen-Sin et al. (2011) Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network.; Cell, 145: 183-97 |
|
GSE19588.1 GSE19588.2 |
| Anglesio, M S et al. (2013) Cancer-associated somatic DICER1 hotspot mutations cause defective miRNA processing and reverse-strand expression bias to predominantly mature 3p strands through loss of 5p strand cleavage.; J Pathol, 229: 400-9 |
|
GSE40965 |
| Anglesio, Michael S et al. (2008) Mutation of ERBB2 provides a novel alternative mechanism for the ubiquitous activation of RAS-MAPK in ovarian serous low malignant potential tumors.; Mol Cancer Res, 6: 1678-90 |
|
GSE12172 |
| Angus-Hill, Melinda L et al. (2011) T-cell factor 4 functions as a tumor suppressor whose disruption modulates colon cell proliferation and tumorigenesis.; Proc Natl Acad Sci U S A, 108: 4914-9 |
|
GSE27522 |
| Anichini, Andrea et al. (2022) Landscape of immune-related signatures induced by targeting of different epigenetic regulators in melanoma: implications for immunotherapy.; J Exp Clin Cancer Res, 41: 325 |
|
GSE189630 GSE189629 GSE189628 |
| Anido, Judit et al. (2010) TGF-? Receptor Inhibitors Target the CD44(high)/Id1(high) Glioma-Initiating Cell Population in Human Glioblastoma.; Cancer Cell, 18: 655-68 |
|
GSE23935 |
| Anier, Kaili et al. (2013) S-adenosylmethionine modifies cocaine-induced DNA methylation and increases locomotor sensitization in mice.; Int J Neuropsychopharmacol, [no vol.]: 1-14 |
|
GSE48365 |
| Anirudh, Subramanian et al. (2020) TNFα Rescues Dendritic Cell Development in Hematopoietic Stem and Progenitor Cells Lacking C/EBPα.; Cells, 9: [no pages] |
|
GSE146288 |
| Anirudhan, Jithu et al. (2025) Novel Insights into Emx2 and Dmrta2 Cooperation during Cortex Development and Evidence for Dmrta2 Function in the Choroid Plexus.; J Neurosci, 45: [no pages] |
|
GSE277662 |
| Annibali, Viviana et al. (2011) CD161(high)CD8+T cells bear pathogenetic potential in multiple sclerosis.; Brain, 134: 542-54 |
|
GSE16461 |
| Annibali, Viviana et al. (2018) Analysis of coding and non-coding transcriptome of peripheral B cells reveals an altered interferon response factor (IRF)-1 pathway in multiple sclerosis patients.; J Neuroimmunol, 324: 165-171 |
|
GSE117935 |
| Anthonydhason, Vimala et al. (2026) Erastin-induced ferroptosis enhances natural killer cell anti-tumor activity and offers therapeutic potential in neuroblastoma.; Front Immunol, 17: 1739503 |
|
GSE317656 |
| Anthérieu, Sébastien et al. (2014) Chronic exposure to low doses of pharmaceuticals disturbs the hepatic expression of circadian genes in lean and obese mice.; Toxicol Appl Pharmacol, 276: 63-72 |
|
GSE49195 |
| Antico Arciuch, Valeria G et al. (2011) Thyrocyte-specific inactivation of p53 and Pten results in anaplastic thyroid carcinomas faithfully recapitulating human tumors.; Oncotarget, 2: 1109-26 |
|
GSE30427 |
| Antipova, Alena A et al. (2008) Gene expression-based screening for inhibitors of PDGFR signaling.; Genome Biol, 9: R47 |
|
GSE7403 |
| Antolic, Andrew et al. (2020) BET bromodomain proteins regulate transcriptional reprogramming in genetic dilated cardiomyopathy.; JCI Insight, 5: [no pages] |
|
GSE152005 |
| Antonell, Anna et al. (2013) A preliminary study of the whole-genome expression profile of sporadic and monogenic early-onset Alzheimer's disease.; Neurobiol Aging, 34: 1772-8 |
|
GSE39420 |
| Antonio Urrutia, Gustavo et al. (2021) ZFP451-mediated SUMOylation of SATB2 drives embryonic stem cell differentiation.; Genes Dev, 35: 1142-1160 |
|
GSE119990 |
| Antoniou, Panagiotis et al. (2022) Base-editing-mediated dissection of a γ-globin cis-regulatory element for the therapeutic reactivation of fetal hemoglobin expression.; Nat Commun, 13: 6618 |
|
GSE191135 |
| Antunes, Cláudia et al. (2020) Tet3 ablation in adult brain neurons increases anxiety-like behavior and regulates cognitive function in mice.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE140850 |
| Anvar, Seyed Yahya et al. (2011) Deregulation of the ubiquitin-proteasome system is the predominant molecular pathology in OPMD animal models and patients.; Skelet Muscle, 1: 15 |
|
GSE26605 |
| Aníbal-Martínez, Mar et al. (2025) A prenatal window for enhancing spatial resolution of cortical barrel maps.; Nat Commun, 16: 1955 |
|
GSE260865 |
| Aoki, Hitomi et al. (2012) Genetic ablation of Rest leads to in vitro-specific derepression of neuronal genes during neurogenesis.; Development, 139: 667-77 |
|
GSE34625 |
| Aoki, Kazunari et al. (2024) Canonical BAF complex regulates the oncogenic program in human T-cell acute lymphoblastic leukemia.; Blood, 143: 604-618 |
|
GSE227274 |
| Aoshima, Kota et al. (2025) Establishment of human Leber's hereditary optic neuropathy model using iPSC-derived retinal organoids.; Front Cell Neurosci, 19: 1635775 |
|
GSE305550 |
| Aparicio, Jennifer G et al. (2024) Aberrant gene expression yet undiminished retinal ganglion cell genesis in iPSC-derived models of optic nerve hypoplasia.; Ophthalmic Genet, 45: 1-15 |
|
GSE227975 |
| Aparisi Rey, Alejandro et al. (2019) Gadd45? modulates aversive learning through post-transcriptional regulation of memory-related mRNAs.; EMBO Rep, 20: [no pages] |
|
GSE100923 |
| Apelblat, Daniella et al. (2022) Meso-seq for in-depth transcriptomics in ultra-low amounts of FACS-purified neuronal nuclei.; Cell Rep Methods, 2: 100259 |
|
GSE185221 |
| Apfelbaum, April A et al. (2025) A diverse landscape of FGFR alterations and co-mutations suggests potential therapeutic strategies in pediatric low-grade gliomas.; Nat Commun, 16: 7018 |
|
GSE273989 |
| Apostol, Barbara L et al. (2006) Mutant huntingtin alters MAPK signaling pathways in PC12 and striatal cells: ERK1/2 protects against mutant huntingtin-associated toxicity.; Hum Mol Genet, 15: 273-85 |
|
GSE2602 |
| Apostolides, Michael et al. (2024) Accurate isoform quantification by joint short- and long-read RNA-sequencing.; bioRxiv, [no vol.]: [no pages] |
|
GSE271528 |
| Apostolidis, Sokratis A et al. (2013) Protein phosphatase 2A enables expression of interleukin 17 (IL-17) through chromatin remodeling.; J Biol Chem, [no vol.]: [no pages] |
|
GSE49466 |
| Apostolopoulou, Maria et al. (2017) Non-monotonic Changes in Progenitor Cell Behavior and Gene Expression during Aging of the Adult V-SVZ Neural Stem Cell Niche.; Stem Cell Reports, 9: 1931-1947 |
|
GSE104651 |
| Appel, Elena et al. (2016) An ensemble of regulatory elements controls Runx3 spatiotemporal expression in subsets of dorsal root ganglia proprioceptive neurons.; Genes Dev, 30: 2607-2622 |
|
GSE81140 |
| Appel, Haley et al. (2025) Ptbp1 is not required for retinal neurogenesis and cell fate specification.; bioRxiv, [no vol.]: [no pages] |
|
GSE300588 |
| Appleton, C T G et al. (2007) Global analyses of gene expression in early experimental osteoarthritis.; Arthritis Rheum, 56: 1854-68 |
|
GSE8077 |
| Appleton, Evan et al. (2025) Machine-guided cell-fate engineering.; Cell Rep, 44: 115726 |
|
GSE214951 |
| Appocher, Chiara et al. (2017) Major hnRNP proteins act as general TDP-43 functional modifiers both in Drosophila and human neuronal cells.; Nucleic Acids Res, 45: 8026-8045 |
|
GSE97262 |
| Aprea, Julieta et al. (2013) Transcriptome sequencing during mouse brain development identifies long non-coding RNAs functionally involved in neurogenic commitment.; EMBO J, 32: 3145-60 |
|
GSE51606 |
| Aprea, Julieta et al. (2014) Identification and expression patterns of novel long non-coding RNAs in neural progenitors of the developing mammalian cortex.; Neurogenesis (Austin), 2: e995524 |
|
GSE65487 |
| April, Craig et al. (2009) Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.; PLoS One, 4: e8162 |
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GSE17565 GSE17575 GSE17572 GSE18767 GSE17558 GSE18769 GSE17573 GSE17564 |
| April-Monn, Simon L et al. (2024) Patient derived tumoroids of high grade neuroendocrine neoplasms for more personalized therapies.; NPJ Precis Oncol, 8: 59 |
|
GSE213504 |
| Apsley, Elizabeth J et al. (2025) Cerebellar organoids model cell type-specific FOXP2 expression during human cerebellar development.; Dis Model Mech, 18: [no pages] |
|
GSE285003 |
| Apulei, Jessica et al. (2019) Non-cell Autonomous OTX2 Homeoprotein Regulates Visual Cortex Plasticity Through Gadd45b/g.; Cereb Cortex, 29: 2384-2395 |
|
GSE98258 |
| Arabzade, A et al. (2025) Synthetic ZFTA fusions pinpoint disordered protein domain acquisition as a mechanism of brain tumorigenesis.; Nat Cell Biol, 27: 1496-1509 |
|
GSE266375 |
| Arac, Ahmet et al. (2014) Evidence that meningeal mast cells can worsen stroke pathology in mice.; Am J Pathol, 184: 2493-504 |
|
GSE51566 |
| Arai, Yoko et al. (2005) Role of Fabp7, a downstream gene of Pax6, in the maintenance of neuroepithelial cells during early embryonic development of the rat cortex.; J Neurosci, 25: 9752-61 |
|
GSE2272 |
| Arai, Yoko et al. (2011) Neural stem and progenitor cells shorten S-phase on commitment to neuron production.; Nat Commun, 2: 154 |
|
GSE23585 |
| Araki, Hiromitsu et al. (2009) Analysis of PPARalpha-dependent and PPARalpha-independent transcript regulation following fenofibrate treatment of human endothelial cells.; Angiogenesis, 12: 221-9 |
|
GSE15483 GSE15482 |
| Araki, Hirotaka et al. (2023) LSD1 defines the fiber type-selective responsiveness to environmental stress in skeletal muscle.; Elife, 12: [no pages] |
|
GSE198826 |
| Araki, Kunihiko et al. (2019) TDP-43 regulates early-phase insulin secretion via CaV1.2-mediated exocytosis in islets.; J Clin Invest, 129: 3578-3593 |
|
GSE125424 |
| Aramaki, Shinya et al. (2013) A mesodermal factor, T, specifies mouse germ cell fate by directly activating germline determinants.; Dev Cell, 27: 516-29 |
|
GSE49689 |
| Aramillo Irizar, Peer et al. (2018) Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly.; Nat Commun, 9: 327 |
|
GSE75192 |
| Aranda, Carlos J et al. (2019) Intestinal epithelial deletion of the glucocorticoid receptor NR3C1 alters expression of inflammatory mediators and barrier function.; FASEB J, 33: 14067-14082 |
|
GSE126366 |
| Aranday Cortes, Elihu et al. (2010) Mycobacterium bovis-BCG vaccination induces specific pulmonary transcriptome biosignatures in mice.; PLoS One, 5: e11319 |
|
GSE21149 |
| Aranday-Cortes, Elihu et al. (2012) Transcriptional profiling of disease-induced host responses in bovine tuberculosis and the identification of potential diagnostic biomarkers.; PLoS One, 7: e30626 |
|
GSE33058 |
| Aranguren, Xabier L et al. (2013) Unraveling a novel transcription factor code determining the human arterial-specific endothelial cell signature.; Blood, 122: 3982-92 |
|
GSE43475 |
| Aras, Ebru et al. (2019) Light Entrains Diurnal Changes in Insulin Sensitivity of Skeletal Muscle via Ventromedial Hypothalamic Neurons.; Cell Rep, 27: 2385-2398.e3 |
|
GSE129518 |
| Arashiro, Patricia et al. (2009) Transcriptional regulation differs in affected facioscapulohumeral muscular dystrophy patients compared to asymptomatic related carriers.; Proc Natl Acad Sci U S A, 106: 6220-5 |
|
GSE15090 |
| Araujo, Daniel J et al. (2015) FoxP1 orchestration of ASD-relevant signaling pathways in the striatum.; Genes Dev, 29: 2081-96 |
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GSE62718.2 GSE62718.1 |
| Araujo, Daniel J et al. (2017) Foxp1 in Forebrain Pyramidal Neurons Controls Gene Expression Required for Spatial Learning and Synaptic Plasticity.; J Neurosci, 37: 10917-10931 |
|
GSE97181 |
| Aravindakshan, Jayaprakash et al. (2006) Differential expression of claudin family proteins in mouse ovarian serous papillary epithelial adenoma in aging FSH receptor-deficient mutants.; Neoplasia, 8: 984-94 |
|
GSE4323 |
| Araya, Paula et al. (2025) Interferon signaling modulates Down syndrome-associated Alzheimer's disease pathology in a mouse model.; iScience, 28: 113130 |
|
GSE272694 GSE272691 GSE272662 GSE272693 GSE272690 GSE272663 |
| Arbaizar-Rovirosa, Maria et al. (2023) Aged lipid-laden microglia display impaired responses to stroke.; EMBO Mol Med, 15: e17175 |
|
GSE196737 GSE209732 |
| Arbaizar-Rovirosa, Maria et al. (2023) Transcriptomics and translatomics identify a robust inflammatory gene signature in brain endothelial cells after ischemic stroke.; J Neuroinflammation, 20: 207 |
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GSE223744 GSE223714 |
| Arbeitman, Michelle N (2019) Maternal Experience Leads to Lasting Gene Expression Changes in Some Regions of the Mouse Brain.; G3 (Bethesda), 9: 2623-2628 |
|
GSE125428 |
| Arbogast, Thomas et al. (2015) Deletion of the App-Runx1 region in mice models human partial monosomy 21.; Dis Model Mech, 8: 623-34 |
|
GSE58639 |
| Arbogast, Thomas et al. (2016) Reciprocal Effects on Neurocognitive and Metabolic Phenotypes in Mouse Models of 16p11.2 Deletion and Duplication Syndromes.; PLoS Genet, 12: e1005709 |
|
GSE66468 |
| Arboleda-Velasquez, Joseph F et al. (2014) Notch signaling functions in retinal pericyte survival.; Invest Ophthalmol Vis Sci, 55: 5191-9 |
|
GSE58368 |
| Arce, Maximiliano et al. (2025) KRIT1 heterozygous mutations are sufficient to induce a pathological phenotype in patient-derived iPSC models of cerebral cavernous malformation.; Cell Rep, 44: 115576 |
|
GSE291768 |
| Archer, Kellie J et al. (2009) Identifying genes for establishing a multigenic test for hepatocellular carcinoma surveillance in hepatitis C virus-positive cirrhotic patients.; Cancer Epidemiol Biomarkers Prev, 18: 2929-32 |
|
GSE17967 |
| Arcos-Encarnación, Bolivar et al. (2025) KChIP3 fosters neuroinflammation and synaptic dysfunction in the 5XFAD mouse model of Alzheimer's disease.; J Neuroinflammation, 22: 160 |
|
GSE275435 |
| Ardura-Fabregat, Alberto et al. (2025) Response of spatially defined microglia states with distinct chromatin accessibility in a mouse model of Alzheimer's disease.; Nat Neurosci, [no vol.]: [no pages] |
|
GSE296027 |
| Arecco, Niccolò et al. (2024) Alternative splicing decouples local from global PRC2 activity.; Mol Cell, 84: 1049-1061.e8 |
|
GSE223666 |
| Arends, Tessa et al. (2026) DUX4-induced HSATII RNA accumulation drives protein aggregation, impacting RNA processing pathways.; J Cell Biol, 225: [no pages] |
|
GSE287247 |