List of all 16,687 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Attwood, Benjamin K et al. (2011) Neuropsin cleaves EphB2 in the amygdala to control anxiety.; Nature, 473: 372-5 |
|
GSE27088 |
| Atwood, Ann et al. (2011) Cell-autonomous circadian clock of hepatocytes drives rhythms in transcription and polyamine synthesis.; Proc Natl Acad Sci U S A, 108: 18560-5 |
|
GSE31049 |
| Au, Kin Fai et al. (2010) Detection of splice junctions from paired-end RNA-seq data by SpliceMap.; Nucleic Acids Res, 38: 4570-8 |
|
GSE19166 |
| Au, Ngan Pan Bennett et al. (2022) Clinically relevant small-molecule promotes nerve repair and visual function recovery.; NPJ Regen Med, 7: 50 |
|
GSE200112 |
| Au, Ngan Pan Bennett et al. (2023) Genome-wide study reveals novel roles for formin-2 in axon regeneration as a microtubule dynamics regulator and therapeutic target for nerve repair.; Neuron, 111: 3970-3987.e8 |
|
GSE243896 |
| Au, Ngan Pan Bennett et al. (2024) Low-dose ionizing radiation promotes motor recovery and brain rewiring by resolving inflammatory response after brain injury and stroke.; Brain Behav Immun, 115: 43-63 |
|
GSE244016 |
| Au, Sam H et al. (2013) Cellular bias on the microscale: probing the effects of digital microfluidic actuation on mammalian cell health, fitness and phenotype.; Integr Biol (Camb), 5: 1014-25 |
|
GSE43507 |
| Aubert, Pamela et al. (2012) Homeostatic tissue responses in skin biopsies from NOMID patients with constitutive overproduction of IL-1?.; PLoS One, 7: e49408 |
|
GSE27864 |
| Aubé, Fabien et al. (2024) Metabolism-dependent secondary effect of anti-MAPK cancer therapy on DNA repair.; NAR Cancer, 6: zcae019 |
|
GSE232604 GSE233122 GSE232709 GSE233121 GSE233120 GSE232551 |
| Auclair, Ghislain et al. (2014) Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse.; Genome Biol, 15: 545 |
|
GSE60334 |
| Audette, Dylan S et al. (2016) Prox1 and fibroblast growth factor receptors form a novel regulatory loop controlling lens fiber differentiation and gene expression.; Development, 143: 318-28 |
|
GSE69940 |
| Auffray, Cedric et al. (2007) Monitoring of blood vessels and tissues by a population of monocytes with patrolling behavior.; Science, 317: 666-70 |
|
GSE8294 |
| Augello, Michael A et al. (2013) Convergence of oncogenic and hormone receptor pathways promotes metastatic phenotypes.; J Clin Invest, 123: 493-508 |
|
GSE40794 |
| Augustine, Christina K et al. (2010) Gene expression signatures as a guide to treatment strategies for in-transit metastatic melanoma.; Mol Cancer Ther, 9: 779-90 |
|
GSE10282 GSE10916 GSE19293 |
| Aukema, Sietse M et al. (2014) Biological characterization of adult MYC-translocation-positive mature B-cell lymphomas other than molecular Burkitt lymphoma.; Haematologica, 99: 726-35 |
|
GSE44164 |
| Auman, James Todd et al. (2008) Celecoxib pre-treatment in human colorectal adenocarcinoma patients is associated with gene expression alterations suggestive of diminished cellular proliferation.; Eur J Cancer, 44: 1754-60 |
|
GSE11237 |
| Aupperlee, Mark D et al. (2015) Puberty-specific promotion of mammary tumorigenesis by a high animal fat diet.; Breast Cancer Res, 17: 138 |
|
GSE74294 GSE73983 |
| Ausejo-Mauleon, Iker et al. (2023) TIM-3 blockade in diffuse intrinsic pontine glioma models promotes tumor regression and antitumor immune memory.; Cancer Cell, 41: 1911-1926.e8 |
|
GSE223859 |
| Austah, Obadah N et al. (2022) Trigeminal neurons control immune-bone cell interaction and metabolism in apical periodontitis.; Cell Mol Life Sci, 79: 330 |
|
GSE198091 |
| Autry, Anita E et al. (2021) Urocortin-3neurons in the mouse perifornical area promote infant-directed neglect and aggression.; Elife, 10: [no pages] |
|
GSE161507 |
| Autry, Robert J et al. (2020) Integrative genomic analyses reveal mechanisms of glucocorticoid resistance in acute lymphoblastic leukemia.; Nat Cancer, 1: 329-344 |
|
GSE115384 |
| Auvergne, Romane M et al. (2013) Transcriptional differences between normal and glioma-derived glial progenitor cells identify a core set of dysregulated genes.; Cell Rep, 3: 2127-41 |
|
GSE29796 |
| Auzmendi-Iriarte, Jaione et al. (2022) Chaperone-Mediated Autophagy Controls Proteomic and Transcriptomic Pathways to Maintain Glioma Stem Cell Activity.; Cancer Res, 82: 1283-1297 |
|
GSE181556 |
| Avalle, Lidia et al. (2017) MicroRNAs-143 and -145 induce epithelial to mesenchymal transition and modulate the expression of junction proteins.; Cell Death Differ, 24: 1750-1760 |
|
GSE98689 |
| Avasarala, Jagannadha R et al. (2008) Microarray analysis in B cells among siblings with/without MS - role for transcription factor TCF2.; BMC Med Genomics, 1: 2 |
|
GSE10064 |
| Avey, Denis et al. (2018) Single-Cell RNA-Seq Uncovers a Robust Transcriptional Response to Morphine by Glia.; Cell Rep, 24: 3619-3629.e4 |
|
GSE118918 |
| Avila-Martin, Gerardo et al. (2017) Treatment with albumin-hydroxyoleic acid complex restores sensorimotor function in rats with spinal cord injury: Efficacy and gene expression regulation.; PLoS One, 12: e0189151 |
|
GSE104317 |
| Aviram, Rona et al. (2021) Ultradian rhythms of AKT phosphorylation and gene expression emerge in the absence of the circadian clock components Per1 and Per2.; PLoS Biol, 19: e3001492 |
|
GSE171975 |
| Avraham, Oshri et al. (2022) Analysis of neuronal injury transcriptional response identifies CTCF and YY1 as co-operating factors regulating axon regeneration.; Front Mol Neurosci, 15: 967472 |
|
GSE138480 |
| Avraham, Roi et al. (2015) Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses.; Cell, 162: 1309-21 |
|
GSE65530 |
| Avraham, Roy et al. (2023) Antiviral activity of glucosylceramide synthase inhibitors in alphavirus infection of the central nervous system.; Brain Commun, 5: fcad086 |
|
GSE171912 |
| Avrampou, Kleopatra et al. (2019) RGS4 Maintains Chronic Pain Symptoms in Rodent Models.; J Neurosci, 39: 8291-8304 |
|
GSE138024 |
| Avvakumov, Nikita et al. (2012) Conserved molecular interactions within the HBO1 acetyltransferase complexes regulate cell proliferation.; Mol Cell Biol, 32: 689-703 |
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GSE33220.1 GSE33220.3 |
| Awad, Dominik et al. (2024) Adipose Triglyceride Lipase Is a Therapeutic Target in Advanced Prostate Cancer That Promotes Metabolic Plasticity.; Cancer Res, 84: 703-724 |
|
GSE243159 |
| Awano, Hiroyuki et al. (2015) Restoration of Functional Glycosylation of ?-Dystroglycan in FKRP Mutant Mice Is Associated with Muscle Regeneration.; Am J Pathol, 185: 2025-37 |
|
GSE67032 |
| Axisa, Pierre-Paul et al. (2022) A multiple sclerosis-protective coding variant reveals an essential role for HDAC7 in regulatory T cells.; Sci Transl Med, 14: eabl3651 |
|
GSE215817 |
| Ayari, Hanène et al. (2013) Identification of two genes potentially associated in iron-heme homeostasis in human carotid plaque using microarray analysis.; J Biosci, 38: 311-5 |
|
GSE43292 |
| Ayash, Sarah et al. (2023) Fear circuit-based neurobehavioral signatures mirror resilience to chronic social stress in mouse.; Proc Natl Acad Sci U S A, 120: e2205576120 |
|
GSE161726 |
| Aydin, Begüm et al. [Unknown date]Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.; Nat Neurosci, 22: 897-908 |
|
GSE114173 |
| Aydin, Dorothee et al. (2011) Comparative transcriptome profiling of amyloid precursor protein family members in the adult cortex.; BMC Genomics, 12: 160 |
|
GSE25926 |
| Aydin, Selcan et al. (2025) Cross cell-type systems genetics reveals the influence of eQTL at multiple points in the developmental trajectory of mouse neural progenitor cells.; bioRxiv, [no vol.]: [no pages] |
|
GSE285231 |
| Ayers, Mark et al. (2007) Discovery and validation of biomarkers that respond to treatment with brivanib alaninate, a small-molecule VEGFR-2/FGFR-1 antagonist.; Cancer Res, 67: 6899-906 |
|
GSE7208 |
| Ayoub, Albert E et al. (2011) Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing.; Proc Natl Acad Sci U S A, 108: 14950-5 |
|
GSE30765 |
| Ayoub, Albert E et al. (2019) Coordination of Neuron Production in Mouse and Human Cerebral Cortex by the Homolog of Drosophila Mastermind Protein.; Brain Behav Evol, 93: 152-165 |
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GSE76491.2 GSE76491.1 |
| Ayrault, Olivier et al. (2010) Atoh1 inhibits neuronal differentiation and collaborates with Gli1 to generate medulloblastoma-initiating cells.; Cancer Res, 70: 5618-27 |
|
GSE19684 |
| Aytes, Alvaro et al. (2013) ETV4 promotes metastasis in response to activation of PI3-kinase and Ras signaling in a mouse model of advanced prostate cancer.; Proc Natl Acad Sci U S A, 110: E3506-15 |
|
GSE47697 |
| Aytes, Alvaro et al. (2014) Cross-Species Regulatory Network Analysis Identifies a Synergistic Interaction between FOXM1 and CENPF that Drives Prostate Cancer Malignancy.; Cancer Cell, 25: 638-51 |
|
GSE53202 |
| Ayuso-García, Paula et al. (2024) Neddylation orchestrates the complex transcriptional and posttranscriptional program that drives Schwann cell myelination.; Sci Adv, 10: eadm7600 |
|
GSE241269 |
| Azatyan, Ani et al. (2021) Circular RNAs in Hedgehog Signaling Activation and Hedgehog-Mediated Medulloblastoma Tumors.; Cancers (Basel), 13: [no pages] |
|
GSE183194.1 |
| Azevedo-Pereira, Ricardo L et al. (2023) Decoding the molecular crosstalk between grafted stem cells and the stroke-injured brain.; Cell Rep, 42: 112353 |
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GSE150710.1 GSE150710.2 |
| Azhar, Muhammad et al. (2023) The arginine methyltransferase Prmt1 coordinates the germline arginine methylome essential for spermatogonial homeostasis and male fertility.; Nucleic Acids Res, 51: 10428-10450 |
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GSE227857 |
| Azim, Kasum et al. (2015) Transcriptional Hallmarks of Heterogeneous Neural Stem Cell Niches of the Subventricular Zone.; Stem Cells, 33: 2232-42 |
|
GSE60905 |
| Aziz, Nadine M et al. [Unknown date]Lifespan analysis of brain development, gene expression and behavioral phenotypes in the Ts1Cje, Ts65Dn and Dp(16)1/Yey mouse models of Down syndrome.; Dis Model Mech, 11: [no pages] |
|
GSE99135 |
| Azizan, Elena A B et al. (2013) Somatic mutations in ATP1A1 and CACNA1D underlie a common subtype of adrenal hypertension.; Nat Genet, 45: 1055-60 |
|
GSE48303 |
| Azotla-Vilchis, Cuauhtli N et al. (2021) Transcriptome Analysis Reveals Altered Inflammatory Pathway in an Inducible Glial Cell Model of Myotonic Dystrophy Type 1.; Biomolecules, 11: [no pages] |
|
GSE164057 |
| Azuma, Noriyuki et al. (2023) Integrator complex subunit 15 controls mRNA splicing and is critical for eye development.; Hum Mol Genet, 32: 2032-2045 |
|
GSE186331 |
| Azzarelli, Roberta et al. [Unknown date]Multi-site Neurogenin3 Phosphorylation Controls Pancreatic Endocrine Differentiation.; Dev Cell, 41: 274-286.e5 |
|
GSE96707 |
| Azzolin, Luca et al. (2014) YAP/TAZ incorporation in the ?-catenin destruction complex orchestrates the Wnt response.; Cell, 158: 157-70 |
|
GSE55622 |
| Azzopardi, Stephanie A et al. (2024) Role of iRhom2 in Olfaction: Implications for Odorant Receptor Regulation and Activity-Dependent Adaptation.; Int J Mol Sci, 25: [no pages] |
|
GSE268171 |
| Baba, Rina et al. (2021) LSD1 enzyme inhibitor TAK-418 unlocks aberrant epigenetic machinery and improves autism symptoms in neurodevelopmental disorder models.; Sci Adv, 7: [no pages] |
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GSE165660.2 GSE165660.1 |
| Baba, T et al. (2009) Epigenetic regulation of CD133 and tumorigenicity of CD133+ ovarian cancer cells.; Oncogene, 28: 209-18 |
|
GSE25428 |
| Babaniyi, Olusegun et al. (2023) Modelling acute glucocorticoid transcriptome response in human embryonic stem cell derived neural cultures.; Stem Cell Res, 69: 103086 |
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GSE205890 |
| Babey, Muriel E et al. (2024) A maternal brain hormone that builds bone.; Nature, 632: 357-365 |
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GSE248881 GSE248880 GSE248879 |
| Babikian, Talin et al. (2010) Molecular and physiological responses to juvenile traumatic brain injury: focus on growth and metabolism.; Dev Neurosci, 32: 431-41 |
|
GSE2871 |
| Babu, Mohan et al. (2023) ApoA-I Nanotherapy Rescues Postischemic Vascular Maladaptation by Modulating Endothelial Cell and Macrophage Phenotypes in Type 2 Diabetic Mice.; Arterioscler Thromb Vasc Biol, 43: e46-e61 |
|
GSE197392 |
| Babu, Vishnu Suresh et al. (2022) Integrated Analysis of Cancer Tissue and Vitreous Humor from Retinoblastoma Eyes Reveals Unique Tumor-Specific Metabolic and Cellular Pathways in Advanced and Non-Advanced Tumors.; Cells, 11: [no pages] |
|
GSE208143 |
| Baccarella, Alyssa et al. (2013) Toll-like receptor 7 mediates early innate immune responses to malaria.; Infect Immun, 81: 4431-42 |
|
GSE41496 |
| Bacher, Ulrike et al. (2012) Multilineage dysplasia does not influence prognosis in CEBPA-mutated AML, supporting the WHO proposal to classify these patients as a unique entity.; Blood, 119: 4719-22 |
|
GSE33223 |
| Bachet, Jean-Baptiste et al. (2013) Gene expression patterns of hemizygous and heterozygous KIT mutations suggest distinct oncogenic pathways: a study in NIH3T3 cell lines and GIST samples.; PLoS One, 8: e61103 |
|
GSE33968 |
| Bachireddy, Pavan et al. (2014) Reversal of in situ T-cell exhaustion during effective human antileukemia responses to donor lymphocyte infusion.; Blood, 123: 1412-21 |
|
GSE49067 |
| Bachmann, Julie et al. (2011) Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range.; Mol Syst Biol, 7: 516 |
|
GSE26151 |
| Bachmann, Radu et al. (2022) Akkermansia muciniphilaReduces Peritonitis and Improves Intestinal Tissue Wound Healing after a Colonic Transmural Defect by a MyD88-Dependent Mechanism.; Cells, 11: [no pages] |
|
GSE211506 |
| Bachtiary, Barbara et al. (2006) Gene expression profiling in cervical cancer: an exploration of intratumor heterogeneity.; Clin Cancer Res, 12: 5632-40 |
|
GSE5787 |
| Bachy, Emmanuel et al. (2016) CD1d-restricted peripheral T cell lymphoma in mice and humans.; J Exp Med, 213: 841-57 |
|
GSE63264 |
| Backman, Stéphanie et al. (2014) Glucocorticoid-induced reversal of interleukin-1β-stimulated inflammatory gene expression in human oviductal cells.; PLoS One, 9: e97997 |
|
GSE54608 |
| Backus, Gillian S et al. (2010) Protective role of interleukin-10 in ozone-induced pulmonary inflammation.; Environ Health Perspect, 118: 1721-7 |
|
GSE25095 |
| Badat, Mohsin et al. (2023) Direct correction of haemoglobin E β-thalassaemia using base editors.; Nat Commun, 14: 2238 |
|
GSE206098 |
| Badea, Liviu et al. (2008) Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia.; Hepatogastroenterology, 55: 2016-27 |
|
GSE15471 |
| Badenetti, Lorenzo et al. (2024) Multi-omic analysis of a mucolipidosis II neuronal cell model uncovers involvement of pathways related to neurodegeneration and drug metabolism.; Mol Genet Metab, 143: 108596 |
|
GSE273794 |
| Badesso, Sara et al. (2022) Docosahexaenoic Acid Ameliorates Contextual Fear Memory Deficits in the Tg2576 Alzheimer's Disease Mouse Model: Cellular and Molecular Correlates.; Pharmaceutics, 15: [no pages] |
|
GSE217430 |
| Badve, Sunil et al. (2012) Molecular analysis of thymoma.; PLoS One, 7: e42669 |
|
GSE29695 |
| Bae, Dongsoon et al. (2009) Bypass of hexavalent chromium-induced growth arrest by a protein tyrosine phosphatase inhibitor: enhanced survival and mutagenesis.; Mutat Res, 660: 40-6 |
|
GSE12205 |
| Bae, Eunnyung et al. (2022) Integrin α3β1 promotes vessel formation of glioblastoma-associated endothelial cells through calcium-mediated macropinocytosis and lysosomal exocytosis.; Nat Commun, 13: 4268 |
|
GSE137900 GSE137901 |
| Bae, Jung Hyun et al. (2022) Gatekeeping role ofNf2/Merlin in vascular tip EC induction through suppression of VEGFR2 internalization.; Sci Adv, 8: eabn2611 |
|
GSE186189 |
| Ávila-Mendoza, José et al. (2020) Molecular Mechanisms for Krüppel-Like Factor 13 Actions in Hippocampal Neurons.; Mol Neurobiol, [no vol.]: [no pages] |
|
GSE148384 |