List of all 17,685 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Arutyunov, Artem et al. (2024) West Nile Virus-Induced Expression of Senescent GeneLgals3bpRegulates Microglial Phenotype within Cerebral Cortex.; Biomolecules, 14: [no pages] |
|
GSE270687 |
| Arya, Michelle A et al. (2013) Notch pathway activation contributes to inhibition of C2C12 myoblast differentiation by ethanol.; PLoS One, 8: e71632 |
|
GSE46492 |
| Aryal, Sameer et al. (2021) Genetic removal of p70 S6K1 corrects coding sequence length-dependent alterations in mRNA translation in fragile X syndrome mice.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE143659 |
| Aryee, D N T et al. (2013) Variability in functional p53 reactivation by PRIMA-1(Met)/APR-246 in Ewing sarcoma.; Br J Cancer, [no vol.]: [no pages] |
|
GSE49967 |
| Asaduzzaman, Muhammad et al. (2017) Tumour suppressor EP300, a modulator of paclitaxel resistance and stemness, is downregulated in metaplastic breast cancer.; Breast Cancer Res Treat, 163: 461-474 |
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GSE76200 |
| Asahina, Kinji et al. (2020) Moderate alcohol intake promotes pancreatic ductal adenocarcinoma development in mice expressing oncogenic Kras.; Am J Physiol Gastrointest Liver Physiol, 318: G265-G276 |
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GSE139357 |
| Asakawa, Yuta et al. (2020) Epstein-Barr virus-positive gastric cancer involves enhancer activation through activating transcription factor 3.; Cancer Sci, 111: 1818-1828 |
|
GSE141385 |
| Asangani, Irfan A et al. (2014) Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer.; Nature, 510: 278-82 |
|
GSE55063 |
| Asano, Hirotsugu et al. (2025) Ropinirole Functions Through a Dopamine Receptor D2-Independent Mechanism to Ameliorate Amyotrophic Lateral Sclerosis Phenotypes in TARDBP-Mutant iPSC-Derived Motor Neurons.; J Neurochem, 169: e70183 |
|
GSE283507 |
| Asantewaa, Gloria et al. (2024) Glutathione synthesis in the mouse liver supports lipid abundance through NRF2 repression.; Nat Commun, 15: 6152 |
|
GSE263190 GSE263119 |
| Aschauer, Constantin et al. (2017) Positioning of Tacrolimus for the Treatment of Diabetic Nephropathy Based on Computational Network Analysis.; PLoS One, 12: e0169518 |
|
GSE84908 |
| Asgarian, Zeinab et al. (2022) MTG8 interacts with LHX6 to specify cortical interneuron subtype identity.; Nat Commun, 13: 5217 |
|
GSE207506 |
| Asgharzadeh, Shahab et al. (2006) Prognostic significance of gene expression profiles of metastatic neuroblastomas lacking MYCN gene amplification.; J Natl Cancer Inst, 98: 1193-203 |
|
GSE3446 |
| Ashida, Shingo et al. (2012) Integrated analysis reveals critical genomic regions in prostate tumor microenvironment associated with clinicopathologic phenotypes.; Clin Cancer Res, 18: 1578-87 |
|
GSE34312 |
| Ashokan, Akash et al. (2024) Simultaneous targeting of peripheral and brain tumors with a therapeutic nanoparticle to disrupt metabolic adaptability at both sites.; Proc Natl Acad Sci U S A, 121: e2318119121 |
|
GSE264575 |
| Ashraf, Sadia et al. (2019) Nuclear receptor subfamily 4 group A member 2 inhibits activation of ERK signaling and cell growth in response to β-adrenergic stimulation in adult rat cardiomyocytes.; Am J Physiol Cell Physiol, 317: C513-C524 |
|
GSE122911 |
| Ashton, John M et al. (2012) Gene sets identified with oncogene cooperativity analysis regulate in vivo growth and survival of leukemia stem cells.; Cell Stem Cell, 11: 359-72 |
|
GSE37907 |
| Ashton, Kevin J et al. (2013) Unique transcriptional profile of sustained ligand-activated preconditioning in pre- and post-ischemic myocardium.; PLoS One, 8: e72278 |
|
GSE39407 |
| Asiedu, Michael K et al. (2018) Patient- and Cell Type-Specific Heterogeneity of Metformin Response.; Basic Clin Pharmacol Toxicol, 122: 214-222 |
|
GSE95298 |
| Askar, Parizat et al. (2022) The Etv1/Er81 transcription factor coordinates myelination-related genes to regulate Schwann cell differentiation and myelination.; Ann Transl Med, 10: 875 |
|
GSE163132 |
| Askenase, Michael H et al. (2021) Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage.; Sci Immunol, 6: [no pages] |
|
GSE163256 |
| Askovich, Peter S et al. (2013) Differential host response, rather than early viral replication efficiency, correlates with pathogenicity caused by influenza viruses.; PLoS One, 8: e74863 |
|
GSE42285 |
| Aspuria, Paul-Joseph et al. (2020) HOXB13 controls cell state through super-enhancers.; Exp Cell Res, 393: 112039 |
|
GSE145813 |
| Asrani, Kaushal et al. (2021) Reciprocal YAP1 loss and INSM1 expression in neuroendocrine prostate cancer.; J Pathol, 255: 425-437 |
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GSE182407 |
| Asrican, Brent et al. (2020) Neuropeptides Modulate Local Astrocytes to Regulate Adult Hippocampal Neural Stem Cells.; Neuron, 108: 349-366.e6 |
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GSE137052 |
| Assassi, Shervin et al. (2013) Skin gene expression correlates of severity of interstitial lung disease in systemic sclerosis.; Arthritis Rheum, 65: 2917-27 |
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GSE47162 |
| Assassi, Shervin et al. (2019) Myeloablation followed by autologous stem cell transplantation normalises systemic sclerosis molecular signatures.; Ann Rheum Dis, 78: 1371-1378 |
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GSE130953 |
| Assassi, Shervin et al. (2022) Peripheral blood gene expression profiling shows predictive significance for response to mycophenolate in systemic sclerosis-related interstitial lung disease.; Ann Rheum Dis, 81: 854-860 |
|
GSE181228 |
| Asselin-Labat, Marie-Liesse et al. (2010) Control of mammary stem cell function by steroid hormone signalling.; Nature, 465: 798-802 |
|
GSE20402 GSE20401 |
| Assi, Salam A et al. (2019) Subtype-specific regulatory network rewiring in acute myeloid leukemia.; Nat Genet, 51: 151-162 |
|
GSE108266 |
| Assis-Mendonça, Guilherme Rossi et al. (2023) Transcriptome analyses of the cortex and white matter of focal cortical dysplasia type II: Insights into pathophysiology and tissue characterization.; Front Neurol, 14: 1023950 |
|
GSE213488 |
| Astapova, Inna et al. (2008) The nuclear corepressor, NCoR, regulates thyroid hormone action in vivo.; Proc Natl Acad Sci U S A, 105: 19544-9 |
|
GSE10001 |
| Astolfi, Annalisa et al. (2010) A molecular portrait of gastrointestinal stromal tumors: an integrative analysis of gene expression profiling and high-resolution genomic copy number.; Lab Invest, 90: 1285-94 |
|
GSE20708 |
| Astro, Veronica et al. (2025) An iPSC-based model of 47,XYY Jacobs syndrome reveals a DNA methylation-independent transcriptional dysregulation shared with male X aneuploid cells.; Genome Res, 35: 1503-1517 |
|
GSE264395 |
| Atala, Anthony (2020) Re: Inhibition of a G9a/DNMT Network Triggers Immune-Mediated Bladder Cancer Regression.; J Urol, 203: 885 |
|
GSE115485 |
| Ataman, Bulent et al. (2016) Evolution of Osteocrin as an activity-regulated factor in the primate brain.; Nature, 539: 242-247 |
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GSE78688.1 GSE78688.2 GSE78688.3 |
| Atarashi, Koji et al. (2017) Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation.; Science, 358: 359-365 |
|
GSE101678 |
| Aterido, Adrià et al. (2014) Novel insights into the regulatory architecture of CD4+ T cells in rheumatoid arthritis.; PLoS One, 9: e100690 |
|
GSE55468 |
| Ates, Gamze et al. (2024) CMS121 Partially Attenuates Disease Progression in Mouse Models of Huntington's Disease.; Mol Neurobiol, 61: 2165-2175 |
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GSE223847 |
| Athippozhy, Antony et al. (2011) Differential gene expression in liver and small intestine from lactating rats compared to age-matched virgin controls detects increased mRNA of cholesterol biosynthetic genes.; BMC Genomics, 12: 95 |
|
GSE19175 |
| Athota, Pranavi et al. (2023) Novel RNA-Seq Signatures Post-Methamphetamine and Oxycodone Use in a Model of HIV-Associated Neurocognitive Disorders.; Viruses, 15: [no pages] |
|
GSE236466 |
| Athwal, Harleen K et al. (2019) Sox10 Regulates Plasticity of Epithelial Progenitors toward Secretory Units of Exocrine Glands.; Stem Cell Reports, 12: 366-380 |
|
GSE123341 |
| Attilio, Peter J et al. (2021) Transcriptomic Analysis of Mouse Brain After Traumatic Brain Injury Reveals That the Angiotensin Receptor Blocker Candesartan Acts Through Novel Pathways.; Front Neurosci, 15: 636259 |
|
GSE163415 |
| Attoff, Kristina et al. (2017) Whole genome microarray analysis of neural progenitor C17.2 cells during differentiation and validation of 30 neural mRNA biomarkers for estimation of developmental neurotoxicity.; PLoS One, 12: e0190066 |
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GSE97337 |
| Attwood, Benjamin K et al. (2011) Neuropsin cleaves EphB2 in the amygdala to control anxiety.; Nature, 473: 372-5 |
|
GSE27088 |
| Atwood, Ann et al. (2011) Cell-autonomous circadian clock of hepatocytes drives rhythms in transcription and polyamine synthesis.; Proc Natl Acad Sci U S A, 108: 18560-5 |
|
GSE31049 |
| Au, Kin Fai et al. (2010) Detection of splice junctions from paired-end RNA-seq data by SpliceMap.; Nucleic Acids Res, 38: 4570-8 |
|
GSE19166 |
| Au, Ngan Pan Bennett et al. (2022) Clinically relevant small-molecule promotes nerve repair and visual function recovery.; NPJ Regen Med, 7: 50 |
|
GSE200112 |
| Au, Ngan Pan Bennett et al. (2023) Genome-wide study reveals novel roles for formin-2 in axon regeneration as a microtubule dynamics regulator and therapeutic target for nerve repair.; Neuron, 111: 3970-3987.e8 |
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GSE243896 |
| Au, Ngan Pan Bennett et al. (2024) Low-dose ionizing radiation promotes motor recovery and brain rewiring by resolving inflammatory response after brain injury and stroke.; Brain Behav Immun, 115: 43-63 |
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GSE244016 |
| Au, Sam H et al. (2013) Cellular bias on the microscale: probing the effects of digital microfluidic actuation on mammalian cell health, fitness and phenotype.; Integr Biol (Camb), 5: 1014-25 |
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GSE43507 |
| Aubert, Pamela et al. (2012) Homeostatic tissue responses in skin biopsies from NOMID patients with constitutive overproduction of IL-1?.; PLoS One, 7: e49408 |
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GSE27864 |
| Aubrey, Brandon J et al. (2018) Mutant TRP53 exerts a target gene-selective dominant-negative effect to drive tumor development.; Genes Dev, 32: 1420-1429 |
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GSE111950 |
| Aubé, Fabien et al. (2024) Metabolism-dependent secondary effect of anti-MAPK cancer therapy on DNA repair.; NAR Cancer, 6: zcae019 |
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GSE232604 GSE233122 GSE232709 GSE233121 GSE233120 GSE232551 |
| Auclair, Ghislain et al. (2014) Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse.; Genome Biol, 15: 545 |
|
GSE60334 |
| Audette, Dylan S et al. (2016) Prox1 and fibroblast growth factor receptors form a novel regulatory loop controlling lens fiber differentiation and gene expression.; Development, 143: 318-28 |
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GSE69940 |
| Auffray, Cedric et al. (2007) Monitoring of blood vessels and tissues by a population of monocytes with patrolling behavior.; Science, 317: 666-70 |
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GSE8294 |
| Augello, Michael A et al. (2013) Convergence of oncogenic and hormone receptor pathways promotes metastatic phenotypes.; J Clin Invest, 123: 493-508 |
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GSE40794 |
| Augustin, Emma et al. (2025) Hippocampal Astrocyte Morphology Follows an Unexpected Trajectory With Age in a Transgenic Rodent Model of Tauopathy.; Glia, 73: 1502-1519 |
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GSE264248 GSE246775 |
| Augustine, Christina K et al. (2010) Gene expression signatures as a guide to treatment strategies for in-transit metastatic melanoma.; Mol Cancer Ther, 9: 779-90 |
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GSE10282 GSE10916 GSE19293 |
| Aukema, Sietse M et al. (2014) Biological characterization of adult MYC-translocation-positive mature B-cell lymphomas other than molecular Burkitt lymphoma.; Haematologica, 99: 726-35 |
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GSE44164 |
| Auletta, Beatrice et al. (2025) Tissue-engineered neuromuscular organoids.; Commun Biol, 8: 1074 |
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GSE226477 |
| Auman, James Todd et al. (2008) Celecoxib pre-treatment in human colorectal adenocarcinoma patients is associated with gene expression alterations suggestive of diminished cellular proliferation.; Eur J Cancer, 44: 1754-60 |
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GSE11237 |
| Aupperlee, Mark D et al. (2015) Puberty-specific promotion of mammary tumorigenesis by a high animal fat diet.; Breast Cancer Res, 17: 138 |
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GSE74294 GSE73983 |
| Ausejo-Mauleon, Iker et al. (2023) TIM-3 blockade in diffuse intrinsic pontine glioma models promotes tumor regression and antitumor immune memory.; Cancer Cell, 41: 1911-1926.e8 |
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GSE223859 |
| Austah, Obadah N et al. (2022) Trigeminal neurons control immune-bone cell interaction and metabolism in apical periodontitis.; Cell Mol Life Sci, 79: 330 |
|
GSE198091 |
| Autry, Anita E et al. (2021) Urocortin-3neurons in the mouse perifornical area promote infant-directed neglect and aggression.; Elife, 10: [no pages] |
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GSE161507 |
| Autry, Robert J et al. (2020) Integrative genomic analyses reveal mechanisms of glucocorticoid resistance in acute lymphoblastic leukemia.; Nat Cancer, 1: 329-344 |
|
GSE115384 |
| Auvergne, Romane M et al. (2013) Transcriptional differences between normal and glioma-derived glial progenitor cells identify a core set of dysregulated genes.; Cell Rep, 3: 2127-41 |
|
GSE29796 |
| Auzmendi-Iriarte, Jaione et al. (2022) Chaperone-Mediated Autophagy Controls Proteomic and Transcriptomic Pathways to Maintain Glioma Stem Cell Activity.; Cancer Res, 82: 1283-1297 |
|
GSE181556 |
| Avalle, Lidia et al. (2017) MicroRNAs-143 and -145 induce epithelial to mesenchymal transition and modulate the expression of junction proteins.; Cell Death Differ, 24: 1750-1760 |
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GSE98689 |
| Avasarala, Jagannadha R et al. (2008) Microarray analysis in B cells among siblings with/without MS - role for transcription factor TCF2.; BMC Med Genomics, 1: 2 |
|
GSE10064 |
| Avey, Denis et al. (2018) Single-Cell RNA-Seq Uncovers a Robust Transcriptional Response to Morphine by Glia.; Cell Rep, 24: 3619-3629.e4 |
|
GSE118918 |
| Avila-Martin, Gerardo et al. (2017) Treatment with albumin-hydroxyoleic acid complex restores sensorimotor function in rats with spinal cord injury: Efficacy and gene expression regulation.; PLoS One, 12: e0189151 |
|
GSE104317 |
| Aviram, Rona et al. (2021) Ultradian rhythms of AKT phosphorylation and gene expression emerge in the absence of the circadian clock components Per1 and Per2.; PLoS Biol, 19: e3001492 |
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GSE171975 |
| Avraham, Oshri et al. (2022) Analysis of neuronal injury transcriptional response identifies CTCF and YY1 as co-operating factors regulating axon regeneration.; Front Mol Neurosci, 15: 967472 |
|
GSE138480 |
| Avraham, Roi et al. (2015) Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses.; Cell, 162: 1309-21 |
|
GSE65530 |
| Avraham, Roy et al. (2023) Antiviral activity of glucosylceramide synthase inhibitors in alphavirus infection of the central nervous system.; Brain Commun, 5: fcad086 |
|
GSE171912 |
| Avrampou, Kleopatra et al. (2019) RGS4 Maintains Chronic Pain Symptoms in Rodent Models.; J Neurosci, 39: 8291-8304 |
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GSE138024 |
| Avvakumov, Nikita et al. (2012) Conserved molecular interactions within the HBO1 acetyltransferase complexes regulate cell proliferation.; Mol Cell Biol, 32: 689-703 |
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GSE33220.1 GSE33220.3 |
| Awad, Dominik et al. (2024) Adipose Triglyceride Lipase Is a Therapeutic Target in Advanced Prostate Cancer That Promotes Metabolic Plasticity.; Cancer Res, 84: 703-724 |
|
GSE243159 |
| Awano, Hiroyuki et al. (2015) Restoration of Functional Glycosylation of ?-Dystroglycan in FKRP Mutant Mice Is Associated with Muscle Regeneration.; Am J Pathol, 185: 2025-37 |
|
GSE67032 |
| Axisa, Pierre-Paul et al. (2022) A multiple sclerosis-protective coding variant reveals an essential role for HDAC7 in regulatory T cells.; Sci Transl Med, 14: eabl3651 |
|
GSE215817 |
| Ayari, Hanène et al. (2013) Identification of two genes potentially associated in iron-heme homeostasis in human carotid plaque using microarray analysis.; J Biosci, 38: 311-5 |
|
GSE43292 |
| Ayash, Sarah et al. (2023) Fear circuit-based neurobehavioral signatures mirror resilience to chronic social stress in mouse.; Proc Natl Acad Sci U S A, 120: e2205576120 |
|
GSE161726 |
| Ávila-Mendoza, José et al. (2020) Molecular Mechanisms for Krüppel-Like Factor 13 Actions in Hippocampal Neurons.; Mol Neurobiol, [no vol.]: [no pages] |
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GSE148384 |