List of all 17,685 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Ayata, Pinar et al. (2025) Lymphoid gene expression supports neuroprotective microglia function.; Nature, [no vol.]: [no pages] |
|
GSE296769 |
| Aydin, Begüm et al. (2019) Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.; Nat Neurosci, 22: 897-908 |
|
GSE114173 |
| Aydin, Dorothee et al. (2011) Comparative transcriptome profiling of amyloid precursor protein family members in the adult cortex.; BMC Genomics, 12: 160 |
|
GSE25926 |
| Aydin, Selcan et al. (2025) Cross cell-type systems genetics reveals the influence of eQTL at multiple points in the developmental trajectory of mouse neural progenitor cells.; bioRxiv, [no vol.]: [no pages] |
|
GSE285231 |
| Ayers, Mark et al. (2007) Discovery and validation of biomarkers that respond to treatment with brivanib alaninate, a small-molecule VEGFR-2/FGFR-1 antagonist.; Cancer Res, 67: 6899-906 |
|
GSE7208 |
| Ayoub, Albert E et al. (2011) Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing.; Proc Natl Acad Sci U S A, 108: 14950-5 |
|
GSE30765 |
| Ayoub, Albert E et al. (2019) Coordination of Neuron Production in Mouse and Human Cerebral Cortex by the Homolog of Drosophila Mastermind Protein.; Brain Behav Evol, 93: 152-165 |
|
GSE76491.2 GSE76491.1 |
| Ayrault, Olivier et al. (2010) Atoh1 inhibits neuronal differentiation and collaborates with Gli1 to generate medulloblastoma-initiating cells.; Cancer Res, 70: 5618-27 |
|
GSE19684 |
| Aytes, Alvaro et al. (2013) ETV4 promotes metastasis in response to activation of PI3-kinase and Ras signaling in a mouse model of advanced prostate cancer.; Proc Natl Acad Sci U S A, 110: E3506-15 |
|
GSE47697 |
| Aytes, Alvaro et al. (2014) Cross-Species Regulatory Network Analysis Identifies a Synergistic Interaction between FOXM1 and CENPF that Drives Prostate Cancer Malignancy.; Cancer Cell, 25: 638-51 |
|
GSE53202 |
| Ayuso-García, Paula et al. (2024) Neddylation orchestrates the complex transcriptional and posttranscriptional program that drives Schwann cell myelination.; Sci Adv, 10: eadm7600 |
|
GSE241269 |
| Azatyan, Ani et al. (2021) Circular RNAs in Hedgehog Signaling Activation and Hedgehog-Mediated Medulloblastoma Tumors.; Cancers (Basel), 13: [no pages] |
|
GSE183194.1 |
| Azeem, Sayma et al. (2025) CMTR1-catalyzed 2'-O-methylation promotes NMDA receptor signaling, long-term potentiation and memory.; Prog Neurobiol, 251: 102802 |
|
GSE279686 |
| Azevedo-Pereira, Ricardo L et al. (2023) Decoding the molecular crosstalk between grafted stem cells and the stroke-injured brain.; Cell Rep, 42: 112353 |
|
GSE150710.1 GSE150710.2 |
| Azhar, Muhammad et al. (2023) The arginine methyltransferase Prmt1 coordinates the germline arginine methylome essential for spermatogonial homeostasis and male fertility.; Nucleic Acids Res, 51: 10428-10450 |
|
GSE227857 |
| Azim, Kasum et al. (2015) Transcriptional Hallmarks of Heterogeneous Neural Stem Cell Niches of the Subventricular Zone.; Stem Cells, 33: 2232-42 |
|
GSE60905 |
| Aziz, Nadine M et al. (2018) Lifespan analysis of brain development, gene expression and behavioral phenotypes in the Ts1Cje, Ts65Dn and Dp(16)1/Yey mouse models of Down syndrome.; Dis Model Mech, 11: [no pages] |
|
GSE99135 |
| Azizan, Elena A B et al. (2013) Somatic mutations in ATP1A1 and CACNA1D underlie a common subtype of adrenal hypertension.; Nat Genet, 45: 1055-60 |
|
GSE48303 |
| Azizi, Gholamreza et al. (2025) GM-CSF production by immune cells in steady state and autoimmune neuroinflammation mapped using fate reporting mice.; Front Immunol, 16: 1617074 |
|
GSE305413 |
| Azotla-Vilchis, Cuauhtli N et al. (2021) Transcriptome Analysis Reveals Altered Inflammatory Pathway in an Inducible Glial Cell Model of Myotonic Dystrophy Type 1.; Biomolecules, 11: [no pages] |
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GSE164057 |
| Azuma, Noriyuki et al. (2023) Integrator complex subunit 15 controls mRNA splicing and is critical for eye development.; Hum Mol Genet, 32: 2032-2045 |
|
GSE186331 |
| Azzarelli, Roberta et al. (2017) Multi-site Neurogenin3 Phosphorylation Controls Pancreatic Endocrine Differentiation.; Dev Cell, 41: 274-286.e5 |
|
GSE96707 |
| Azzolin, Luca et al. (2014) YAP/TAZ incorporation in the ?-catenin destruction complex orchestrates the Wnt response.; Cell, 158: 157-70 |
|
GSE55622 |
| Azzopardi, Stephanie A et al. (2024) Role of iRhom2 in Olfaction: Implications for Odorant Receptor Regulation and Activity-Dependent Adaptation.; Int J Mol Sci, 25: [no pages] |
|
GSE268171 |
| Baako, Ann K et al. (2025) MODELING TISSUE-RESIDENT MACROPHAGE DEVELOPMENT FROM MOUSE PLURIPOTENT STEM CELLS.; bioRxiv, [no vol.]: [no pages] |
|
GSE296070 |
| Baba, Rina et al. (2021) LSD1 enzyme inhibitor TAK-418 unlocks aberrant epigenetic machinery and improves autism symptoms in neurodevelopmental disorder models.; Sci Adv, 7: [no pages] |
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GSE165660.2 GSE165660.1 |
| Baba, T et al. (2009) Epigenetic regulation of CD133 and tumorigenicity of CD133+ ovarian cancer cells.; Oncogene, 28: 209-18 |
|
GSE25428 |
| Babaniyi, Olusegun et al. (2023) Modelling acute glucocorticoid transcriptome response in human embryonic stem cell derived neural cultures.; Stem Cell Res, 69: 103086 |
|
GSE205890 |
| Babey, Muriel E et al. (2024) A maternal brain hormone that builds bone.; Nature, 632: 357-365 |
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GSE248881 GSE248880 GSE248879 |
| Babikian, Talin et al. (2010) Molecular and physiological responses to juvenile traumatic brain injury: focus on growth and metabolism.; Dev Neurosci, 32: 431-41 |
|
GSE2871 |
| Babu, Mohan et al. (2023) ApoA-I Nanotherapy Rescues Postischemic Vascular Maladaptation by Modulating Endothelial Cell and Macrophage Phenotypes in Type 2 Diabetic Mice.; Arterioscler Thromb Vasc Biol, 43: e46-e61 |
|
GSE197392 |
| Babu, Vishnu Suresh et al. (2022) Integrated Analysis of Cancer Tissue and Vitreous Humor from Retinoblastoma Eyes Reveals Unique Tumor-Specific Metabolic and Cellular Pathways in Advanced and Non-Advanced Tumors.; Cells, 11: [no pages] |
|
GSE208143 |
| Baccarella, Alyssa et al. (2013) Toll-like receptor 7 mediates early innate immune responses to malaria.; Infect Immun, 81: 4431-42 |
|
GSE41496 |
| Baccouche, Basma et al. (2025) Activin A Prevents Hyperresponsiveness to Vascular Endothelial Growth Factor in Pathologic Blood Vessels by Perturbing the Trafficking of Activated Vascular Endothelial Growth Factor Receptor 2.; Am J Pathol, 195: 1736-1754 |
|
GSE291008 |
| Bacher, Ulrike et al. (2012) Multilineage dysplasia does not influence prognosis in CEBPA-mutated AML, supporting the WHO proposal to classify these patients as a unique entity.; Blood, 119: 4719-22 |
|
GSE33223 |
| Bachet, Jean-Baptiste et al. (2013) Gene expression patterns of hemizygous and heterozygous KIT mutations suggest distinct oncogenic pathways: a study in NIH3T3 cell lines and GIST samples.; PLoS One, 8: e61103 |
|
GSE33968 |
| Bachireddy, Pavan et al. (2014) Reversal of in situ T-cell exhaustion during effective human antileukemia responses to donor lymphocyte infusion.; Blood, 123: 1412-21 |
|
GSE49067 |
| Bachmann, Julie et al. (2011) Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range.; Mol Syst Biol, 7: 516 |
|
GSE26151 |
| Bachmann, Radu et al. (2022) Akkermansia muciniphilaReduces Peritonitis and Improves Intestinal Tissue Wound Healing after a Colonic Transmural Defect by a MyD88-Dependent Mechanism.; Cells, 11: [no pages] |
|
GSE211506 |
| Bachtel, Nathaniel D et al. (2025) Intestinal mast cell-derived leukotrienes mediate the anaphylactic response to ingested antigens.; Science, 389: eadp0246 |
|
GSE293561 |
| Bachtiary, Barbara et al. (2006) Gene expression profiling in cervical cancer: an exploration of intratumor heterogeneity.; Clin Cancer Res, 12: 5632-40 |
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GSE5787 |
| Bachy, Emmanuel et al. (2016) CD1d-restricted peripheral T cell lymphoma in mice and humans.; J Exp Med, 213: 841-57 |
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GSE63264 |
| Backman, Stéphanie et al. (2014) Glucocorticoid-induced reversal of interleukin-1β-stimulated inflammatory gene expression in human oviductal cells.; PLoS One, 9: e97997 |
|
GSE54608 |
| Backus, Gillian S et al. (2010) Protective role of interleukin-10 in ozone-induced pulmonary inflammation.; Environ Health Perspect, 118: 1721-7 |
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GSE25095 |
| Badat, Mohsin et al. (2023) Direct correction of haemoglobin E β-thalassaemia using base editors.; Nat Commun, 14: 2238 |
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GSE206098 |
| Badea, Liviu et al. (2008) Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia.; Hepatogastroenterology, 55: 2016-27 |
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GSE15471 |
| Badenetti, Lorenzo et al. (2024) Multi-omic analysis of a mucolipidosis II neuronal cell model uncovers involvement of pathways related to neurodegeneration and drug metabolism.; Mol Genet Metab, 143: 108596 |
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GSE273794 |
| Badesso, Sara et al. (2022) Docosahexaenoic Acid Ameliorates Contextual Fear Memory Deficits in the Tg2576 Alzheimer's Disease Mouse Model: Cellular and Molecular Correlates.; Pharmaceutics, 15: [no pages] |
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GSE217430 |
| Badesso, Sara et al. (2025) Loss of PLA2G4E compromises synaptic structure and cognitive outcomes in mice.; Life Sci Alliance, 8: [no pages] |
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GSE259324 |
| Badrinath, Soumya et al. (2022) A vaccine targeting resistant tumours by dual T cell plus NK cell attack.; Nature, 606: 992-998 |
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GSE181997.1 |
| Badve, Sunil et al. (2012) Molecular analysis of thymoma.; PLoS One, 7: e42669 |
|
GSE29695 |
| Bae, Dongsoon et al. (2009) Bypass of hexavalent chromium-induced growth arrest by a protein tyrosine phosphatase inhibitor: enhanced survival and mutagenesis.; Mutat Res, 660: 40-6 |
|
GSE12205 |
| Bae, Eunnyung et al. (2022) Integrin α3β1 promotes vessel formation of glioblastoma-associated endothelial cells through calcium-mediated macropinocytosis and lysosomal exocytosis.; Nat Commun, 13: 4268 |
|
GSE137900 GSE137901 |
| Bae, Han-Sol et al. (2017) An HDAC Inhibitor, Entinostat/MS-275, Partially Prevents Delayed Cranial Suture Closure in Heterozygous Runx2 Null Mice.; J Bone Miner Res, 32: 951-961 |
|
GSE87608 |
| Bae, Jung Hyun et al. (2022) Gatekeeping role ofNf2/Merlin in vascular tip EC induction through suppression of VEGFR2 internalization.; Sci Adv, 8: eabn2611 |
|
GSE186189 |
| Bae, Mihyun et al. (2021) SLC6A20 transporter: a novel regulator of brain glycine homeostasis and NMDAR function.; EMBO Mol Med, 13: e12632 |
|
GSE119236 |
| Bae-Gartz, Inga et al. (2019) Maternal Obesity Alters Neurotrophin-Associated MAPK Signaling in the Hypothalamus of Male Mouse Offspring.; Front Neurosci, 13: 962 |
|
GSE135830 |
| Baek, Jean-Ha et al. (2015) Expression of progerin in aging mouse brains reveals structural nuclear abnormalities without detectible significant alterations in gene expression, hippocampal stem cells or behavior.; Hum Mol Genet, 24: 1305-21 |
|
GSE52565 |
| Baek, Mina et al. (2021) The BET inhibitor attenuates the inflammatory response and cell migration in human microglial HMC3 cell line.; Sci Rep, 11: 8828 |
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GSE155408 |
| Baek, Myungin et al. (2019) Molecular Logic of Spinocerebellar Tract Neuron Diversity and Connectivity.; Cell Rep, 27: 2620-2635.e4 |
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GSE129948 |
| Baena, Esther et al. (2013) ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients.; Genes Dev, 27: 683-98 |
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GSE39353 GSE39354 GSE39355 |
| Baens, Mathijs et al. (2014) MALT1 auto-proteolysis is essential for NF-?B-dependent gene transcription in activated lymphocytes.; PLoS One, 9: e103774 |
|
GSE52934 |
| Baer, Claudia et al. (2004) Profiling and functional annotation of mRNA gene expression in pediatric rhabdomyosarcoma and Ewing's sarcoma.; Int J Cancer, 110: 687-94 |
|
GSE967 |
| Bagadia, Prachi et al. (2019) An Nfil3-Zeb2-Id2 pathway imposes Irf8 enhancer switching during cDC1 development.; Nat Immunol, 20: 1174-1185 |
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GSE123796 GSE123797 GSE123798 GSE123799 |
| Bagamasbad, Pia D et al. (2019) Coordinated transcriptional regulation by thyroid hormone and glucocorticoid interaction in adult mouse hippocampus-derived neuronal cells.; PLoS One, 14: e0220378 |
|
GSE132423 |
| Baglietto-Vargas, David et al. (2021) Generation of a humanized Aβ expressing mouse demonstrating aspects of Alzheimer's disease-like pathology.; Nat Commun, 12: 2421 |
|
GSE116199 |
| Bagot, Rosemary C et al. (2016) Circuit-wide Transcriptional Profiling Reveals Brain Region-Specific Gene Networks Regulating Depression Susceptibility.; Neuron, 90: 969-83 |
|
GSE72343 |
| Bagot, Rosemary C et al. (2017) Ketamine and Imipramine Reverse Transcriptional Signatures of Susceptibility and Induce Resilience-Specific Gene Expression Profiles.; Biol Psychiatry, 81: 285-295 |
|
GSE81672 |
| Bagó, Juli R et al. (2017) Tumor-homing cytotoxic human induced neural stem cells for cancer therapy.; Sci Transl Med, 9: [no pages] |
|
GSE92839 |
| Bahadori, Kasra et al. (2024) Inflammatory Gene Expression in Livers Undergoing Ex Situ Normothermic Perfusion Is Attenuated by Leukocyte Removal From the Perfusate.; Transplantation, [no vol.]: [no pages] |
|
GSE245976 |
| Bahia, Ravinder K et al. (2023) Epigenetic and molecular coordination between HDAC2 and SMAD3-SKI regulates essential brain tumour stem cell characteristics.; Nat Commun, 14: 5051 |
|
GSE214721 |
| Bahn, Young Jae et al. (2023) CDK4-E2F3 signals enhance oxidative skeletal muscle fiber numbers and function to affect myogenesis and metabolism.; J Clin Invest, 133: [no pages] |
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GSE101820 |
| Bahr, Timothy M et al. (2013) Peripheral blood mononuclear cell gene expression in chronic obstructive pulmonary disease.; Am J Respir Cell Mol Biol, [no vol.]: [no pages] |
|
GSE42057 |
| Bahreini, Amir et al. (2017) Mutation site and context dependent effects of ESR1 mutation in genome-edited breast cancer cell models.; Breast Cancer Res, 19: 60 |
|
GSE89888 |
| Bai, Bing et al. (2020) Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer's Disease Progression.; Neuron, 105: 975-991.e7 |
|
GSE140286 |
| Bai, Guangyang et al. (2025) Hexokinase 2 promotes ISGylation of Acyl-CoA synthetase long-chain family member 4 in sepsis-induced microglia cells.; J Lipid Res, 66: 100776 |
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GSE280721.2 GSE280721.1 |
| Bai, Jianwu et al. (2015) Phenotypic responses of differentiated asthmatic human airway epithelial cultures to rhinovirus.; PLoS One, 10: e0118286 |
|
GSE61141 |
| Bai, Longchuan et al. (2017) Targeted Degradation of BET Proteins in Triple-Negative Breast Cancer.; Cancer Res, 77: 2476-2487 |
|
GSE95375 |
| Bai, Mingliang et al. (2020) Critical regulation of a NDIME/MEF2C axis in embryonic stem cell neural differentiation and autism.; EMBO Rep, 21: e50283 |
|
GSE143606 |
| Bai, Xupeng et al. (2024) METTL14 suppresses the expression of YAP1 and the stemness of triple-negative breast cancer.; J Exp Clin Cancer Res, 43: 307 |
|
GSE245282 |
| Bai, Yang et al. (2023) Disulfiram blocks inflammatory TLR4 signaling by targeting MD-2.; Proc Natl Acad Sci U S A, 120: e2306399120 |
|
GSE237028 |
| Bai, Yuchen et al. (2023) YBX1 integration of oncogenic PI3K/mTOR signalling regulates the fitness of malignant epithelial cells.; Nat Commun, 14: 1591 |
|
GSE226355 |
| Baier, Paul C et al. (2014) Mice lacking the circadian modulators SHARP1 and SHARP2 display altered sleep and mixed state endophenotypes of psychiatric disorders.; PLoS One, 9: e110310 |
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GSE59941 |
| Bail, Kathrin et al. (2017) Differential effects of FTY720 on the B cell compartment in a mouse model of multiple sclerosis.; J Neuroinflammation, 14: 148 |
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GSE94636 GSE101753 |
| Bailey, Shannon T et al. (2014) NF-κB activation-induced anti-apoptosis renders HER2-positive cells drug resistant and accelerates tumor growth.; Mol Cancer Res, 12: 408-420 |
|
GSE52707 |
| Baines, Katherine J et al. (2014) Sputum gene expression signature of 6 biomarkers discriminates asthma inflammatory phenotypes.; J Allergy Clin Immunol, 133: 997-1007 |
|
GSE45111 |
| Baird, Thomas D et al. (2014) Selective mRNA translation during eIF2 phosphorylation induces expression of IBTK?.; Mol Biol Cell, 25: 1686-97 |
|
GSE54581 |