List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Athippozhy, Antony et al. (2011) Differential gene expression in liver and small intestine from lactating rats compared to age-matched virgin controls detects increased mRNA of cholesterol biosynthetic genes.; BMC Genomics, 12: 95 |
|
GSE19175 |
| Athota, Pranavi et al. (2023) Novel RNA-Seq Signatures Post-Methamphetamine and Oxycodone Use in a Model of HIV-Associated Neurocognitive Disorders.; Viruses, 15: [no pages] |
|
GSE236466 |
| Athwal, Harleen K et al. (2019) Sox10 Regulates Plasticity of Epithelial Progenitors toward Secretory Units of Exocrine Glands.; Stem Cell Reports, 12: 366-380 |
|
GSE123341 |
| Attilio, Peter J et al. (2021) Transcriptomic Analysis of Mouse Brain After Traumatic Brain Injury Reveals That the Angiotensin Receptor Blocker Candesartan Acts Through Novel Pathways.; Front Neurosci, 15: 636259 |
|
GSE163415 |
| Attoff, Kristina et al. (2017) Whole genome microarray analysis of neural progenitor C17.2 cells during differentiation and validation of 30 neural mRNA biomarkers for estimation of developmental neurotoxicity.; PLoS One, 12: e0190066 |
|
GSE97337 |
| Attwood, Benjamin K et al. (2011) Neuropsin cleaves EphB2 in the amygdala to control anxiety.; Nature, 473: 372-5 |
|
GSE27088 |
| Atwood, Ann et al. (2011) Cell-autonomous circadian clock of hepatocytes drives rhythms in transcription and polyamine synthesis.; Proc Natl Acad Sci U S A, 108: 18560-5 |
|
GSE31049 |
| Au, Kin Fai et al. (2010) Detection of splice junctions from paired-end RNA-seq data by SpliceMap.; Nucleic Acids Res, 38: 4570-8 |
|
GSE19166 |
| Au, Ngan Pan Bennett et al. (2022) Clinically relevant small-molecule promotes nerve repair and visual function recovery.; NPJ Regen Med, 7: 50 |
|
GSE200112 |
| Au, Ngan Pan Bennett et al. (2023) Genome-wide study reveals novel roles for formin-2 in axon regeneration as a microtubule dynamics regulator and therapeutic target for nerve repair.; Neuron, 111: 3970-3987.e8 |
|
GSE243896 |
| Au, Ngan Pan Bennett et al. (2024) Low-dose ionizing radiation promotes motor recovery and brain rewiring by resolving inflammatory response after brain injury and stroke.; Brain Behav Immun, 115: 43-63 |
|
GSE244016 |
| Au, Sam H et al. (2013) Cellular bias on the microscale: probing the effects of digital microfluidic actuation on mammalian cell health, fitness and phenotype.; Integr Biol (Camb), 5: 1014-25 |
|
GSE43507 |
| Aubert, Pamela et al. (2012) Homeostatic tissue responses in skin biopsies from NOMID patients with constitutive overproduction of IL-1?.; PLoS One, 7: e49408 |
|
GSE27864 |
| Aubrey, Brandon J et al. (2018) Mutant TRP53 exerts a target gene-selective dominant-negative effect to drive tumor development.; Genes Dev, 32: 1420-1429 |
|
GSE111950 |
| Aubrey, Brandon J et al. (2022) IKAROS and MENIN coordinate therapeutically actionable leukemogenic gene expression in MLL-r acute myeloid leukemia.; Nat Cancer, 3: 595-613 |
|
GSE168462 |
| Aubé, Fabien et al. (2024) Metabolism-dependent secondary effect of anti-MAPK cancer therapy on DNA repair.; NAR Cancer, 6: zcae019 |
|
GSE232709 GSE233121 GSE233122 GSE233120 GSE232604 GSE232551 |
| Auclair, Ghislain et al. (2014) Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse.; Genome Biol, 15: 545 |
|
GSE60334 |
| Audette, Dylan S et al. (2016) Prox1 and fibroblast growth factor receptors form a novel regulatory loop controlling lens fiber differentiation and gene expression.; Development, 143: 318-28 |
|
GSE69940 |
| Aue, Georg et al. (2018) Activation of Th1 Immunity within the Tumor Microenvironment Is Associated with Clinical Response to Lenalidomide in Chronic Lymphocytic Leukemia.; J Immunol, 201: 1967-1974 |
|
GSE112953 |
| Auffray, Cedric et al. (2007) Monitoring of blood vessels and tissues by a population of monocytes with patrolling behavior.; Science, 317: 666-70 |
|
GSE8294 |
| Augello, Michael A et al. (2013) Convergence of oncogenic and hormone receptor pathways promotes metastatic phenotypes.; J Clin Invest, 123: 493-508 |
|
GSE40794 |
| Augustin, Emma et al. (2025) Hippocampal Astrocyte Morphology Follows an Unexpected Trajectory With Age in a Transgenic Rodent Model of Tauopathy.; Glia, 73: 1502-1519 |
|
GSE246774 GSE264248 GSE246775 |
| Augustine, Christina K et al. (2010) Gene expression signatures as a guide to treatment strategies for in-transit metastatic melanoma.; Mol Cancer Ther, 9: 779-90 |
|
GSE10916 GSE19293 GSE10282 |
| Aukema, Sietse M et al. (2014) Biological characterization of adult MYC-translocation-positive mature B-cell lymphomas other than molecular Burkitt lymphoma.; Haematologica, 99: 726-35 |
|
GSE44164 |
| Auletta, Beatrice et al. (2025) Tissue-engineered neuromuscular organoids.; Commun Biol, 8: 1074 |
|
GSE226477 |
| Auman, James Todd et al. (2008) Celecoxib pre-treatment in human colorectal adenocarcinoma patients is associated with gene expression alterations suggestive of diminished cellular proliferation.; Eur J Cancer, 44: 1754-60 |
|
GSE11237 |
| Aupperlee, Mark D et al. (2015) Puberty-specific promotion of mammary tumorigenesis by a high animal fat diet.; Breast Cancer Res, 17: 138 |
|
GSE73983 |
| Ausejo-Mauleon, Iker et al. (2023) TIM-3 blockade in diffuse intrinsic pontine glioma models promotes tumor regression and antitumor immune memory.; Cancer Cell, 41: 1911-1926.e8 |
|
GSE223859 |
| Austah, Obadah N et al. (2022) Trigeminal neurons control immune-bone cell interaction and metabolism in apical periodontitis.; Cell Mol Life Sci, 79: 330 |
|
GSE198091 |
| Autry, Anita E et al. (2021) Urocortin-3neurons in the mouse perifornical area promote infant-directed neglect and aggression.; Elife, 10: [no pages] |
|
GSE161507 |
| Autry, Robert J et al. (2020) Integrative genomic analyses reveal mechanisms of glucocorticoid resistance in acute lymphoblastic leukemia.; Nat Cancer, 1: 329-344 |
|
GSE115384 |
| Auvergne, Romane M et al. (2013) Transcriptional differences between normal and glioma-derived glial progenitor cells identify a core set of dysregulated genes.; Cell Rep, 3: 2127-41 |
|
GSE29796 |
| Auzmendi-Iriarte, Jaione et al. (2022) Chaperone-Mediated Autophagy Controls Proteomic and Transcriptomic Pathways to Maintain Glioma Stem Cell Activity.; Cancer Res, 82: 1283-1297 |
|
GSE181556 |
| Avalle, Lidia et al. (2017) MicroRNAs-143 and -145 induce epithelial to mesenchymal transition and modulate the expression of junction proteins.; Cell Death Differ, 24: 1750-1760 |
|
GSE98689 |
| Avasarala, Jagannadha R et al. (2008) Microarray analysis in B cells among siblings with/without MS - role for transcription factor TCF2.; BMC Med Genomics, 1: 2 |
|
GSE10064 |
| Avery-Kiejda, Kelly A et al. (2011) P53 in human melanoma fails to regulate target genes associated with apoptosis and the cell cycle and may contribute to proliferation.; BMC Cancer, 11: 203 |
|
GSE29361 |
| Avey, Denis et al. (2018) Single-Cell RNA-Seq Uncovers a Robust Transcriptional Response to Morphine by Glia.; Cell Rep, 24: 3619-3629.e4 |
|
GSE118918 |
| Avila-Martin, Gerardo et al. (2017) Treatment with albumin-hydroxyoleic acid complex restores sensorimotor function in rats with spinal cord injury: Efficacy and gene expression regulation.; PLoS One, 12: e0189151 |
|
GSE104317 |
| Aviram, Rona et al. (2021) Ultradian rhythms of AKT phosphorylation and gene expression emerge in the absence of the circadian clock components Per1 and Per2.; PLoS Biol, 19: e3001492 |
|
GSE171975 |
| Avraham, Oshri et al. (2022) Analysis of neuronal injury transcriptional response identifies CTCF and YY1 as co-operating factors regulating axon regeneration.; Front Mol Neurosci, 15: 967472 |
|
GSE138480 |
| Avraham, Roi et al. (2015) Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses.; Cell, 162: 1309-21 |
|
GSE65530 |
| Avraham, Roy et al. (2023) Antiviral activity of glucosylceramide synthase inhibitors in alphavirus infection of the central nervous system.; Brain Commun, 5: fcad086 |
|
GSE171912 |
| Avrampou, Kleopatra et al. (2019) RGS4 Maintains Chronic Pain Symptoms in Rodent Models.; J Neurosci, 39: 8291-8304 |
|
GSE138024 |
| Avvakumov, Nikita et al. (2012) Conserved molecular interactions within the HBO1 acetyltransferase complexes regulate cell proliferation.; Mol Cell Biol, 32: 689-703 |
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GSE33220.1 GSE33220.3 |
| Awad, Dominik et al. (2024) Adipose Triglyceride Lipase Is a Therapeutic Target in Advanced Prostate Cancer That Promotes Metabolic Plasticity.; Cancer Res, 84: 703-724 |
|
GSE243159 |
| Awad, Hamdy et al. (2018) MiR-155 deletion reduces ischemia-induced paralysis in an aortic aneurysm repair mouse model: Utility of immunohistochemistry and histopathology in understanding etiology of spinal cord paralysis.; Ann Diagn Pathol, 36: 12-20 |
|
GSE74680 |
| Awano, Hiroyuki et al. (2015) Restoration of Functional Glycosylation of ?-Dystroglycan in FKRP Mutant Mice Is Associated with Muscle Regeneration.; Am J Pathol, 185: 2025-37 |
|
GSE67032 |
| Axisa, Pierre-Paul et al. (2022) A multiple sclerosis-protective coding variant reveals an essential role for HDAC7 in regulatory T cells.; Sci Transl Med, 14: eabl3651 |
|
GSE215817 |
| Ayari, Hanène et al. (2013) Identification of two genes potentially associated in iron-heme homeostasis in human carotid plaque using microarray analysis.; J Biosci, 38: 311-5 |
|
GSE43292 |
| Ayash, Sarah et al. (2023) Fear circuit-based neurobehavioral signatures mirror resilience to chronic social stress in mouse.; Proc Natl Acad Sci U S A, 120: e2205576120 |
|
GSE161726 |
| Ayata, Pinar et al. (2025) Lymphoid gene expression supports neuroprotective microglia function.; Nature, [no vol.]: [no pages] |
|
GSE296769 |
| Aydin, Begüm et al. (2019) Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.; Nat Neurosci, 22: 897-908 |
|
GSE114173 |
| Aydin, Dorothee et al. (2011) Comparative transcriptome profiling of amyloid precursor protein family members in the adult cortex.; BMC Genomics, 12: 160 |
|
GSE25926 |
| Aydin, Selcan et al. (2025) Systems genetics reveals the influence of expression QTLs in mouse embryonic stem cells on transcriptional variation later in differentiated neural progenitor cells.; G3 (Bethesda), 15: [no pages] |
|
GSE285231 |
| Ayerra, Leyre et al. (2024) Nigrostriatal degeneration determines dynamics of glial inflammatory and phagocytic activity.; J Neuroinflammation, 21: 92 |
|
GSE244652 |
| Ayers, Mark et al. (2007) Discovery and validation of biomarkers that respond to treatment with brivanib alaninate, a small-molecule VEGFR-2/FGFR-1 antagonist.; Cancer Res, 67: 6899-906 |
|
GSE7208 |
| Ayoub, Albert E et al. (2011) Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing.; Proc Natl Acad Sci U S A, 108: 14950-5 |
|
GSE30765 |
| Ayoub, Albert E et al. (2019) Coordination of Neuron Production in Mouse and Human Cerebral Cortex by the Homolog of Drosophila Mastermind Protein.; Brain Behav Evol, 93: 152-165 |
|
GSE76491.2 GSE76491.1 |
| Ayrault, Olivier et al. (2010) Atoh1 inhibits neuronal differentiation and collaborates with Gli1 to generate medulloblastoma-initiating cells.; Cancer Res, 70: 5618-27 |
|
GSE19684 |
| Aytes, Alvaro et al. (2013) ETV4 promotes metastasis in response to activation of PI3-kinase and Ras signaling in a mouse model of advanced prostate cancer.; Proc Natl Acad Sci U S A, 110: E3506-15 |
|
GSE47697 |
| Aytes, Alvaro et al. (2014) Cross-Species Regulatory Network Analysis Identifies a Synergistic Interaction between FOXM1 and CENPF that Drives Prostate Cancer Malignancy.; Cancer Cell, 25: 638-51 |
|
GSE53202 |
| Ayuso-García, Paula et al. (2024) Neddylation orchestrates the complex transcriptional and posttranscriptional program that drives Schwann cell myelination.; Sci Adv, 10: eadm7600 |
|
GSE241269 |
| Azatyan, Ani et al. (2021) Circular RNAs in Hedgehog Signaling Activation and Hedgehog-Mediated Medulloblastoma Tumors.; Cancers (Basel), 13: [no pages] |
|
GSE183194.1 |
| Azeem, Sayma et al. (2025) CMTR1-catalyzed 2'-O-methylation promotes NMDA receptor signaling, long-term potentiation and memory.; Prog Neurobiol, 251: 102802 |
|
GSE279686 |
| Azevedo, Hatylas et al. (2018) Temporal analysis of hippocampal CA3 gene coexpression networks in a rat model of febrile seizures.; Dis Model Mech, 11: [no pages] |
|
GSE84289 |
| Azevedo-Pereira, Ricardo L et al. (2023) Decoding the molecular crosstalk between grafted stem cells and the stroke-injured brain.; Cell Rep, 42: 112353 |
|
GSE150710.2 GSE150710.1 |
| Azhar, Muhammad et al. (2023) The arginine methyltransferase Prmt1 coordinates the germline arginine methylome essential for spermatogonial homeostasis and male fertility.; Nucleic Acids Res, 51: 10428-10450 |
|
GSE227857 |
| Azim, Kasum et al. (2015) Transcriptional Hallmarks of Heterogeneous Neural Stem Cell Niches of the Subventricular Zone.; Stem Cells, 33: 2232-42 |
|
GSE60905 |
| Aziz, Nadine M et al. (2018) Lifespan analysis of brain development, gene expression and behavioral phenotypes in the Ts1Cje, Ts65Dn and Dp(16)1/Yey mouse models of Down syndrome.; Dis Model Mech, 11: [no pages] |
|
GSE99135 |
| Azizan, Elena A B et al. (2013) Somatic mutations in ATP1A1 and CACNA1D underlie a common subtype of adrenal hypertension.; Nat Genet, 45: 1055-60 |
|
GSE48303 |
| Azizi, Gholamreza et al. (2025) GM-CSF production by immune cells in steady state and autoimmune neuroinflammation mapped using fate reporting mice.; Front Immunol, 16: 1617074 |
|
GSE305413 |
| Azotla-Vilchis, Cuauhtli N et al. (2021) Transcriptome Analysis Reveals Altered Inflammatory Pathway in an Inducible Glial Cell Model of Myotonic Dystrophy Type 1.; Biomolecules, 11: [no pages] |
|
GSE164057 |
| Azuma, Noriyuki et al. (2023) Integrator complex subunit 15 controls mRNA splicing and is critical for eye development.; Hum Mol Genet, 32: 2032-2045 |
|
GSE186331 |
| Azzarelli, Roberta et al. (2017) Multi-site Neurogenin3 Phosphorylation Controls Pancreatic Endocrine Differentiation.; Dev Cell, 41: 274-286.e5 |
|
GSE96707 |
| Azzolin, Luca et al. (2014) YAP/TAZ incorporation in the ?-catenin destruction complex orchestrates the Wnt response.; Cell, 158: 157-70 |
|
GSE55622 |
| Azzopardi, Stephanie A et al. (2024) Role of iRhom2 in Olfaction: Implications for Odorant Receptor Regulation and Activity-Dependent Adaptation.; Int J Mol Sci, 25: [no pages] |
|
GSE268171 |
| Baako, Ann K et al. (2025) MODELING TISSUE-RESIDENT MACROPHAGE DEVELOPMENT FROM MOUSE PLURIPOTENT STEM CELLS.; bioRxiv, [no vol.]: [no pages] |
|
GSE296070 |
| Baba, Rina et al. (2021) LSD1 enzyme inhibitor TAK-418 unlocks aberrant epigenetic machinery and improves autism symptoms in neurodevelopmental disorder models.; Sci Adv, 7: [no pages] |
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GSE165660.1 GSE165660.2 |
| Baba, T et al. (2009) Epigenetic regulation of CD133 and tumorigenicity of CD133+ ovarian cancer cells.; Oncogene, 28: 209-18 |
|
GSE25428 |
| Babaniyi, Olusegun et al. (2023) Modelling acute glucocorticoid transcriptome response in human embryonic stem cell derived neural cultures.; Stem Cell Res, 69: 103086 |
|
GSE205890 |
| Babey, Muriel E et al. (2024) A maternal brain hormone that builds bone.; Nature, 632: 357-365 |
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GSE248881 GSE248880 GSE248879 |
| Babikian, Talin et al. (2010) Molecular and physiological responses to juvenile traumatic brain injury: focus on growth and metabolism.; Dev Neurosci, 32: 431-41 |
|
GSE2871 |
| Babos, Kimberley N et al. (2019) Mitigating Antagonism between Transcription and Proliferation Allows Near-Deterministic Cellular Reprogramming.; Cell Stem Cell, 25: 486-500.e9 |
|
GSE134730 GSE134728 |
| Ávila-Mendoza, José et al. (2020) Molecular Mechanisms for Krüppel-Like Factor 13 Actions in Hippocampal Neurons.; Mol Neurobiol, [no vol.]: [no pages] |
|
GSE148384 |