List of all 17,685 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Baitsch, Lukas et al. (2011) Exhaustion of tumor-specific CD8? T cells in metastases from melanoma patients.; J Clin Invest, 121: 2350-60 |
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GSE24536 |
| Baizabal, José-Manuel et al. (2018) The Epigenetic State of PRDM16-Regulated Enhancers in Radial Glia Controls Cortical Neuron Position.; Neuron, 98: 945-962.e8 |
|
GSE111660 |
| Bajikar, Sameer S et al. (2025) Acute MeCP2 loss in adult mice reveals transcriptional and chromatin changes that precede neurological dysfunction and inform pathogenesis.; Neuron, 113: 380-395.e8 |
|
GSE246119 |
| Bajo-Grañeras, Raquel et al. (2011) Apolipoprotein D alters the early transcriptional response to oxidative stress in the adult cerebellum.; J Neurochem, 117: 949-60 |
|
GSE28643 |
| Bajpai, Vivek K et al. (2017) Reprogramming Postnatal Human Epidermal Keratinocytes Toward Functional Neural Crest Fates.; Stem Cells, 35: 1402-1415 |
|
GSE72268 |
| Bakay, Marina et al. (2006) Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration.; Brain, 129: 996-1013 |
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GSE3307 |
| Baker, Brennan H et al. (2023) Sex-specific neurobehavioral and prefrontal cortex gene expression alterations following developmental acetaminophen exposure in mice.; Neurobiol Dis, 177: 105970 |
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GSE198424 |
| Baker, Bryan A et al. (2014) Ontology analysis of global gene expression differences of human bone marrow stromal cells cultured on 3D scaffolds or 2D films.; Biomaterials, 35: 6716-26 |
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GSE50744 |
| Baker, David J et al. (2015) Lysosomal and phagocytic activity is increased in astrocytes during disease progression in the SOD1 (G93A) mouse model of amyotrophic lateral sclerosis.; Front Cell Neurosci, 9: 410 |
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GSE69166 |
| Baker, Patrick E et al. (2006) Analysis of gene expression differences between utrophin/dystrophin-deficient vs mdx skeletal muscles reveals a specific upregulation of slow muscle genes in limb muscles.; Neurogenetics, 7: 81-91 |
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GSE1463 |
| Baker, Steven Andrew et al. (2013) An AT-hook domain in MeCP2 determines the clinical course of Rett syndrome and related disorders.; Cell, 152: 984-96 |
|
GSE42987 |
| Bakhashab, Sherin et al. (2014) Reference genes for expression studies in hypoxia and hyperglycemia models in human umbilical vein endothelial cells.; G3 (Bethesda), 4: 2159-65 |
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GSE46263 |
| Bakhashab, Sherin et al. (2016) Metformin improves the angiogenic potential of human CD34⁺ cells co-incident with downregulating CXCL10 and TIMP1 gene expression and increasing VEGFA under hyperglycemia and hypoxia within a therapeutic window for myocardial infarction.; Cardiovasc Diabetol, 15: 27 |
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GSE46262 |
| Bakiri, Latifa et al. (2024) Liver cancer development driven by the AP-1/c-Jun~Fra-2 dimer through c-Myc.; Proc Natl Acad Sci U S A, 121: e2404188121 |
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GSE261005 |
| Bakulski, Kelly M et al. (2020) Single-Cell Analysis of the Gene Expression Effects of Developmental Lead (Pb) Exposure on the Mouse Hippocampus.; Toxicol Sci, 176: 396-409 |
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GSE151723 |
| Balabanova, Silvia et al. (2014) The neuroendocrine phenotype of gastric myofibroblasts and its loss with cancer progression.; Carcinogenesis, [no vol.]: [no pages] |
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GSE44740 |
| Balacescu, Ovidiu et al. (2014) Gene expression profiling reveals activation of the FA/BRCA pathway in advanced squamous cervical cancer with intrinsic resistance and therapy failure.; BMC Cancer, 14: 246 |
|
GSE56363 |
| Balachandran, Vinod P et al. (2011) Imatinib potentiates antitumor T cell responses in gastrointestinal stromal tumor through the inhibition of Ido.; Nat Med, 17: 1094-100 |
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GSE30416 |
| Balagopal, Prabhakaran et al. (2006) Oxandrolone enhances skeletal muscle myosin synthesis and alters global gene expression profile in Duchenne muscular dystrophy.; Am J Physiol Endocrinol Metab, 290: E530-9 |
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GSE1764 |
| Balboni, Nicola et al. (2024) Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs).; Cell Mol Biol Lett, 29: 44 |
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GSE236054 |
| Bald, Tobias et al. (2014) Ultraviolet-radiation-induced inflammation promotes angiotropism and metastasis in melanoma.; Nature, 507: 109-13 |
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GSE51221 |
| Baldi, Alfonso et al. (2011) Apoptosis induced by piroxicam plus cisplatin combined treatment is triggered by p21 in mesothelioma.; PLoS One, 6: e23569 |
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GSE22445 |
| Baldo, Guilherme et al. (2011) Pathogenesis of aortic dilatation in mucopolysaccharidosis VII mice may involve complement activation.; Mol Genet Metab, 104: 608-19 |
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GSE30657 |
| Baldwin, Helen M et al. (2013) Microarray analyses demonstrate the involvement of type I interferons in psoriasiform pathology development in D6-deficient mice.; J Biol Chem, 288: 36473-83 |
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GSE46889 |
| Baleriola, Jimena et al. (2014) Axonally synthesized ATF4 transmits a neurodegenerative signal across brain regions.; Cell, 158: 1159-1172 |
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GSE70860 |
| Balgobind, Brian V et al. (2011) Evaluation of gene expression signatures predictive of cytogenetic and molecular subtypes of pediatric acute myeloid leukemia.; Haematologica, 96: 221-30 |
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GSE17855 |
| Baligand, Celine et al. (2015) Transcriptional Pathways Associated with Skeletal Muscle Changes after Spinal Cord Injury and Treadmill Locomotor Training.; Biomed Res Int, 2015: 387090 |
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GSE45550 |
| Balivada, Sivasai et al. (2017) Microarray analysis of aging-associated immune system alterations in the rostral ventrolateral medulla of F344 rats.; Physiol Genomics, 49: 400-415 |
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GSE90956 |
| Balkhi, Mumtaz Yaseen et al. (2012) IKKα-mediated signaling circuitry regulates early B lymphopoiesis during hematopoiesis.; Blood, 119: 5467-77 |
|
GSE30363 |
| Balko, Justin M et al. (2006) Gene expression patterns that predict sensitivity to epidermal growth factor receptor tyrosine kinase inhibitors in lung cancer cell lines and human lung tumors.; BMC Genomics, 7: 289 |
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GSE31625 |
| Ballard, Philip L et al. (2010) Regulated gene expression in cultured type II cells of adult human lung.; Am J Physiol Lung Cell Mol Physiol, 299: L36-50 |
|
GSE19699 |
| Ballegeer, Marlies et al. (2018) Glucocorticoid receptor dimers control intestinal STAT1 and TNF-induced inflammation in mice.; J Clin Invest, 128: 3265-3279 |
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GSE113691.1 GSE113691.2 |
| Balliu, Brunilda et al. (2021) An integrated approach to identify environmental modulators of genetic risk factors for complex traits.; Am J Hum Genet, 108: 1866-1879 |
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GSE179347.2 |
| Balnis, Joseph et al. (2022) Deaccelerated Myogenesis and Autophagy in Genetically Induced Pulmonary Emphysema.; Am J Respir Cell Mol Biol, 66: 623-637 |
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GSE180261 |
| Balow, James E et al. (2013) Microarray-based gene expression profiling in patients with cryopyrin-associated periodic syndromes defines a disease-related signature and IL-1-responsive transcripts.; Ann Rheum Dis, 72: 1064-70 |
|
GSE43553 |
| Baltanás, Fernando C et al. (2021) Functional Specificity of the Members of the Sos Family of Ras-GEF Activators: Novel Role of Sos2 in Control of Epidermal Stem Cell Homeostasis.; Cancers (Basel), 13: [no pages] |
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GSE166020 |
| Ban, Tatsuma et al. (2016) Lyn Kinase Suppresses the Transcriptional Activity of IRF5 in the TLR-MyD88 Pathway to Restrain the Development of Autoimmunity.; Immunity, 45: 319-32 |
|
GSE63014 |
| Banach-Petrosky, Whitney et al. (2007) Prolonged exposure to reduced levels of androgen accelerates prostate cancer progression in Nkx3.1; Pten mutant mice.; Cancer Res, 67: 9089-96 |
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GSE15943 |
| Bancerek, Joanna et al. (2013) CDK8 kinase phosphorylates transcription factor STAT1 to selectively regulate the interferon response.; Immunity, 38: 250-62 |
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GSE40728 |
| Banchereau, Romain et al. (2012) Host immune transcriptional profiles reflect the variability in clinical disease manifestations in patients with Staphylococcus aureus infections.; PLoS One, 7: e34390 |
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GSE30119 |
| Bandino, Andrea et al. (2014) Deoxyhypusine synthase (DHPS) inhibitor GC7 induces p21/Rb-mediated inhibition of tumor cell growth and DHPS expression correlates with poor prognosis in neuroblastoma patients.; Cell Oncol (Dordr), 37: 387-98 |
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GSE16478 GSE16477 GSE16481 |
| Bando, Silvia Y et al. (2011) Hippocampal CA3 transcriptome signature correlates with initial precipitating injury in refractory mesial temporal lobe epilepsy.; PLoS One, 6: e26268 |
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GSE28674 |
| Bando, Silvia Y et al. (2023) Blood leukocyte transcriptional modules and differentially expressed genes associated with disease severity and age in COVID-19 patients.; Sci Rep, 13: 898 |
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GSE193022 |
| Bando, Silvia Yumi et al. (2021) Hippocampal CA3 transcriptional modules associated with granule cell alterations and cognitive impairment in refractory mesial temporal lobe epilepsy patients.; Sci Rep, 11: 10257 |
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GSE163296 |
| Bandopadhayay, Pratiti et al. (2014) BET bromodomain inhibition of MYC-amplified medulloblastoma.; Clin Cancer Res, 20: 912-25 |
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GSE51020 |
| Bandopadhayay, Pratiti et al. (2019) Neuronal differentiation and cell-cycle programs mediate response to BET-bromodomain inhibition in MYC-driven medulloblastoma.; Nat Commun, 10: 2400 |
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GSE122404 |
| Bandukwala, Hozefa S et al. (2012) Selective inhibition of CD4+ T-cell cytokine production and autoimmunity by BET protein and c-Myc inhibitors.; Proc Natl Acad Sci U S A, 109: 14532-7 |
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GSE39886 |
| Banerjee, Subhashis et al. (2021) Adropin correlates with aging-related neuropathology in humans and improves cognitive function in aging mice.; NPJ Aging Mech Dis, 7: 23 |
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GSE179088 |
| Banerji, Christopher R S et al. (2017) PAX7 target genes are globally repressed in facioscapulohumeral muscular dystrophy skeletal muscle.; Nat Commun, 8: 2152 |
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GSE77478 |
| Banfi, Federica et al. (2021) SETBP1 accumulation induces P53 inhibition and genotoxic stress in neural progenitors underlying neurodegeneration in Schinzel-Giedion syndrome.; Nat Commun, 12: 4050 |
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GSE150810 |
| Bang, Jihye et al. (2013) Biphasic functional regulation in hippocampus of rat with chronic cerebral hypoperfusion induced by permanent occlusion of bilateral common carotid artery.; PLoS One, 8: e70093 |
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GSE44289 |
| Bang, Sangsu et al. (2024) Satellite glial GPR37L1 and its ligand maresin 1 regulate potassium channel signaling and pain homeostasis.; J Clin Invest, 134: [no pages] |
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GSE260669 |
| Bangs, Sarah C et al. (2009) Human CD4+ memory T cells are preferential targets for bystander activation and apoptosis.; J Immunol, 182: 1962-71 |
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GSE13738 |
| Bankov, Katrin et al. (2019) Fibroblasts in Nodular Sclerosing Classical Hodgkin Lymphoma Are Defined by a Specific Phenotype and Protect Tumor Cells from Brentuximab-Vedotin Induced Injury.; Cancers (Basel), 11: [no pages] |
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GSE153517 |
| Banks, Charles A S et al. (2014) Controlling for gene expression changes in transcription factor protein networks.; Mol Cell Proteomics, 13: 1510-22 |
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GSE57027 |
| Bannier-Hélaouët, Marie et al. (2021) Exploring the human lacrimal gland using organoids and single-cell sequencing.; Cell Stem Cell, 28: 1221-1232.e7 |
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GSE164463 |
| Bannier-Hélaouët, Marie et al. (2024) Human conjunctiva organoids to study ocular surface homeostasis and disease.; Cell Stem Cell, 31: 227-243.e12 |
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GSE205926 |
| Banno, Tomohiro et al. (2005) Pathway-specific profiling identifies the NF-kappa B-dependent tumor necrosis factor alpha-regulated genes in epidermal keratinocytes.; J Biol Chem, 280: 18973-80 |
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GSE2489.2 |
| Bannon, Desmond I et al. (2009) Global gene expression in rat brain and liver after oral exposure to the explosive hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX).; Chem Res Toxicol, 22: 620-5 |
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GSE12196 |
| Bannon, Michael J et al. (2014) A molecular profile of cocaine abuse includes the differential expression of genes that regulate transcription, chromatin, and dopamine cell phenotype.; Neuropsychopharmacology, 39: 2191-9 |
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GSE54839 |
| Bao, Fei et al. (2007) Comparative gene expression analysis of a chronic myelogenous leukemia cell line resistant to cyclophosphamide using oligonucleotide arrays and response to tyrosine kinase inhibitors.; Leuk Res, 31: 1511-20 |
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GSE7114 |
| Bao, Jianqiang et al. (2016) UPF2-Dependent Nonsense-Mediated mRNA Decay Pathway Is Essential for Spermatogenesis by Selectively Eliminating Longer 3'UTR Transcripts.; PLoS Genet, 12: e1005863 |
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GSE55180 |
| Bao, Kehan et al. (2025) Hepatic PKA Mediates Liver and Pancreatic α-Cell Cross Talk.; Diabetes, 74: 885-897 |
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GSE268864.1 GSE268864.2 |
| Bao, Lisha et al. (2024) Maintenance of magnesium homeostasis by NUF2 promotes protein synthesis and anaplastic thyroid cancer progression.; Cell Death Dis, 15: 656 |
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GSE272374 |
| Bao, Rong et al. (2024) Neuromorphic electro-stimulation based on atomically thin semiconductor for damage-free inflammation inhibition.; Nat Commun, 15: 1327 |
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GSE253300 |
| Bao, Siqin et al. (2012) The germ cell determinant Blimp1 is not required for derivation of pluripotent stem cells.; Cell Stem Cell, 11: 110-7 |
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GSE35983 |
| Bao, Wangxiao et al. (2023) An integrated analysis of gut microbiota and the brain transcriptome reveals host-gut microbiota interactions following traumatic brain injury.; Brain Res, 1799: 148149 |
|
GSE205958 |
| Bao, Xichen et al. (2015) The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters.; Cell Res, 25: 80-92 |
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GSE57967 |
| Bao, Xinyue et al. (2025) Oxytocin receptor enhances adipocyte browning and energy metabolism in mice.; Exp Cell Res, 447: 114534 |
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GSE276520 |
| Bao, Xiuqin et al. (2021) Epigenetic inactivation of ERF reactivates γ-globin expression in β-thalassemia.; Am J Hum Genet, 108: 709-721 |
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GSE160601 |
| Bao, Ying-Na et al. (2014) Urokinase-type plasminogen activator receptor signaling is critical in nasopharyngeal carcinoma cell growth and metastasis.; Cell Cycle, 13: 1958-69 |
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GSE53819 |
| Bao, Zhao-Shi et al. (2014) RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas.; Genome Res, 24: 1765-73 |
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GSE48865 |
| Baptista, Liliana C et al. (2023) Multiomics profiling of the impact of an angiotensin (1-7)-expressing probiotic combined with exercise training in aged male rats.; J Appl Physiol (1985), 134: 1135-1153 |
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GSE213649 |
| Baptista, Maria Joao et al. (2012) Differential gene expression profile associated to apoptosis induced by dexamethasone in CLL cells according to IGHV/ZAP-70 status.; Clin Cancer Res, 18: 5924-33 |
|
GSE33135 |
| Baqai, Usman et al. (2023) Kinome profiling identifies MARK3 and STK10 as potential therapeutic targets in uveal melanoma.; J Biol Chem, 299: 105418 |
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GSE228090 |
| Bar-Nur, Ori et al. (2014) Small molecules facilitate rapid and synchronous iPSC generation.; Nat Methods, 11: 1170-6 |
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GSE57774 |
| Barahona, Rocio A et al. (2022) Cortical diurnal rhythms remain intact with microglial depletion.; Sci Rep, 12: 114 |
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GSE188989 |
| Barakat, Abdul Karim et al. (2020) Citalopram-induced pathways regulation and tentative treatment-outcome-predicting biomarkers in lymphoblastoid cell lines from depression patients.; Transl Psychiatry, 10: 210 |
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GSE149980 |
| Baranek, Thomas et al. (2012) Differential responses of immune cells to type I interferon contribute to host resistance to viral infection.; Cell Host Microbe, 12: 571-84 |
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GSE39555 GSE45365 GSE21491 |
| Barash, Hila et al. (2010) Accelerated carcinogenesis following liver regeneration is associated with chronic inflammation-induced double-strand DNA breaks.; Proc Natl Acad Sci U S A, 107: 2207-12 |
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GSE14539 |
| Barbagiovanni, Giulia et al. (2018) KMT2B Is Selectively Required for Neuronal Transdifferentiation, and Its Loss Exposes Dystonia Candidate Genes.; Cell Rep, 25: 988-1001 |
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GSE120441 |
| Barbato, Sara et al. (2017) MiR-211 is essential for adult cone photoreceptor maintenance and visual function.; Sci Rep, 7: 17004 |
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GSE106591 |
| Barber, Alicia J et al. (2024) Age, sex and Alzheimer's disease: a longitudinal study of 3xTg-AD mice reveals sex-specific disease trajectories and inflammatory responses mirrored in postmortem brains from Alzheimer's patients.; Alzheimers Res Ther, 16: 134 |
|
GSE254970 |
| Barbieri, Christopher E et al. (2006) Loss of p63 leads to increased cell migration and up-regulation of genes involved in invasion and metastasis.; Cancer Res, 66: 7589-97 |
|
GSE4975 |
| Barbieri, Eveline et al. (2014) Histone chaperone CHAF1A inhibits differentiation and promotes aggressive neuroblastoma.; Cancer Res, 74: 765-74 |
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GSE51978 |
| Barbieri, Isaia et al. (2010) Constitutively active Stat3 enhances neu-mediated migration and metastasis in mammary tumors via upregulation of Cten.; Cancer Res, 70: 2558-67 |
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GSE17182 |
| Barclay, Jane et al. (2007) Role of the cysteine protease cathepsin S in neuropathic hyperalgesia.; Pain, 130: 225-34 |
|
GSE2636 |
| Barclay, Johanna L et al. (2010) In vivo targeting of the growth hormone receptor (GHR) Box1 sequence demonstrates that the GHR does not signal exclusively through JAK2.; Mol Endocrinol, 24: 204-17 |
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GSE11396 |
| Barclay, Johanna L et al. (2012) Circadian desynchrony promotes metabolic disruption in a mouse model of shiftwork.; PLoS One, 7: e37150 |
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GSE33381 |
| Barco, Angel et al. (2005) Gene expression profiling of facilitated L-LTP in VP16-CREB mice reveals that BDNF is critical for the maintenance of LTP and its synaptic capture.; Neuron, 48: 123-37 |
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GSE3965 |
| Bard-Chapeau, Emilie A et al. (2012) Ecotopic viral integration site 1 (EVI1) regulates multiple cellular processes important for cancer and is a synergistic partner for FOS protein in invasive tumors.; Proc Natl Acad Sci U S A, 109: 2168-73 |
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GSE33724 GSE25212 |
| Bardella, Chiara et al. (2016) Expression of Idh1R132Hin the Murine Subventricular Zone Stem Cell Niche Recapitulates Features of Early Gliomagenesis.; Cancer Cell, 30: 578-594 |
|
GSE85080 |
| Barelli, Carlotta et al. (2025) Morphoregulatory ADD3 underlies glioblastoma growth and formation of tumor-tumor connections.; Life Sci Alliance, 8: [no pages] |
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GSE280761 |