List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Babu, Mohan et al. (2023) ApoA-I Nanotherapy Rescues Postischemic Vascular Maladaptation by Modulating Endothelial Cell and Macrophage Phenotypes in Type 2 Diabetic Mice.; Arterioscler Thromb Vasc Biol, 43: e46-e61 |
|
GSE197392 |
| Babu, Vishnu Suresh et al. (2022) Integrated Analysis of Cancer Tissue and Vitreous Humor from Retinoblastoma Eyes Reveals Unique Tumor-Specific Metabolic and Cellular Pathways in Advanced and Non-Advanced Tumors.; Cells, 11: [no pages] |
|
GSE208143 |
| Babygirija, Reji et al. (2026) Restriction of Individual Branched-Chain Amino Acids has Distinct Effects on the Development and Progression of Alzheimer's Disease in 3xTg Mice.; Adv Sci (Weinh), 13: e15220 |
|
GSE299928 |
| Baccarella, Alyssa et al. (2013) Toll-like receptor 7 mediates early innate immune responses to malaria.; Infect Immun, 81: 4431-42 |
|
GSE41496 |
| Baccouche, Basma et al. (2025) Activin A Prevents Hyperresponsiveness to Vascular Endothelial Growth Factor in Pathologic Blood Vessels by Perturbing the Trafficking of Activated Vascular Endothelial Growth Factor Receptor 2.; Am J Pathol, 195: 1736-1754 |
|
GSE291008 |
| Bacher, Ulrike et al. (2012) Multilineage dysplasia does not influence prognosis in CEBPA-mutated AML, supporting the WHO proposal to classify these patients as a unique entity.; Blood, 119: 4719-22 |
|
GSE33223 |
| Bachet, Jean-Baptiste et al. (2013) Gene expression patterns of hemizygous and heterozygous KIT mutations suggest distinct oncogenic pathways: a study in NIH3T3 cell lines and GIST samples.; PLoS One, 8: e61103 |
|
GSE33968 |
| Bachireddy, Pavan et al. (2014) Reversal of in situ T-cell exhaustion during effective human antileukemia responses to donor lymphocyte infusion.; Blood, 123: 1412-21 |
|
GSE49067 |
| Bachmann, Julie et al. (2011) Division of labor by dual feedback regulators controls JAK2/STAT5 signaling over broad ligand range.; Mol Syst Biol, 7: 516 |
|
GSE26151 |
| Bachmann, Radu et al. (2022) Akkermansia muciniphilaReduces Peritonitis and Improves Intestinal Tissue Wound Healing after a Colonic Transmural Defect by a MyD88-Dependent Mechanism.; Cells, 11: [no pages] |
|
GSE211506 |
| Bachtel, Nathaniel D et al. (2025) Intestinal mast cell-derived leukotrienes mediate the anaphylactic response to ingested antigens.; Science, 389: eadp0246 |
|
GSE293561 |
| Bachtiary, Barbara et al. (2006) Gene expression profiling in cervical cancer: an exploration of intratumor heterogeneity.; Clin Cancer Res, 12: 5632-40 |
|
GSE5787 |
| Bachy, Emmanuel et al. (2016) CD1d-restricted peripheral T cell lymphoma in mice and humans.; J Exp Med, 213: 841-57 |
|
GSE63264 |
| Backman, Stéphanie et al. (2014) Glucocorticoid-induced reversal of interleukin-1β-stimulated inflammatory gene expression in human oviductal cells.; PLoS One, 9: e97997 |
|
GSE54608 |
| Backus, Gillian S et al. (2010) Protective role of interleukin-10 in ozone-induced pulmonary inflammation.; Environ Health Perspect, 118: 1721-7 |
|
GSE25095 |
| Badat, Mohsin et al. (2023) Direct correction of haemoglobin E β-thalassaemia using base editors.; Nat Commun, 14: 2238 |
|
GSE206098 |
| Badea, Liviu et al. (2008) Combined gene expression analysis of whole-tissue and microdissected pancreatic ductal adenocarcinoma identifies genes specifically overexpressed in tumor epithelia.; Hepatogastroenterology, 55: 2016-27 |
|
GSE15471 |
| Badenetti, Lorenzo et al. (2024) Multi-omic analysis of a mucolipidosis II neuronal cell model uncovers involvement of pathways related to neurodegeneration and drug metabolism.; Mol Genet Metab, 143: 108596 |
|
GSE273794 |
| Badesso, Sara et al. (2022) Docosahexaenoic Acid Ameliorates Contextual Fear Memory Deficits in the Tg2576 Alzheimer's Disease Mouse Model: Cellular and Molecular Correlates.; Pharmaceutics, 15: [no pages] |
|
GSE217430 |
| Badesso, Sara et al. (2025) Loss of PLA2G4E compromises synaptic structure and cognitive outcomes in mice.; Life Sci Alliance, 8: [no pages] |
|
GSE259323 GSE259324 |
| Badic, Bogdan et al. (2019) Prognostic impact of cancer stem cell markersABCB1, NEO1andHIST1H2AEin colorectal cancer.; Am J Transl Res, 12: 5797-5807 |
|
GSE50114 |
| Badrinath, Soumya et al. (2022) A vaccine targeting resistant tumours by dual T cell plus NK cell attack.; Nature, 606: 992-998 |
|
GSE181997.1 |
| Badve, Sunil et al. (2012) Molecular analysis of thymoma.; PLoS One, 7: e42669 |
|
GSE29695 |
| Bae, Dongsoon et al. (2009) Bypass of hexavalent chromium-induced growth arrest by a protein tyrosine phosphatase inhibitor: enhanced survival and mutagenesis.; Mutat Res, 660: 40-6 |
|
GSE12205 |
| Bae, Eunnyung et al. (2022) Integrin α3β1 promotes vessel formation of glioblastoma-associated endothelial cells through calcium-mediated macropinocytosis and lysosomal exocytosis.; Nat Commun, 13: 4268 |
|
GSE137900 GSE137901 |
| Bae, Han-Sol et al. (2017) An HDAC Inhibitor, Entinostat/MS-275, Partially Prevents Delayed Cranial Suture Closure in Heterozygous Runx2 Null Mice.; J Bone Miner Res, 32: 951-961 |
|
GSE87608 |
| Bae, Jung Hyun et al. (2022) Gatekeeping role ofNf2/Merlin in vascular tip EC induction through suppression of VEGFR2 internalization.; Sci Adv, 8: eabn2611 |
|
GSE186189 |
| Bae, Mihyun et al. (2021) SLC6A20 transporter: a novel regulator of brain glycine homeostasis and NMDAR function.; EMBO Mol Med, 13: e12632 |
|
GSE119236 |
| Bae-Gartz, Inga et al. (2019) Maternal Obesity Alters Neurotrophin-Associated MAPK Signaling in the Hypothalamus of Male Mouse Offspring.; Front Neurosci, 13: 962 |
|
GSE135830 |
| Baek, Jean-Ha et al. (2015) Expression of progerin in aging mouse brains reveals structural nuclear abnormalities without detectible significant alterations in gene expression, hippocampal stem cells or behavior.; Hum Mol Genet, 24: 1305-21 |
|
GSE52565 |
| Baek, Mina et al. (2021) The BET inhibitor attenuates the inflammatory response and cell migration in human microglial HMC3 cell line.; Sci Rep, 11: 8828 |
|
GSE155408 |
| Baek, Myungin et al. (2019) Molecular Logic of Spinocerebellar Tract Neuron Diversity and Connectivity.; Cell Rep, 27: 2620-2635.e4 |
|
GSE129948 |
| Baeken, Marius W et al. (2024) Epigenetic regulation of the respiratory chain by a mitochondrial distress-related redox signal.; Front Cell Dev Biol, 13: 1608400 |
|
GSE229460 |
| Baena, Esther et al. (2013) ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients.; Genes Dev, 27: 683-98 |
|
GSE39355 GSE39353 GSE39354 |
| Baens, Mathijs et al. (2014) MALT1 auto-proteolysis is essential for NF-?B-dependent gene transcription in activated lymphocytes.; PLoS One, 9: e103774 |
|
GSE52934 |
| Baer, Claudia et al. (2004) Profiling and functional annotation of mRNA gene expression in pediatric rhabdomyosarcoma and Ewing's sarcoma.; Int J Cancer, 110: 687-94 |
|
GSE967 |
| Bagadia, Prachi et al. (2019) An Nfil3-Zeb2-Id2 pathway imposes Irf8 enhancer switching during cDC1 development.; Nat Immunol, 20: 1174-1185 |
|
GSE123799 GSE123796 GSE123797 GSE123798 |
| Bagamasbad, Pia D et al. (2019) Coordinated transcriptional regulation by thyroid hormone and glucocorticoid interaction in adult mouse hippocampus-derived neuronal cells.; PLoS One, 14: e0220378 |
|
GSE132423 |
| Bagley, Jared R et al. (2022) Extreme phenotypic diversity in operant response to intravenous cocaine or saline infusion in the hybrid mouse diversity panel.; Addict Biol, 27: e13162 |
|
GSE186981 |
| Baglietto-Vargas, David et al. (2021) Generation of a humanized Aβ expressing mouse demonstrating aspects of Alzheimer's disease-like pathology.; Nat Commun, 12: 2421 |
|
GSE116199 |
| Bagot, Rosemary C et al. (2016) Circuit-wide Transcriptional Profiling Reveals Brain Region-Specific Gene Networks Regulating Depression Susceptibility.; Neuron, 90: 969-83 |
|
GSE72343 |
| Bagot, Rosemary C et al. (2017) Ketamine and Imipramine Reverse Transcriptional Signatures of Susceptibility and Induce Resilience-Specific Gene Expression Profiles.; Biol Psychiatry, 81: 285-295 |
|
GSE81672 |
| Bagó, Juli R et al. (2017) Tumor-homing cytotoxic human induced neural stem cells for cancer therapy.; Sci Transl Med, 9: [no pages] |
|
GSE92839 |
| Bahadori, Kasra et al. (2024) Inflammatory Gene Expression in Livers Undergoing Ex Situ Normothermic Perfusion Is Attenuated by Leukocyte Removal From the Perfusate.; Transplantation, [no vol.]: [no pages] |
|
GSE245976 |
| Bahat, Anat et al. (2024) Lowering mutant huntingtin by small molecules relieves Huntington's disease symptoms and progression.; EMBO Mol Med, 16: 523-546 |
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GSE225788 GSE225789 |
| Bahia, Ravinder K et al. (2023) Epigenetic and molecular coordination between HDAC2 and SMAD3-SKI regulates essential brain tumour stem cell characteristics.; Nat Commun, 14: 5051 |
|
GSE214721 |
| Bahn, Young Jae et al. (2023) CDK4-E2F3 signals enhance oxidative skeletal muscle fiber numbers and function to affect myogenesis and metabolism.; J Clin Invest, 133: [no pages] |
|
GSE101820 |
| Bahr, Timothy M et al. (2013) Peripheral blood mononuclear cell gene expression in chronic obstructive pulmonary disease.; Am J Respir Cell Mol Biol, [no vol.]: [no pages] |
|
GSE42057 |
| Bahreini, Amir et al. (2017) Mutation site and context dependent effects of ESR1 mutation in genome-edited breast cancer cell models.; Breast Cancer Res, 19: 60 |
|
GSE89888 |
| Bai, Bing et al. (2020) Deep Multilayer Brain Proteomics Identifies Molecular Networks in Alzheimer's Disease Progression.; Neuron, 105: 975-991.e7 |
|
GSE140286 |
| Bai, Guangyang et al. (2025) Hexokinase 2 promotes ISGylation of Acyl-CoA synthetase long-chain family member 4 in sepsis-induced microglia cells.; J Lipid Res, 66: 100776 |
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GSE280721.2 GSE280721.1 |
| Bai, Jianwu et al. (2015) Phenotypic responses of differentiated asthmatic human airway epithelial cultures to rhinovirus.; PLoS One, 10: e0118286 |
|
GSE61141 |
| Bai, Longchuan et al. (2017) Targeted Degradation of BET Proteins in Triple-Negative Breast Cancer.; Cancer Res, 77: 2476-2487 |
|
GSE95375 |
| Bai, Mingliang et al. (2020) Critical regulation of a NDIME/MEF2C axis in embryonic stem cell neural differentiation and autism.; EMBO Rep, 21: e50283 |
|
GSE143606 |
| Bai, Xupeng et al. (2024) METTL14 suppresses the expression of YAP1 and the stemness of triple-negative breast cancer.; J Exp Clin Cancer Res, 43: 307 |
|
GSE245282 |
| Bai, Yang et al. (2023) Disulfiram blocks inflammatory TLR4 signaling by targeting MD-2.; Proc Natl Acad Sci U S A, 120: e2306399120 |
|
GSE237028 |
| Bai, Yuchen et al. (2023) YBX1 integration of oncogenic PI3K/mTOR signalling regulates the fitness of malignant epithelial cells.; Nat Commun, 14: 1591 |
|
GSE226355 |
| Bai, Zhonghao et al. (2023) PRDX1 Cys52Ser variant alleviates nonalcoholic steatohepatitis by reducing inflammation in mice.; Mol Metab, 76: 101789 |
|
GSE240198 |
| Baier, Paul C et al. (2014) Mice lacking the circadian modulators SHARP1 and SHARP2 display altered sleep and mixed state endophenotypes of psychiatric disorders.; PLoS One, 9: e110310 |
|
GSE59941 |
| Bail, Kathrin et al. (2017) Differential effects of FTY720 on the B cell compartment in a mouse model of multiple sclerosis.; J Neuroinflammation, 14: 148 |
|
GSE94636 GSE101753 |
| Bailey, Shannon T et al. (2014) NF-κB activation-induced anti-apoptosis renders HER2-positive cells drug resistant and accelerates tumor growth.; Mol Cancer Res, 12: 408-420 |
|
GSE52707 |
| Baines, Katherine J et al. (2014) Sputum gene expression signature of 6 biomarkers discriminates asthma inflammatory phenotypes.; J Allergy Clin Immunol, 133: 997-1007 |
|
GSE45111 |
| Baines, Kelly J et al. (2019) Maternal Immune Activation Alters Fetal Brain Development and Enhances Proliferation of Neural Precursor Cells in Rats.; Front Immunol, 11: 1145 |
|
GSE145167 |
| Baird, Thomas D et al. (2014) Selective mRNA translation during eIF2 phosphorylation induces expression of IBTK?.; Mol Biol Cell, 25: 1686-97 |
|
GSE54581 |
| Baitsch, Lukas et al. (2011) Exhaustion of tumor-specific CD8? T cells in metastases from melanoma patients.; J Clin Invest, 121: 2350-60 |
|
GSE24536 |
| Baizabal, José-Manuel et al. (2018) The Epigenetic State of PRDM16-Regulated Enhancers in Radial Glia Controls Cortical Neuron Position.; Neuron, 98: 945-962.e8 |
|
GSE111660 |
| Bajikar, Sameer S et al. (2025) Acute MeCP2 loss in adult mice reveals transcriptional and chromatin changes that precede neurological dysfunction and inform pathogenesis.; Neuron, 113: 380-395.e8 |
|
GSE246119 |
| Bajo-Grañeras, Raquel et al. (2011) Apolipoprotein D alters the early transcriptional response to oxidative stress in the adult cerebellum.; J Neurochem, 117: 949-60 |
|
GSE28643 |
| Bajpai, Vivek K et al. (2017) Reprogramming Postnatal Human Epidermal Keratinocytes Toward Functional Neural Crest Fates.; Stem Cells, 35: 1402-1415 |
|
GSE72268 |
| Bakay, Marina et al. (2006) Nuclear envelope dystrophies show a transcriptional fingerprint suggesting disruption of Rb-MyoD pathways in muscle regeneration.; Brain, 129: 996-1013 |
|
GSE3307 |
| Baker, Brennan H et al. (2023) Sex-specific neurobehavioral and prefrontal cortex gene expression alterations following developmental acetaminophen exposure in mice.; Neurobiol Dis, 177: 105970 |
|
GSE198424 |
| Baker, Bryan A et al. (2014) Ontology analysis of global gene expression differences of human bone marrow stromal cells cultured on 3D scaffolds or 2D films.; Biomaterials, 35: 6716-26 |
|
GSE50744 |
| Baker, David J et al. (2015) Lysosomal and phagocytic activity is increased in astrocytes during disease progression in the SOD1 (G93A) mouse model of amyotrophic lateral sclerosis.; Front Cell Neurosci, 9: 410 |
|
GSE69166 |
| Baker, Mai et al. (2026) SF3B1K700Erewires splicing of cell cycle regulators.; RNA, 32: 394-407 |
|
GSE310035 |
| Baker, Patrick E et al. (2006) Analysis of gene expression differences between utrophin/dystrophin-deficient vs mdx skeletal muscles reveals a specific upregulation of slow muscle genes in limb muscles.; Neurogenetics, 7: 81-91 |
|
GSE1463 |
| Baker, Steven Andrew et al. (2013) An AT-hook domain in MeCP2 determines the clinical course of Rett syndrome and related disorders.; Cell, 152: 984-96 |
|
GSE42987 |
| Bakhashab, Sherin et al. (2014) Reference genes for expression studies in hypoxia and hyperglycemia models in human umbilical vein endothelial cells.; G3 (Bethesda), 4: 2159-65 |
|
GSE46263 |
| Bakhashab, Sherin et al. (2016) Metformin improves the angiogenic potential of human CD34⁺ cells co-incident with downregulating CXCL10 and TIMP1 gene expression and increasing VEGFA under hyperglycemia and hypoxia within a therapeutic window for myocardial infarction.; Cardiovasc Diabetol, 15: 27 |
|
GSE46262 |
| Bakiri, Latifa et al. (2024) Liver cancer development driven by the AP-1/c-Jun~Fra-2 dimer through c-Myc.; Proc Natl Acad Sci U S A, 121: e2404188121 |
|
GSE261005 |
| Bakulski, Kelly M et al. (2020) Single-Cell Analysis of the Gene Expression Effects of Developmental Lead (Pb) Exposure on the Mouse Hippocampus.; Toxicol Sci, 176: 396-409 |
|
GSE151723 |
| Balabanova, Silvia et al. (2014) The neuroendocrine phenotype of gastric myofibroblasts and its loss with cancer progression.; Carcinogenesis, [no vol.]: [no pages] |
|
GSE44740 |
| Balacescu, Ovidiu et al. (2014) Gene expression profiling reveals activation of the FA/BRCA pathway in advanced squamous cervical cancer with intrinsic resistance and therapy failure.; BMC Cancer, 14: 246 |
|
GSE56363 |
| Balachandran, Vinod P et al. (2011) Imatinib potentiates antitumor T cell responses in gastrointestinal stromal tumor through the inhibition of Ido.; Nat Med, 17: 1094-100 |
|
GSE30416 |
| Balagopal, Prabhakaran et al. (2006) Oxandrolone enhances skeletal muscle myosin synthesis and alters global gene expression profile in Duchenne muscular dystrophy.; Am J Physiol Endocrinol Metab, 290: E530-9 |
|
GSE1764 |
| Balboni, Nicola et al. (2024) Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs).; Cell Mol Biol Lett, 29: 44 |
|
GSE236054 |
| Bald, Tobias et al. (2014) Ultraviolet-radiation-induced inflammation promotes angiotropism and metastasis in melanoma.; Nature, 507: 109-13 |
|
GSE51221 |
| Baldi, Alfonso et al. (2011) Apoptosis induced by piroxicam plus cisplatin combined treatment is triggered by p21 in mesothelioma.; PLoS One, 6: e23569 |
|
GSE22445 |
| Baldo, Guilherme et al. (2011) Pathogenesis of aortic dilatation in mucopolysaccharidosis VII mice may involve complement activation.; Mol Genet Metab, 104: 608-19 |
|
GSE30657 |
| Baldwin, Helen M et al. (2013) Microarray analyses demonstrate the involvement of type I interferons in psoriasiform pathology development in D6-deficient mice.; J Biol Chem, 288: 36473-83 |
|
GSE46889 |
| Baleriola, Jimena et al. (2014) Axonally synthesized ATF4 transmits a neurodegenerative signal across brain regions.; Cell, 158: 1159-1172 |
|
GSE70860 |