List of all 16,687 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Bastos, E P et al. (2016) A Set of miRNAs, Their Gene and Protein Targets and Stromal Genes Distinguish Early from Late Onset ER Positive Breast Cancer.; PLoS One, 11: e0154325 |
|
GSE77358 |
| Basu, Rahul et al. (2023) Identification of age-specific gene regulators of La Crosse virus neuroinvasion and pathogenesis.; Nat Commun, 14: 2836 |
|
GSE217382 GSE217433 |
| Basu-Roy, Upal et al. (2015) Sox2 antagonizes the Hippo pathway to maintain stemness in cancer cells.; Nat Commun, 6: 6411 |
|
GSE64965 |
| Basurco, Leyre et al. (2023) Microglia and astrocyte activation is region-dependent in the α-synuclein mouse model of Parkinson's disease.; Glia, 71: 571-587 |
|
GSE191131 |
| Bateman, John F et al. (2013) Transcriptomics of wild-type mice and mice lacking ADAMTS-5 activity identifies genes involved in osteoarthritis initiation and cartilage destruction.; Arthritis Rheum, 65: 1547-60 |
|
GSE45793 |
| Batista, Samantha J et al. (2020) Gasdermin-D-dependent IL-1α release from microglia promotes protective immunity during chronic Toxoplasma gondii infection.; Nat Commun, 11: 3687 |
|
GSE146680 |
| Batra, Ranjan et al. (2014) Loss of MBNL leads to disruption of developmentally regulated alternative polyadenylation in RNA-mediated disease.; Mol Cell, 56: 311-22 |
|
GSE60487.1 |
| Battle, Alexis et al. (2015) Genomic variation. Impact of regulatory variation from RNA to protein.; Science, 347: 664-7 |
|
GSE61742 |
| Battle, Michele A et al. (2008) GATA4 is essential for jejunal function in mice.; Gastroenterology, 135: 1676-1686.e1 |
|
GSE11194 |
| Baty, Florent et al. (2006) Analysis with respect to instrumental variables for the exploration of microarray data structures.; BMC Bioinformatics, 7: 422 |
|
GSE3846 |
| Baty, Florent et al. (2013) EGFR Exon-Level Biomarkers of the Response to Bevacizumab/Erlotinib in Non-Small Cell Lung Cancer.; PLoS One, 8: e72966 |
|
GSE37138 |
| Baty, Florent et al. (2013) Exploring the transcription factor activity in high-throughput gene expression data using RLQ analysis.; BMC Bioinformatics, 14: 178 |
|
GSE30242 |
| Baudry, Anne et al. (2006) PKBalpha is required for adipose differentiation of mouse embryonic fibroblasts.; J Cell Sci, 119: 889-97 |
|
GSE2746 |
| Bauer, Alison K et al. (2011) Identification of candidate genes downstream of TLR4 signaling after ozone exposure in mice: a role for heat-shock protein 70.; Environ Health Perspect, 119: 1091-7 |
|
GSE20715 |
| Bauer, Alison K et al. (2011) Targeted deletion of Nrf2 reduces urethane-induced lung tumor development in mice.; PLoS One, 6: e26590 |
|
GSE29632 |
| Bauer, Joshua A et al. (2010) Identification of markers of taxane sensitivity using proteomic and genomic analyses of breast tumors from patients receiving neoadjuvant paclitaxel and radiation.; Clin Cancer Res, 16: 681-90 |
|
GSE22513 |
| Bauer, Kylynda C et al. (2022) Gut microbes shape microglia and cognitive function during malnutrition.; Glia, 70: 820-841 |
|
GSE138182 |
| Bauer, Omri et al. (2015) Loss of osteoblast Runx3 produces severe congenital osteopenia.; Mol Cell Biol, 35: 1097-109 |
|
GSE57195 |
| Bauer, Susanne et al. (2022) Translatome profiling in fatal familial insomnia implicates TOR signaling in somatostatin neurons.; Life Sci Alliance, 5: [no pages] |
|
GSE198063 |
| Bauer, Susanne et al. (2023) Cerebellar granule neurons induce Cyclin D1 before the onset of motor symptoms in Huntington's disease mice.; Acta Neuropathol Commun, 11: 17 |
|
GSE199837 |
| Bauer, Yasmina et al. (2011) Identification of cathepsin L as a potential sex-specific biomarker for renal damage.; Hypertension, 57: 795-801 |
|
GSE19058 |
| Baumann, Valentin et al. [Unknown date]Targeted removal of epigenetic barriers during transcriptional reprogramming.; Nat Commun, 10: 2119 |
|
GSE119480 |
| Baumel-Alterzon, Sharon et al. (2024) NRF2 is required for neonatal mouse beta cell growth by maintaining redox balance and promoting mitochondrial biogenesis and function.; Diabetologia, 67: 547-560 |
|
GSE242718 |
| Baumgartner, Marybeth et al. [Unknown date]Minor spliceosome inactivation causes microcephaly, owing to cell cycle defects and death of self-amplifying radial glial cells.; Development, 145: [no pages] |
|
GSE96616 |
| Baxan, Nicoleta et al. (2024) Deep phenotyping the right ventricle to establish translational MRI biomarkers for characterization of adaptive and maladaptive states in pulmonary hypertension.; Sci Rep, 14: 29774 |
|
GSE273007 |
| Bayer, Hanna et al. (2017) ALS-causing mutations differentially affect PGC-1? expression and function in the brain vs. peripheral tissues.; Neurobiol Dis, 97: 36-45 |
|
GSE77919 |
| Bayliss, Jill et al. (2016) Lowered H3K27me3 and DNA hypomethylation define poorly prognostic pediatric posterior fossa ependymomas.; Sci Transl Med, 8: 366ra161 |
|
GSE89448 |
| Bayram-Weston, Zubeyde et al. (2015) Similar striatal gene expression profiles in the striatum of the YAC128 and HdhQ150 mouse models of Huntington's disease are not reflected in mutant Huntingtin inclusion prevalence.; BMC Genomics, 16: 1079 |
|
GSE70656 |
| Bazzi, Sam A et al. (2023) Alcohol induces concentration-dependent transcriptomic changes in oligodendrocytes.; bioRxiv, [no vol.]: [no pages] |
|
GSE239691 |
| Beagan, Jonathan A et al. (2016) Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming.; Cell Stem Cell, 18: 611-24 |
|
GSE68582 |
| Beak, Jin-Ah et al. (2022) FK506 and Lactobacillus acidophilus ameliorate acute graft-versus-host disease by modulating the T helper 17/regulatory T-cell balance.; J Transl Med, 20: 104 |
|
GSE174214 |
| Bean, C et al. (2014) Ankrd2 is a modulator of NF-?B-mediated inflammatory responses during muscle differentiation.; Cell Death Dis, 5: e1002 |
|
GSE43500 |
| Beane, Jennifer et al. (2007) Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression.; Genome Biol, 8: R201 |
|
GSE7895 |
| Beane, Jennifer et al. (2011) Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq.; Cancer Prev Res (Phila), 4: 803-17 |
|
GSE29006 |
| Beane, Jennifer et al. (2012) SIRT1 pathway dysregulation in the smoke-exposed airway epithelium and lung tumor tissue.; Cancer Res, 72: 5702-11 |
|
GSE37058 |
| Bearoff, F et al. (2016) Natural genetic variation profoundly regulates gene expression in immune cells and dictates susceptibility to CNS autoimmunity.; Genes Immun, 17: 386-395 |
|
GSE85418 |
| Beasley, Georgia M et al. (2011) Prospective multicenter phase II trial of systemic ADH-1 in combination with melphalan via isolated limb infusion in patients with advanced extremity melanoma.; J Clin Oncol, 29: 1210-5 |
|
GSE22968 |
| Beatty, S C et al. (2016) Survival analysis and microarray profiling identify Cd40 as a candidate for the Salmonella susceptibility locus, Ity5.; Genes Immun, 17: 19-29 |
|
GSE65893 |
| Beauchamp, Marie-Claude et al. (2021) Mutation in Eftud2 causes craniofacial defects in mice via mis-splicing of Mdm2 and increased P53.; Hum Mol Genet, 30: 739-757 |
|
GSE157356 |
| Beaudry, Annie et al. (2023) Repurposing disulfiram, an alcohol-abuse drug, in neuroblastoma causes KAT2A downregulation and in vivo activity with a water/oil emulsion.; Sci Rep, 13: 16443 |
|
GSE226162 |
| Beaumont, Vahri et al. (2016) Phosphodiesterase 10A Inhibition Improves Cortico-Basal Ganglia Function in Huntington's Disease Models.; Neuron, 92: 1220-1237 |
|
GSE89505 |
| Beaver, Laura M et al. (2014) Transcriptome analysis reveals a dynamic and differential transcriptional response to sulforaphane in normal and prostate cancer cells and suggests a role for Sp1 in chemoprevention.; Mol Nutr Food Res, 58: 2001-13 |
|
GSE48812 |
| Bebelman, Maarten P et al. (2024) Hepatocyte differentiation requires anisotropic expansion of bile canaliculi.; Development, 151: [no pages] |
|
GSE278503 |
| Becanovic, Kristina et al. (2010) Transcriptional changes in Huntington disease identified using genome-wide expression profiling and cross-platform analysis.; Hum Mol Genet, 19: 1438-52 |
|
GSE18551 GSE19676 |
| Becker, Kolja et al. (2022) Transcriptome analysis of AAV-induced retinopathy models expressing human VEGF, TNF-α, and IL-6 in murine eyes.; Sci Rep, 12: 19395 |
|
GSE200195 GSE200191 |
| Becker, Léa J et al. (2023) The basolateral amygdala-anterior cingulate pathway contributes to depression-like behaviors and comorbidity with chronic pain behaviors in male mice.; Nat Commun, 14: 2198 |
|
GSE227159 |
| Becker, Maike et al. (2025) Regulatory T cells in the mouse hypothalamus control immune activation and ameliorate metabolic impairments in high-calorie environments.; Nat Commun, 16: 2744 |
|
GSE282067 |
| Becker, Marc A et al. (2016) Insulin Receptor Substrate Adaptor Proteins Mediate Prognostic Gene Expression Profiles in Breast Cancer.; PLoS One, 11: e0150564 |
|
GSE78916 |
| Becker, Marc A et al. (2016) Ridaforolimus (MK-8669) synergizes with Dalotuzumab (MK-0646) in hormone-sensitive breast cancer.; BMC Cancer, 16: 814 |
|
GSE79492 |
| Becker, Stephan T et al. (2012) Peri-Implantitis versus Periodontitis: Functional Differences Indicated by Transcriptome Profiling.; Clin Implant Dent Relat Res, [no vol.]: [no pages] |
|
GSE33774 |
| Beckervordersandforth, Ruth et al. (2010) In vivo fate mapping and expression analysis reveals molecular hallmarks of prospectively isolated adult neural stem cells.; Cell Stem Cell, 7: 744-58 |
|
GSE18765 |
| Becknell, Brian et al. (2013) Molecular basis of renal adaptation in a murine model of congenital obstructive nephropathy.; PLoS One, 8: e72762 |
|
GSE48041 |
| Becktel, Danielle A et al. (2022) Repeated Administration of 2-Hydroxypropyl-β-Cyclodextrin (HPβCD) Attenuates the Chronic Inflammatory Response to Experimental Stroke.; J Neurosci, 42: 325-348 |
|
GSE173713 GSE173714 GSE173544 |
| Bednarczyk, Monika et al. (2022) β2 Integrins on Dendritic Cells Modulate Cytokine Signaling and Inflammation-Associated Gene Expression, and Are Required for Induction of Autoimmune Encephalomyelitis.; Cells, 11: [no pages] |
|
GSE203448 |
| Bedogni, Francesco et al. (2010) Tbr1 regulates regional and laminar identity of postmitotic neurons in developing neocortex.; Proc Natl Acad Sci U S A, 107: 13129-34 |
|
GSE22371.2 GSE22371.1 |
| Bedolla, Diana E et al. (2011) A component of retinal light adaptation mediated by the thyroid hormone cascade.; PLoS One, 6: e26334 |
|
GSE29299 |
| Bedrosian, Tracy A et al. (2021) Lamin B1 decline underlies age-related loss of adult hippocampal neurogenesis.; EMBO J, 40: e105819 |
|
GSE156156 |
| Beech, R D et al. (2013) Gene-expression differences in peripheral blood between lithium responders and non-responders in the Lithium Treatment-Moderate dose Use Study (LiTMUS).; Pharmacogenomics J, [no vol.]: [no pages] |
|
GSE45484 |
| Beech, Robert D et al. (2010) Increased peripheral blood expression of electron transport chain genes in bipolar depression.; Bipolar Disord, 12: 813-24 |
|
GSE23848 |
| Beerlage, Christiane et al. (2013) Hypoxia-inducible factor 1-regulated lysyl oxidase is involved in Staphylococcus aureus abscess formation.; Infect Immun, 81: 2562-73 |
|
GSE44943 |
| Begun, Jakob et al. (2015) Integrated Genomics of Crohn's Disease Risk Variant Identifies a Role for CLEC12A in Antibacterial Autophagy.; Cell Rep, 11: 1905-18 |
|
GSE69132 |
| Behera, Amit K et al. (2019) Functional interplay between YY1 and CARM1 promotes oral carcinogenesis.; Oncotarget, 10: 3709-3724 |
|
GSE125317 |
| Beheshti, Afshin et al. (2013) Age and space irradiation modulate tumor progression: implications for carcinogenesis risk.; Radiat Res, 179: 208-20 |
|
GSE45606 |
| Beheshti, Afshin et al. (2014) Proton irradiation augments the suppression of tumor progression observed with advanced age.; Radiat Res, 181: 272-83 |
|
GSE45609 |
| Behnan, Jinan et al. [Unknown date]Identification and characterization of a new source of adult human neural progenitors.; Cell Death Dis, 8: e2991 |
|
GSE89201 |
| Behrangi, Newshan et al. (2022) Siponimod ameliorates metabolic oligodendrocyte injury via the sphingosine-1 phosphate receptor 5.; Proc Natl Acad Sci U S A, 119: e2204509119 |
|
GSE213374 |
| Behrendt, Rayk et al. (2013) Mouse SAMHD1 has antiretroviral activity and suppresses a spontaneous cell-intrinsic antiviral response.; Cell Rep, 4: 689-96 |
|
GSE45358 GSE41879 |
| Behrens, Kira et al. [Unknown date]Runx1 downregulates stem cell and megakaryocytic transcription programs that support niche interactions.; Blood, 127: 3369-81 |
|
GSE81181 GSE81177 |
| Behrmann, Catherine A et al. (2024) Coordinated Targeting of S6K1/2 and AXL Disrupts Pyrimidine Biosynthesis in PTEN-Deficient Glioblastoma.; Cancer Res Commun, 4: 2215-2227 |
|
GSE196591 |
| Behura, Susanta K et al. (2019) Evidence for functional interactions between the placenta and brain in pregnant mice.; FASEB J, 33: 4261-4272 |
|
GSE121799 |
| Beier, Ulf H et al. (2012) Histone deacetylases 6 and 9 and sirtuin-1 control Foxp3+ regulatory T cell function through shared and isoform-specific mechanisms.; Sci Signal, 5: ra45 |
|
GSE26425 |
| Beierle, Jacob A et al. (2022) Genetic basis of thermal nociceptive sensitivity and brain weight in a BALB/c reduced complexity cross.; Mol Pain, 18: 17448069221079540 |
|
GSE196334 GSE196302 GSE196352 |
| Beins, Eva et al. (2016) Characterization of inflammatory markers and transcriptome profiles of differentially activated embryonic stem cell-derived microglia.; Glia, 64: 1007-20 |
|
GSE77064 GSE77062 GSE70383 |
| Beiting, Daniel P et al. (2015) The Orphan Nuclear Receptor TLX Is an Enhancer of STAT1-Mediated Transcription and Immunity to Toxoplasma gondii.; PLoS Biol, 13: e1002200 |
|
GSE55750 GSE55749 |
| Beitzinger, Michaela et al. (2008) p73 poses a barrier to malignant transformation by limiting anchorage-independent growth.; EMBO J, 27: 792-803 |
|
GSE7201 |
| Bejaoui, Meriem et al. (2021) Regulating cell fate of human amnion epithelial cells using natural compounds: an example of enhanced neural and pigment differentiation by 3,4,5-tri-O-caffeoylquinic acid.; Cell Commun Signal, 19: 26 |
|
GSE153617 |
| Bekenstein, Uriya et al. [Unknown date]Dynamic changes in murine forebrain miR-211 expression associate with cholinergic imbalances and epileptiform activity.; Proc Natl Acad Sci U S A, 114: E4996-E5005 |
|
GSE99307 |
| Belal, Sophie et al. (2022) Glutamate-Induced Deregulation of Krebs Cycle in Mitochondrial Encephalopathy Lactic Acidosis Syndrome Stroke-Like Episodes (MELAS) Syndrome Is Alleviated by Ketone Body Exposure.; Biomedicines, 10: [no pages] |
|
GSE165953 |
| Belenki, Dimitri et al. (2025) Senescence-associated lineage-aberrant plasticity evokes T-cell-mediated tumor control.; Nat Commun, 16: 3079 |
|
GSE224948 |
| Belfiori, Lautaro Francisco et al. (2024) Nigral transcriptomic profiles in Engrailed-1 hemizygous mouse models of Parkinson's disease reveal upregulation of oxidative phosphorylation-related genes associated with delayed dopaminergic neurodegeneration.; Front Aging Neurosci, 16: 1337365 |
|
GSE236461 |
| Belgard, T Grant et al. (2011) A transcriptomic atlas of mouse neocortical layers.; Neuron, 71: 605-16 |
|
GSE27243 |
| Belhocine, Sarah et al. (2022) Context-dependent transcriptional regulation of microglial proliferation.; Glia, 70: 572-589 |
|
GSE166236 |
| Beliakova-Bethell, Nadejda et al. (2014) Maraviroc intensification in patients with suppressed HIV viremia has limited effects on CD4+ T cell recovery and gene expression.; Antiviral Res, 107: 42-9 |
|
GSE56804 |
| Beliakova-Bethell, Nadejda et al. (2014) The effect of cell subset isolation method on gene expression in leukocytes.; Cytometry A, 85: 94-104 |
|
GSE50008 |
| Belin, Sophie et al. [Unknown date]Neuregulin 1 type III improves peripheral nerve myelination in a mouse model of congenital hypomyelinating neuropathy.; Hum Mol Genet, 28: 1260-1273 |
|
GSE101808 |
| Bell, Catherine C et al. (2017) Transcriptional, Functional, and Mechanistic Comparisons of Stem Cell-Derived Hepatocytes, HepaRG Cells, and Three-Dimensional Human Hepatocyte Spheroids as Predictive In Vitro Systems for Drug-Induced Liver Injury.; Drug Metab Dispos, 45: 419-429 |
|
GSE93840 |
| Bégay, Valérie et al. (2015) Deregulation of the endogenous C/EBPβ LIP isoform predisposes to tumorigenesis.; J Mol Med (Berl), 93: 39-49 |
|
GSE53770 |