List of all 17,697 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Barelli, Carlotta et al. (2025) Morphoregulatory ADD3 underlies glioblastoma growth and formation of tumor-tumor connections.; Life Sci Alliance, 8: [no pages] |
|
GSE280761 |
| Barger, Jamie L et al. (2008) A low dose of dietary resveratrol partially mimics caloric restriction and retards aging parameters in mice.; PLoS One, 3: e2264 |
|
GSE11291 |
| Barger, Jamie L et al. (2017) Identification of tissue-specific transcriptional markers of caloric restriction in the mouse and their use to evaluate caloric restriction mimetics.; Aging Cell, 16: 750-760 |
|
GSE75569 |
| Bargiela, Ariadna et al. (2019) Increased Muscleblind levels by chloroquine treatment improve myotonic dystrophy type 1 phenotypes in in vitro and in vivo models.; Proc Natl Acad Sci U S A, 116: 25203-25213 |
|
GSE128844 |
| Barham, Caroline et al. (2018) RNA-Seq Analysis of Spinal Cord Tissues from hPFN1G118VTransgenic Mouse Model of ALS at Pre-symptomatic and End-Stages of Disease.; Sci Rep, 8: 13737 |
|
GSE113924 |
| Bariana, Manpreet et al. (2022) Inhibition of NF-κB DNA Binding Suppresses Myeloma Growth via Intracellular Redox and Tumor Microenvironment Modulation.; Mol Cancer Ther, 21: 1798-1809 |
|
GSE200385 |
| Barilla, Rocky M et al. (2025) Type 2 cytokines act on enteric sensory neurons to regulate neuropeptide-driven host defense.; Science, [no vol.]: eadn9850 |
|
GSE292634 |
| Barisano, Giuseppe et al. (2022) A "multi-omics" analysis of blood-brain barrier and synaptic dysfunction in APOE4 mice.; J Exp Med, 219: [no pages] |
|
GSE185063 |
| Barish, Grant D et al. (2012) The Bcl6-SMRT/NCoR cistrome represses inflammation to attenuate atherosclerosis.; Cell Metab, 15: 554-62 |
|
GSE16527 |
| Barisic, Darko et al. (2019) Mammalian ISWI and SWI/SNF selectively mediate binding of distinct transcription factors.; Nature, 569: 136-140 |
|
GSE112135 |
| Barker, Scarlett J et al. (2021) MEF2 is a key regulator of cognitive potential and confers resilience to neurodegeneration.; Sci Transl Med, 13: eabd7695 |
|
GSE176435 |
| Barko, Kelly et al. (2022) Brain region- and sex-specific transcriptional profiles of microglia.; Front Psychiatry, 13: 945548 |
|
GSE203553 |
| Barmpa, Kyriaki et al. (2024) Modeling early phenotypes of Parkinson's disease by age-induced midbrain-striatum assembloids.; Commun Biol, 7: 1561 |
|
GSE236458 |
| Barnada, Samantha M et al. (2024) ARID1A-BAF coordinates ZIC2 genomic occupancy for epithelial-to-mesenchymal transition in cranial neural crest specification.; Am J Hum Genet, 111: 2232-2252 |
|
GSE261846 |
| Barnes, M G et al. (2004) Gene expression in juvenile arthritis and spondyloarthropathy: pro-angiogenic ELR+ chemokine genes relate to course of arthritis.; Rheumatology (Oxford), 43: 973-9 |
|
GSE1402 |
| Barnes, Michael G et al. (2009) Subtype-specific peripheral blood gene expression profiles in recent-onset juvenile idiopathic arthritis.; Arthritis Rheum, 60: 2102-12 |
|
GSE13501 |
| Barnes, Michael R et al. (2011) Transcription and pathway analysis of the superior temporal cortex and anterior prefrontal cortex in schizophrenia.; J Neurosci Res, 89: 1218-27 |
|
GSE21935 |
| Barnes, Ralston M et al. (2016) MEF2C regulates outflow tract alignment and transcriptional control of Tdgf1.; Development, 143: 774-9 |
|
GSE68147 |
| Barnett, Matthew P G et al. (2010) Changes in colon gene expression associated with increased colon inflammation in interleukin-10 gene-deficient mice inoculated with Enterococcus species.; BMC Immunol, 11: 39 |
|
GSE12223 |
| Barnett, Matthew P G et al. (2015) Low folate and selenium in the mouse maternal diet alters liver gene expression patterns in the offspring after weaning.; Nutrients, 7: 3370-86 |
|
GSE68179 |
| Barr, Gordon A et al. (2009) Transitions in infant learning are modulated by dopamine in the amygdala.; Nat Neurosci, 12: 1367-9 |
|
GSE17651.1 GSE17651.2 |
| Barr, T L et al. (2010) Genomic biomarkers and cellular pathways of ischemic stroke by RNA gene expression profiling.; Neurology, 75: 1009-14 |
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GSE16561 |
| Barr, Taura L et al. (2015) A genomic profile of the immune response to stroke with implications for stroke recovery.; Biol Res Nurs, 17: 248-56 |
|
GSE37587 |
| Barral, Serena et al. (2013) Efficient neuronal in vitro and in vivo differentiation after immunomagnetic purification of mESC derived neuronal precursors.; Stem Cell Res, 10: 133-46 |
|
GSE35125 |
| Barrand, Sanna et al. (2017) Impact of maternal high fat diet on hypothalamic transcriptome in neonatal Sprague Dawley rats.; PLoS One, 12: e0189492 |
|
GSE107324 |
| Barrans, Sharon L et al. (2012) Whole genome expression profiling based on paraffin embedded tissue can be used to classify diffuse large B-cell lymphoma and predict clinical outcome.; Br J Haematol, [no vol.]: [no pages] |
|
GSE32918 |
| Barreiro, Luis B et al. (2012) Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection.; Proc Natl Acad Sci U S A, 109: 1204-9 |
|
GSE34151 |
| Barrero, Mercedes et al. (2024) The interferon γ pathway enhances pluripotency and X-chromosome reactivation in iPSC reprogramming.; Sci Adv, 10: eadj8862 |
|
GSE236245 |
| Barretina, Jordi et al. (2010) Subtype-specific genomic alterations define new targets for soft-tissue sarcoma therapy.; Nat Genet, 42: 715-21 |
|
GSE21122 |
| Barreto, George E et al. (2012) Effects of heat shock protein 72 (Hsp72) on evolution of astrocyte activation following stroke in the mouse.; Exp Neurol, 238: 284-96 |
|
GSE28731 |
| Barrett, Alison K et al. (2024) HDAC activity is dispensable for repression of cell-cycle genes by DREAM and E2F:RB complexes.; Nat Commun, 15: 4450 |
|
GSE240734 |
| Barrett, Catherine E et al. (2017) Developmental disruption of amygdala transcriptome and socioemotional behavior in rats exposed to valproic acid prenatally.; Mol Autism, 8: 42 |
|
GSE98777 |
| Barrette, Benoit et al. (2010) Transcriptional profiling of the injured sciatic nerve of mice carrying the Wld(S) mutant gene: identification of genes involved in neuroprotection, neuroinflammation, and nerve regeneration.; Brain Behav Immun, 24: 1254-67 |
|
GSE22291 |
| Barreyro, Laura et al. (2012) Overexpression of IL-1 receptor accessory protein in stem and progenitor cells and outcome correlation in AML and MDS.; Blood, 120: 1290-8 |
|
GSE35008 GSE35010 |
| Barreyro, Laura et al. (2024) Dysregulated innate immune signaling cooperates with RUNX1 mutations to transform an MDS-like disease to AML.; iScience, 27: 109809 |
|
GSE264051 |
| Barrientos, Tomasa et al. (2015) Metabolic Catastrophe in Mice Lacking Transferrin Receptor in Muscle.; EBioMedicine, 2: 1705-17 |
|
GSE68675 |
| Barrios-Camacho, Camila M et al. (2024) An in vitro model of acute horizontal basal cell activation reveals gene regulatory networks underlying the nascent activation phase.; Stem Cell Reports, 19: 1156-1171 |
|
GSE215797 |
| Barry, Antonia et al. (2023) Investigating the effects of arginine methylation inhibitors on microdissected brain tumour biopsies maintained in a miniaturised perfusion system.; Lab Chip, 23: 2664-2682 |
|
GSE226721 |
| Barry, Christopher et al. (2017) Uniform neural tissue models produced on synthetic hydrogels using standard culture techniques.; Exp Biol Med (Maywood), 242: 1679-1689 |
|
GSE63935 |
| Barry, Sayka et al. (2013) S100P is a metastasis-associated gene that facilitates transendothelial migration of pancreatic cancer cells.; Clin Exp Metastasis, 30: 251-64 |
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GSE19279 GSE19280 |
| Barry, William T et al. (2010) Intratumor heterogeneity and precision of microarray-based predictors of breast cancer biology and clinical outcome.; J Clin Oncol, 28: 2198-206 |
|
GSE23593 |
| Barsanele, Pietra Souza et al. (2024) Glaucoma-inducing retinal ganglion cell degeneration alters diurnal rhythm of key molecular components of the central clock and locomotor activity in mice.; FASEB J, 38: e70109 |
|
GSE268323 |
| Barta, Julie A et al. (2020) The lung-enriched p53 mutants V157F and R158L/P regulate a gain of function transcriptome in lung cancer.; Carcinogenesis, 41: 67-77 |
|
GSE120534 |
| Barth, Andreas S et al. (2005) Functional profiling of human atrial and ventricular gene expression.; Pflugers Arch, 450: 201-8 |
|
GSE2240 |
| Barth, Andreas S et al. (2006) Identification of a common gene expression signature in dilated cardiomyopathy across independent microarray studies.; J Am Coll Cardiol, 48: 1610-7 |
|
GSE3586 |
| Barthas, Florent et al. (2017) Cingulate Overexpression of Mitogen-Activated Protein Kinase Phosphatase-1 as a Key Factor for Depression.; Biol Psychiatry, 82: 370-379 |
|
GSE92718 |
| Barthold, Julia S et al. (2008) Altered expression of muscle- and cytoskeleton-related genes in a rat strain with inherited cryptorchidism.; J Androl, 29: 352-66 |
|
GSE7755 |
| Bartoletti-Stella, Anna et al. (2019) Analysis of RNA Expression Profiles Identifies Dysregulated Vesicle Trafficking Pathways in Creutzfeldt-Jakob Disease.; Mol Neurobiol, 56: 5009-5024 |
|
GSE124571 |
| Bartolomé, Alberto et al. (2022) An Overfeeding-Induced Obesity Mouse Model Reveals Necessity for Sin3a in Postnatal Peak β-Cell Mass Acquisition.; Diabetes, 71: 2395-2401 |
|
GSE199907 |
| Barton, Joshua R et al. (2023) Intestinal neuropod cell GUCY2C regulates visceral pain.; J Clin Invest, 133: [no pages] |
|
GSE207870 |
| Bartosch, Anne Marie W et al. (2024) ZCCHC17 Modulates Neuronal RNA Splicing and Supports Cognitive Resilience in Alzheimer's Disease.; J Neurosci, 44: [no pages] |
|
GSE199241 |
| Bartusel, Michaela et al. (2025) A non-syndromic orofacial cleft risk locus links tRNA splicing defects to neural crest cell pathologies.; Am J Hum Genet, 112: 1097-1116 |
|
GSE259331 |
| Barua, Subit et al. (2014) Increasing maternal or post-weaning folic acid alters gene expression and moderately changes behavior in the offspring.; PLoS One, 9: e101674 |
|
GSE45607 |
| Barua, Subit et al. (2015) Microarray analysis reveals higher gestational folic Acid alters expression of genes in the cerebellum of mice offspring-a pilot study.; Brain Sci, 5: 14-31 |
|
GSE60531 |
| Baruch, Kuti et al. (2014) Aging. Aging-induced type I interferon response at the choroid plexus negatively affects brain function.; Science, 346: 89-93 |
|
GSE62762 |
| Baruch, Kuti et al. (2016) PD-1 immune checkpoint blockade reduces pathology and improves memory in mouse models of Alzheimer's disease.; Nat Med, 22: 135-7 |
|
GSE75484 |
| Barutcu, A Rasim et al. (2016) RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.; Biochim Biophys Acta, 1859: 1389-1397 |
|
GSE75070 |
| Barés, Gisel et al. (2025) Mammalian TatD DNase domain containing 1 (TATDN1) is a proteostasis-responsive gene with roles in ventricular structure and neuromuscular function.; FEBS J, [no vol.]: [no pages] |
|
GSE167387 |
| Bas-Orth, Carlos et al. (2016) The calmodulin-binding transcription activator CAMTA1 is required for long-term memory formation in mice.; Learn Mem, 23: 313-21 |
|
GSE62122 |
| Basavappa, Megha G et al. (2022) The lncRNA ALPHA specifically targets chikungunya virus to control infection.; Mol Cell, 82: 3729-3744.e10 |
|
GSE184306 |
| Baser, Avni et al. (2019) Onset of differentiation is post-transcriptionally controlled in adult neural stem cells.; Nature, 566: 100-104 |
|
GSE94991 |
| Basham, Beth et al. (2008) In vivo identification of novel STAT5 target genes.; Nucleic Acids Res, 36: 3802-18 |
|
GSE10389 |
| Bashir, Mohsin et al. (2015) Activin-A signaling promotes epithelial-mesenchymal transition, invasion, and metastatic growth of breast cancer.; NPJ Breast Cancer, 1: 15007 |
|
GSE40206 |
| Basilicata, M Felicia et al. (2018) De novo mutations in MSL3 cause an X-linked syndrome marked by impaired histone H4 lysine 16 acetylation.; Nat Genet, 50: 1442-1451 |
|
GSE102250 |
| Basinski, Brian W et al. (2025) A zinc finger-dependent, PRDM13-driven mechanism regulates retinal progenitor cell fate from mouse embryonic stem cells via WNT signaling.; Stem Cell Reports, 20: 102508 |
|
GSE295608 |
| Baskozos, Georgios et al. (2019) Comprehensive analysis of long noncoding RNA expression in dorsal root ganglion reveals cell-type specificity and dysregulation after nerve injury.; Pain, 160: 463-485 |
|
GSE107181 |
| Basova, Liana V et al. (2020) Systems Biology Analysis of the Antagonizing Effects of HIV-1 Tat Expression in the Brain over Transcriptional Changes Caused by Methamphetamine Sensitization.; Viruses, 12: [no pages] |
|
GSE111925 |
| Basree, Mustafa M et al. (2019) Abrupt involution induces inflammation, estrogenic signaling, and hyperplasia linking lack of breastfeeding with increased risk of breast cancer.; Breast Cancer Res, 21: 80 |
|
GSE135636 |
| Bassaganya-Riera, Josep et al. (2011) Abscisic acid regulates inflammation via ligand-binding domain-independent activation of peroxisome proliferator-activated receptor gamma.; J Biol Chem, 286: 2504-16 |
|
GSE21013 |
| Basse, Astrid L et al. (2023) NAMPT-dependent NAD+biosynthesis controls circadian metabolism in a tissue-specific manner.; Proc Natl Acad Sci U S A, 120: e2220102120 |
|
GSE221550 |
| Bassett, Erin A et al. (2016) Norrin/Frizzled4 signalling in the preneoplastic niche blocks medulloblastoma initiation.; Elife, 5: [no pages] |
|
GSE81962 |
| Bassey-Archibong, Blessing Iquo et al. (2023) An HLA-G/SPAG9/STAT3 axis promotes brain metastases.; Proc Natl Acad Sci U S A, 120: e2205247120 |
|
GSE220156 |
| Basso, Katia et al. (2010) Integrated biochemical and computational approach identifies BCL6 direct target genes controlling multiple pathways in normal germinal center B cells.; Blood, 115: 975-84 |
|
GSE12195 |
| Bassot, Arthur et al. (2023) Identification of a miRNA multi-targeting therapeutic strategy in glioblastoma.; Cell Death Dis, 14: 630 |
|
GSE246708 |
| Bastani, Meysam et al. (2013) A machine learned classifier that uses gene expression data to accurately predict estrogen receptor status.; PLoS One, 8: e82144 |
|
GSE29210.1 |
| Bastien, Dominic et al. (2015) IL-1? Gene Deletion Protects Oligodendrocytes after Spinal Cord Injury through Upregulation of the Survival Factor Tox3.; J Neurosci, 35: 10715-30 |
|
GSE70302 |
| Bastle, R M et al. (2018) In silico identification and in vivo validation of miR-495 as a novel regulator of motivation for cocaine that targets multiple addiction-related networks in the nucleus accumbens.; Mol Psychiatry, 23: 434-443 |
|
GSE85500 |
| Bastos, E P et al. (2016) A Set of miRNAs, Their Gene and Protein Targets and Stromal Genes Distinguish Early from Late Onset ER Positive Breast Cancer.; PLoS One, 11: e0154325 |
|
GSE77358 |
| Basu, Abhishek et al. (2025) Targeting cannabinoid receptor 1 for antagonism in profibrotic alveolar macrophages mitigates pulmonary fibrosis.; JCI Insight, [no vol.]: [no pages] |
|
GSE273132 |
| Basu, Amitava et al. (2020) Phf21b imprints the spatiotemporal epigenetic switch essential for neural stem cell differentiation.; Genes Dev, 34: 1190-1209 |
|
GSE106999.2 |
| Basu, Rahul et al. (2023) Identification of age-specific gene regulators of La Crosse virus neuroinvasion and pathogenesis.; Nat Commun, 14: 2836 |
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GSE217382 GSE217433 |
| Basu-Roy, Upal et al. (2015) Sox2 antagonizes the Hippo pathway to maintain stemness in cancer cells.; Nat Commun, 6: 6411 |
|
GSE64965 |
| Basurco, Leyre et al. (2023) Microglia and astrocyte activation is region-dependent in the α-synuclein mouse model of Parkinson's disease.; Glia, 71: 571-587 |
|
GSE191131 |
| Bateman, John F et al. (2013) Transcriptomics of wild-type mice and mice lacking ADAMTS-5 activity identifies genes involved in osteoarthritis initiation and cartilage destruction.; Arthritis Rheum, 65: 1547-60 |
|
GSE45793 |
| Batista, Samantha J et al. (2020) Gasdermin-D-dependent IL-1α release from microglia promotes protective immunity during chronic Toxoplasma gondii infection.; Nat Commun, 11: 3687 |
|
GSE146680 |
| Batiuk, Mykhailo Y et al. (2022) Upper cortical layer-driven network impairment in schizophrenia.; Sci Adv, 8: eabn8367 |
|
Batiuk-2022 |
| Batki, Julia et al. (2024) Extraembryonic gut endoderm cells undergo programmed cell death during development.; Nat Cell Biol, 26: 868-877 |
|
GSE250083.1 |
| Batra, Ranjan et al. (2014) Loss of MBNL leads to disruption of developmentally regulated alternative polyadenylation in RNA-mediated disease.; Mol Cell, 56: 311-22 |
|
GSE60487.1 |
| Battle, Alexis et al. (2015) Genomic variation. Impact of regulatory variation from RNA to protein.; Science, 347: 664-7 |
|
GSE61742 |
| Battle, Michele A et al. (2008) GATA4 is essential for jejunal function in mice.; Gastroenterology, 135: 1676-1686.e1 |
|
GSE11194 |
| Baty, Florent et al. (2006) Analysis with respect to instrumental variables for the exploration of microarray data structures.; BMC Bioinformatics, 7: 422 |
|
GSE3846 |
| Baty, Florent et al. (2013) EGFR Exon-Level Biomarkers of the Response to Bevacizumab/Erlotinib in Non-Small Cell Lung Cancer.; PLoS One, 8: e72966 |
|
GSE37138 |
| Baty, Florent et al. (2013) Exploring the transcription factor activity in high-throughput gene expression data using RLQ analysis.; BMC Bioinformatics, 14: 178 |
|
GSE30242 |
| Baudry, Anne et al. (2006) PKBalpha is required for adipose differentiation of mouse embryonic fibroblasts.; J Cell Sci, 119: 889-97 |
|
GSE2746 |
| Bauer, Alison K et al. (2011) Identification of candidate genes downstream of TLR4 signaling after ozone exposure in mice: a role for heat-shock protein 70.; Environ Health Perspect, 119: 1091-7 |
|
GSE20715 |
| Bauer, Alison K et al. (2011) Targeted deletion of Nrf2 reduces urethane-induced lung tumor development in mice.; PLoS One, 6: e26590 |
|
GSE29632 |