List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Barrand, Sanna et al. (2017) Impact of maternal high fat diet on hypothalamic transcriptome in neonatal Sprague Dawley rats.; PLoS One, 12: e0189492 |
|
GSE107324 |
| Barrans, Sharon L et al. (2012) Whole genome expression profiling based on paraffin embedded tissue can be used to classify diffuse large B-cell lymphoma and predict clinical outcome.; Br J Haematol, [no vol.]: [no pages] |
|
GSE32918 |
| Barreiro, Luis B et al. (2012) Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection.; Proc Natl Acad Sci U S A, 109: 1204-9 |
|
GSE34151 |
| Barrero, Mercedes et al. (2024) The interferon γ pathway enhances pluripotency and X-chromosome reactivation in iPSC reprogramming.; Sci Adv, 10: eadj8862 |
|
GSE236245 |
| Barretina, Jordi et al. (2010) Subtype-specific genomic alterations define new targets for soft-tissue sarcoma therapy.; Nat Genet, 42: 715-21 |
|
GSE21122 |
| Barreto, George E et al. (2012) Effects of heat shock protein 72 (Hsp72) on evolution of astrocyte activation following stroke in the mouse.; Exp Neurol, 238: 284-96 |
|
GSE28731 |
| Barrett, Alison K et al. (2024) HDAC activity is dispensable for repression of cell-cycle genes by DREAM and E2F:RB complexes.; Nat Commun, 15: 4450 |
|
GSE240734 |
| Barrett, Catherine E et al. (2017) Developmental disruption of amygdala transcriptome and socioemotional behavior in rats exposed to valproic acid prenatally.; Mol Autism, 8: 42 |
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GSE98777 |
| Barrette, Benoit et al. (2010) Transcriptional profiling of the injured sciatic nerve of mice carrying the Wld(S) mutant gene: identification of genes involved in neuroprotection, neuroinflammation, and nerve regeneration.; Brain Behav Immun, 24: 1254-67 |
|
GSE22291 |
| Barreyro, Laura et al. (2012) Overexpression of IL-1 receptor accessory protein in stem and progenitor cells and outcome correlation in AML and MDS.; Blood, 120: 1290-8 |
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GSE35008 GSE35010 |
| Barreyro, Laura et al. (2024) Dysregulated innate immune signaling cooperates with RUNX1 mutations to transform an MDS-like disease to AML.; iScience, 27: 109809 |
|
GSE264051 |
| Barrientos, Tomasa et al. (2015) Metabolic Catastrophe in Mice Lacking Transferrin Receptor in Muscle.; EBioMedicine, 2: 1705-17 |
|
GSE68675 |
| Barrios-Camacho, Camila M et al. (2024) An in vitro model of acute horizontal basal cell activation reveals gene regulatory networks underlying the nascent activation phase.; Stem Cell Reports, 19: 1156-1171 |
|
GSE215797 |
| Barry, Antonia et al. (2023) Investigating the effects of arginine methylation inhibitors on microdissected brain tumour biopsies maintained in a miniaturised perfusion system.; Lab Chip, 23: 2664-2682 |
|
GSE226721 |
| Barry, Christopher et al. (2017) Uniform neural tissue models produced on synthetic hydrogels using standard culture techniques.; Exp Biol Med (Maywood), 242: 1679-1689 |
|
GSE63935 |
| Barry, Sayka et al. (2013) S100P is a metastasis-associated gene that facilitates transendothelial migration of pancreatic cancer cells.; Clin Exp Metastasis, 30: 251-64 |
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GSE19279 GSE19280 |
| Barry, William T et al. (2010) Intratumor heterogeneity and precision of microarray-based predictors of breast cancer biology and clinical outcome.; J Clin Oncol, 28: 2198-206 |
|
GSE23593 |
| Barsanele, Pietra Souza et al. (2024) Glaucoma-inducing retinal ganglion cell degeneration alters diurnal rhythm of key molecular components of the central clock and locomotor activity in mice.; FASEB J, 38: e70109 |
|
GSE268323 |
| Barta, Julie A et al. (2020) The lung-enriched p53 mutants V157F and R158L/P regulate a gain of function transcriptome in lung cancer.; Carcinogenesis, 41: 67-77 |
|
GSE120534 |
| Barth, Andreas S et al. (2005) Functional profiling of human atrial and ventricular gene expression.; Pflugers Arch, 450: 201-8 |
|
GSE2240 |
| Barth, Andreas S et al. (2006) Identification of a common gene expression signature in dilated cardiomyopathy across independent microarray studies.; J Am Coll Cardiol, 48: 1610-7 |
|
GSE3586 |
| Barthas, Florent et al. (2017) Cingulate Overexpression of Mitogen-Activated Protein Kinase Phosphatase-1 as a Key Factor for Depression.; Biol Psychiatry, 82: 370-379 |
|
GSE92718 |
| Barthold, Julia S et al. (2008) Altered expression of muscle- and cytoskeleton-related genes in a rat strain with inherited cryptorchidism.; J Androl, 29: 352-66 |
|
GSE7755 |
| Bartoletti-Stella, Anna et al. (2019) Analysis of RNA Expression Profiles Identifies Dysregulated Vesicle Trafficking Pathways in Creutzfeldt-Jakob Disease.; Mol Neurobiol, 56: 5009-5024 |
|
GSE124571 |
| Bartolomé, Alberto et al. (2022) An Overfeeding-Induced Obesity Mouse Model Reveals Necessity for Sin3a in Postnatal Peak β-Cell Mass Acquisition.; Diabetes, 71: 2395-2401 |
|
GSE199907 |
| Barton, Joshua R et al. (2023) Intestinal neuropod cell GUCY2C regulates visceral pain.; J Clin Invest, 133: [no pages] |
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GSE207870 |
| Bartosch, Anne Marie W et al. (2024) ZCCHC17 Modulates Neuronal RNA Splicing and Supports Cognitive Resilience in Alzheimer's Disease.; J Neurosci, 44: [no pages] |
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GSE199241 |
| Bartusel, Michaela et al. (2025) A non-syndromic orofacial cleft risk locus links tRNA splicing defects to neural crest cell pathologies.; Am J Hum Genet, 112: 1097-1116 |
|
GSE259331 |
| Barua, Subit et al. (2014) Increasing maternal or post-weaning folic acid alters gene expression and moderately changes behavior in the offspring.; PLoS One, 9: e101674 |
|
GSE45607 |
| Barua, Subit et al. (2015) Microarray analysis reveals higher gestational folic Acid alters expression of genes in the cerebellum of mice offspring-a pilot study.; Brain Sci, 5: 14-31 |
|
GSE60531 |
| Baruch, Erez N et al. (2025) Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy.; Nature, 646: 462-473 |
|
GSE289744 GSE292089 |
| Baruch, Kuti et al. (2014) Aging. Aging-induced type I interferon response at the choroid plexus negatively affects brain function.; Science, 346: 89-93 |
|
GSE62762 |
| Baruch, Kuti et al. (2016) PD-1 immune checkpoint blockade reduces pathology and improves memory in mouse models of Alzheimer's disease.; Nat Med, 22: 135-7 |
|
GSE75484 |
| Barutcu, A Rasim et al. (2016) RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells.; Biochim Biophys Acta, 1859: 1389-1397 |
|
GSE75070 |
| Bas-Orth, Carlos et al. (2016) The calmodulin-binding transcription activator CAMTA1 is required for long-term memory formation in mice.; Learn Mem, 23: 313-21 |
|
GSE62122 |
| Basak, S et al. (2026) Novel Roles for the Ectoenzyme CD38 in the Maintenance of Transcriptional and Metabolic Homeostasis in Astrocytes.; Glia, 74: e70112 |
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GSE272765 |
| Basavappa, Megha G et al. (2022) The lncRNA ALPHA specifically targets chikungunya virus to control infection.; Mol Cell, 82: 3729-3744.e10 |
|
GSE184306 |
| Basavaraja, Raghavendra et al. (2024) PARP11 inhibition inactivates tumor-infiltrating regulatory T cells and improves the efficacy of immunotherapies.; Cell Rep Med, 5: 101649 |
|
GSE249299 |
| Baser, Avni et al. (2019) Onset of differentiation is post-transcriptionally controlled in adult neural stem cells.; Nature, 566: 100-104 |
|
GSE94991 |
| Basham, Beth et al. (2008) In vivo identification of novel STAT5 target genes.; Nucleic Acids Res, 36: 3802-18 |
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GSE10389 |
| Bashir, Mohsin et al. (2015) Activin-A signaling promotes epithelial-mesenchymal transition, invasion, and metastatic growth of breast cancer.; NPJ Breast Cancer, 1: 15007 |
|
GSE40206 |
| Basilicata, M Felicia et al. (2018) De novo mutations in MSL3 cause an X-linked syndrome marked by impaired histone H4 lysine 16 acetylation.; Nat Genet, 50: 1442-1451 |
|
GSE102250 |
| Basinski, Brian W et al. (2025) A zinc finger-dependent, PRDM13-driven mechanism regulates retinal progenitor cell fate from mouse embryonic stem cells via WNT signaling.; Stem Cell Reports, 20: 102508 |
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GSE295608 |
| Baskozos, Georgios et al. (2019) Comprehensive analysis of long noncoding RNA expression in dorsal root ganglion reveals cell-type specificity and dysregulation after nerve injury.; Pain, 160: 463-485 |
|
GSE107181 |
| Basova, Liana V et al. (2020) Systems Biology Analysis of the Antagonizing Effects of HIV-1 Tat Expression in the Brain over Transcriptional Changes Caused by Methamphetamine Sensitization.; Viruses, 12: [no pages] |
|
GSE111925 |
| Basree, Mustafa M et al. (2019) Abrupt involution induces inflammation, estrogenic signaling, and hyperplasia linking lack of breastfeeding with increased risk of breast cancer.; Breast Cancer Res, 21: 80 |
|
GSE135636 |
| Bassaganya-Riera, Josep et al. (2011) Abscisic acid regulates inflammation via ligand-binding domain-independent activation of peroxisome proliferator-activated receptor gamma.; J Biol Chem, 286: 2504-16 |
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GSE21013 |
| Basse, Astrid L et al. (2023) NAMPT-dependent NAD+biosynthesis controls circadian metabolism in a tissue-specific manner.; Proc Natl Acad Sci U S A, 120: e2220102120 |
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GSE221550 |
| Bassett, Erin A et al. (2016) Norrin/Frizzled4 signalling in the preneoplastic niche blocks medulloblastoma initiation.; Elife, 5: [no pages] |
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GSE81962 |
| Bassey-Archibong, Blessing Iquo et al. (2023) An HLA-G/SPAG9/STAT3 axis promotes brain metastases.; Proc Natl Acad Sci U S A, 120: e2205247120 |
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GSE220156 |
| Basso, Katia et al. (2010) Integrated biochemical and computational approach identifies BCL6 direct target genes controlling multiple pathways in normal germinal center B cells.; Blood, 115: 975-84 |
|
GSE12195 |
| Bassot, Arthur et al. (2023) Identification of a miRNA multi-targeting therapeutic strategy in glioblastoma.; Cell Death Dis, 14: 630 |
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GSE246708 |
| Bastani, Meysam et al. (2013) A machine learned classifier that uses gene expression data to accurately predict estrogen receptor status.; PLoS One, 8: e82144 |
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GSE29210.1 |
| Bastien, Dominic et al. (2015) IL-1? Gene Deletion Protects Oligodendrocytes after Spinal Cord Injury through Upregulation of the Survival Factor Tox3.; J Neurosci, 35: 10715-30 |
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GSE70302 |
| Bastle, R M et al. (2018) In silico identification and in vivo validation of miR-495 as a novel regulator of motivation for cocaine that targets multiple addiction-related networks in the nucleus accumbens.; Mol Psychiatry, 23: 434-443 |
|
GSE85500 |
| Bastos, E P et al. (2016) A Set of miRNAs, Their Gene and Protein Targets and Stromal Genes Distinguish Early from Late Onset ER Positive Breast Cancer.; PLoS One, 11: e0154325 |
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GSE77358 |
| Basu, Abhishek et al. (2025) Targeting cannabinoid receptor 1 for antagonism in profibrotic alveolar macrophages mitigates pulmonary fibrosis.; JCI Insight, [no vol.]: [no pages] |
|
GSE273132 |
| Basu, Amitava et al. (2020) Phf21b imprints the spatiotemporal epigenetic switch essential for neural stem cell differentiation.; Genes Dev, 34: 1190-1209 |
|
GSE106999.2 |
| Basu, Rahul et al. (2023) Identification of age-specific gene regulators of La Crosse virus neuroinvasion and pathogenesis.; Nat Commun, 14: 2836 |
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GSE217433 GSE217382 |
| Basu-Roy, Upal et al. (2015) Sox2 antagonizes the Hippo pathway to maintain stemness in cancer cells.; Nat Commun, 6: 6411 |
|
GSE64965 |
| Basurco, Leyre et al. (2023) Microglia and astrocyte activation is region-dependent in the α-synuclein mouse model of Parkinson's disease.; Glia, 71: 571-587 |
|
GSE191131 |
| Bate-Eya, Laurel T et al. (2017) Enhancer of zeste homologue 2 plays an important role in neuroblastoma cell survival independent of its histone methyltransferase activity.; Eur J Cancer, 75: 63-72 |
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GSE28409 |
| Bateman, John F et al. (2013) Transcriptomics of wild-type mice and mice lacking ADAMTS-5 activity identifies genes involved in osteoarthritis initiation and cartilage destruction.; Arthritis Rheum, 65: 1547-60 |
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GSE45793 |
| Batista, Samantha J et al. (2020) Gasdermin-D-dependent IL-1α release from microglia promotes protective immunity during chronic Toxoplasma gondii infection.; Nat Commun, 11: 3687 |
|
GSE146680 |
| Batiuk, Mykhailo Y et al. (2022) Upper cortical layer-driven network impairment in schizophrenia.; Sci Adv, 8: eabn8367 |
|
Batiuk-2022 |
| Batki, Julia et al. (2024) Extraembryonic gut endoderm cells undergo programmed cell death during development.; Nat Cell Biol, 26: 868-877 |
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GSE250083.1 |
| Batra, Ranjan et al. (2014) Loss of MBNL leads to disruption of developmentally regulated alternative polyadenylation in RNA-mediated disease.; Mol Cell, 56: 311-22 |
|
GSE60487.1 |
| Battis, Kristina et al. (2022) CSF1R-Mediated Myeloid Cell Depletion Prolongs Lifespan But Aggravates Distinct Motor Symptoms in a Model of Multiple System Atrophy.; J Neurosci, 42: 7673-7688 |
|
GSE197153 |
| Battle, Alexis et al. (2015) Genomic variation. Impact of regulatory variation from RNA to protein.; Science, 347: 664-7 |
|
GSE61742 |
| Battle, Michele A et al. (2008) GATA4 is essential for jejunal function in mice.; Gastroenterology, 135: 1676-1686.e1 |
|
GSE11194 |
| Baty, Florent et al. (2006) Analysis with respect to instrumental variables for the exploration of microarray data structures.; BMC Bioinformatics, 7: 422 |
|
GSE3846 |
| Baty, Florent et al. (2013) EGFR Exon-Level Biomarkers of the Response to Bevacizumab/Erlotinib in Non-Small Cell Lung Cancer.; PLoS One, 8: e72966 |
|
GSE37138 |
| Baty, Florent et al. (2013) Exploring the transcription factor activity in high-throughput gene expression data using RLQ analysis.; BMC Bioinformatics, 14: 178 |
|
GSE30242 |
| Baudry, Anne et al. (2006) PKBalpha is required for adipose differentiation of mouse embryonic fibroblasts.; J Cell Sci, 119: 889-97 |
|
GSE2746 |
| Bauer, Alison K et al. (2011) Identification of candidate genes downstream of TLR4 signaling after ozone exposure in mice: a role for heat-shock protein 70.; Environ Health Perspect, 119: 1091-7 |
|
GSE20715 |
| Bauer, Joshua A et al. (2010) Identification of markers of taxane sensitivity using proteomic and genomic analyses of breast tumors from patients receiving neoadjuvant paclitaxel and radiation.; Clin Cancer Res, 16: 681-90 |
|
GSE22513 |
| Bauer, Kylynda C et al. (2022) Gut microbes shape microglia and cognitive function during malnutrition.; Glia, 70: 820-841 |
|
GSE138182 |
| Bauer, Omri et al. (2015) Loss of osteoblast Runx3 produces severe congenital osteopenia.; Mol Cell Biol, 35: 1097-109 |
|
GSE57195 |
| Bauer, Susanne et al. (2022) Translatome profiling in fatal familial insomnia implicates TOR signaling in somatostatin neurons.; Life Sci Alliance, 5: [no pages] |
|
GSE198063 |
| Bauer, Susanne et al. (2023) Cerebellar granule neurons induce Cyclin D1 before the onset of motor symptoms in Huntington's disease mice.; Acta Neuropathol Commun, 11: 17 |
|
GSE199837 |
| Bauer, Yasmina et al. (2011) Identification of cathepsin L as a potential sex-specific biomarker for renal damage.; Hypertension, 57: 795-801 |
|
GSE19058 |
| Baum, T B et al. (2024) Patient mutations in DRP1 perturb synaptic maturation of cortical neurons.; bioRxiv, [no vol.]: [no pages] |
|
GSE296512 |
| Baumann, Valentin et al. (2019) Targeted removal of epigenetic barriers during transcriptional reprogramming.; Nat Commun, 10: 2119 |
|
GSE119480 |
| Baumel-Alterzon, Sharon et al. (2024) NRF2 is required for neonatal mouse beta cell growth by maintaining redox balance and promoting mitochondrial biogenesis and function.; Diabetologia, 67: 547-560 |
|
GSE242718 |
| Baumgartner, Marybeth et al. (2018) Minor spliceosome inactivation causes microcephaly, owing to cell cycle defects and death of self-amplifying radial glial cells.; Development, 145: [no pages] |
|
GSE96616 |
| Bavykina, Viktoriia et al. (2023) Tracking the progression of Alzheimer’s disease with peripheral blood monocytes; bioRxiv, [no vol.]: [no pages] |
|
GSE216918 |
| Baxan, Nicoleta et al. (2024) Deep phenotyping the right ventricle to establish translational MRI biomarkers for characterization of adaptive and maladaptive states in pulmonary hypertension.; Sci Rep, 14: 29774 |
|
GSE273007 |
| Bayam, Efil et al. (2024) Bi-allelic variants in WDR47 cause a complex neurodevelopmental syndrome.; EMBO Mol Med, 17: 129-168 |
|
GSE247160 |
| Bayer, Hanna et al. (2017) ALS-causing mutations differentially affect PGC-1? expression and function in the brain vs. peripheral tissues.; Neurobiol Dis, 97: 36-45 |
|
GSE77919 |
| Bayliss, Jill et al. (2016) Lowered H3K27me3 and DNA hypomethylation define poorly prognostic pediatric posterior fossa ependymomas.; Sci Transl Med, 8: 366ra161 |
|
GSE89448 |
| Bayram-Weston, Zubeyde et al. (2015) Similar striatal gene expression profiles in the striatum of the YAC128 and HdhQ150 mouse models of Huntington's disease are not reflected in mutant Huntingtin inclusion prevalence.; BMC Genomics, 16: 1079 |
|
GSE70656 |
| Bazzi, Sam A et al. (2023) Alcohol induces concentration-dependent transcriptomic changes in oligodendrocytes.; bioRxiv, [no vol.]: [no pages] |
|
GSE239691 |
| Beagan, Jonathan A et al. (2016) Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming.; Cell Stem Cell, 18: 611-24 |
|
GSE68582 |
| Beak, Jin-Ah et al. (2022) FK506 and Lactobacillus acidophilus ameliorate acute graft-versus-host disease by modulating the T helper 17/regulatory T-cell balance.; J Transl Med, 20: 104 |
|
GSE174214 |
| Bean, C et al. (2014) Ankrd2 is a modulator of NF-?B-mediated inflammatory responses during muscle differentiation.; Cell Death Dis, 5: e1002 |
|
GSE43500 |
| Beane, Jennifer et al. (2012) SIRT1 pathway dysregulation in the smoke-exposed airway epithelium and lung tumor tissue.; Cancer Res, 72: 5702-11 |
|
GSE37058 |