List of all 17,701 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Belzeaux, R et al. (2012) Responder and nonresponder patients exhibit different peripheral transcriptional signatures during major depressive episode.; Transl Psychiatry, 2: e185 |
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GSE38206 |
| Belzeaux, Raoul et al. (2020) GPR56/ADGRG1 is associated with response to antidepressant treatment.; Nat Commun, 11: 1635 |
|
GSE146446 |
| Ben Abdallah, Hakim et al. (2023) Heat shock protein 90 inhibition attenuates inflammation in models of atopic dermatitis: a novel mechanism of action.; Front Immunol, 14: 1289788 |
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GSE246569 |
| Ben Amar, Dounia et al. (2022) Environmental cues from neural crest derivatives act as metastatic triggers in an embryonic neuroblastoma model.; Nat Commun, 13: 2549 |
|
GSE169280 |
| Ben-Ami, Oren et al. (2013) Addiction of t(8;21) and inv(16) acute myeloid leukemia to native RUNX1.; Cell Rep, 4: 1131-43 |
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GSE45743 |
| Ben-Shachar, Shay et al. (2009) Mouse models of MeCP2 disorders share gene expression changes in the cerebellum and hypothalamus.; Hum Mol Genet, 18: 2431-42 |
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GSE15574 |
| Ben-Tov Perry, Rotem et al. (2023) Silc1 long noncoding RNA is an immediate-early gene promoting efficient memory formation.; Cell Rep, 42: 113168 |
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GSE216643.2 |
| Ben-Zvi, Ayal et al. (2014) Mfsd2a is critical for the formation and function of the blood-brain barrier.; Nature, 509: 507-11 |
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GSE56777 |
| Benabdallah, Nezha S et al. (2023) Aberrant gene activation in synovial sarcoma relies on SSX specificity and increased PRC1.1 stability.; Nat Struct Mol Biol, 30: 1640-1652 |
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GSE233376 |
| Benam, Kambez H et al. (2016) Matched-Comparative Modeling of Normal and Diseased Human Airway Responses Using a Microengineered Breathing Lung Chip.; Cell Syst, 3: 456-466.e4 |
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GSE87098 |
| Benatti, Paolo et al. (2016) NF-Y activates genes of metabolic pathways altered in cancer cells.; Oncotarget, 7: 1633-50 |
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GSE70543 |
| Bender, A et al. (2008) Creatine improves health and survival of mice.; Neurobiol Aging, [no vol.]: [no pages] |
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GSE5140 |
| Bender, Ambre et al. (2025) UHRF2 mediates resistance to DNA methylation reprogramming in primordial germ cells.; Nat Commun, 16: 7350 |
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GSE240967 GSE240968 |
| Bender, Sebastian et al. (2013) Reduced H3K27me3 and DNA hypomethylation are major drivers of gene expression in K27M mutant pediatric high-grade gliomas.; Cancer Cell, 24: 660-72 |
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GSE49822 |
| Benedet, Tomaso et al. (2017) Transcriptional repressor DREAM regulates trigeminal noxious perception.; J Neurochem, 141: 544-552 |
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GSE69619 |
| Benedicto, Ignacio et al. (2017) Concerted regulation of retinal pigment epithelium basement membrane and barrier function by angiocrine factors.; Nat Commun, 8: 15374 |
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GSE95835 |
| Benekareddy, Madhurima et al. (2010) Enhanced function of prefrontal serotonin 5-HT(2) receptors in a rat model of psychiatric vulnerability.; J Neurosci, 30: 12138-50 |
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GSE14720 |
| Benevento, Marco et al. (2016) Histone Methylation by the Kleefstra Syndrome Protein EHMT1 Mediates Homeostatic Synaptic Scaling.; Neuron, 91: 341-55 |
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GSE68960 |
| Benezeder, Theresa et al. (2020) Dithranol targets keratinocytes, their crosstalk with neutrophils and inhibits the IL-36 inflammatory loop in psoriasis.; Elife, 9: [no pages] |
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GSE145126 |
| Bengson, Emily F et al. (2023) Quantitative omics analyses of NCOA4 deficiency reveal an integral role of ferritinophagy in iron homeostasis of hippocampal neuronal HT22 cells.; Front Nutr, 10: 1054852 |
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GSE211931 |
| Benis, Nirupama et al. (2017) Multi-Level Integration of Environmentally Perturbed Internal Phenotypes Reveals Key Points of Connectivity between Them.; Front Physiol, 8: 388 |
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GSE84442 |
| Benitez, Cecil M et al. (2014) An integrated cell purification and genomics strategy reveals multiple regulators of pancreas development.; PLoS Genet, 10: e1004645 |
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GSE54374 |
| Benitez, Jorge A et al. (2021) PTEN deficiency leads to proteasome addiction: a novel vulnerability in glioblastoma.; Neuro Oncol, 23: 1072-1086 |
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GSE163906 |
| Benito, Eva et al. (2015) HDAC inhibitor-dependent transcriptome and memory reinstatement in cognitive decline models.; J Clin Invest, 125: 3572-84 |
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GSE63943 |
| Benito, Rocío et al. (2012) Imatinib therapy of chronic myeloid leukemia restores the expression levels of key genes for DNA damage and cell-cycle progression.; Pharmacogenet Genomics, 22: 381-8 |
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GSE33075 |
| Benito-Kwiecinski, Silvia et al. (2021) An early cell shape transition drives evolutionary expansion of the human forebrain.; Cell, 184: 2084-2102.e19 |
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GSE153076.1 |
| Benjamin, Joel S et al. (2017) A ketogenic diet rescues hippocampal memory defects in a mouse model of Kabuki syndrome.; Proc Natl Acad Sci U S A, 114: 125-130 |
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GSE90836 |
| Benkert, Thomas F et al. (2012) Natalizumab exerts direct signaling capacity and supports a pro-inflammatory phenotype in some patients with multiple sclerosis.; PLoS One, 7: e52208 |
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GSE37783 |
| Benn, Caroline L et al. (2005) Contribution of nuclear and extranuclear polyQ to neurological phenotypes in mouse models of Huntington's disease.; Hum Mol Genet, 14: 3065-78 |
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GSE3248 |
| Bennett, Christina N et al. (2012) Cross-species genomic and functional analyses identify a combination therapy using a CHK1 inhibitor and a ribonucleotide reductase inhibitor to treat triple-negative breast cancer.; Breast Cancer Res, 14: R109 |
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GSE25487 GSE25488 |
| Bennett, John A et al. (2018) Conditional deletion of Ahr alters gene expression profiles in hematopoietic stem cells.; PLoS One, 13: e0206407 |
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GSE76276 |
| Bennis, A et al. (2017) Stem Cell Derived Retinal Pigment Epithelium: The Role of Pigmentation as Maturation Marker and Gene Expression Profile Comparison with Human Endogenous Retinal Pigment Epithelium.; Stem Cell Rev Rep, 13: 659-669 |
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GSE85907 |
| Bennis, Anna et al. (2015) Comparison of Mouse and Human Retinal Pigment Epithelium Gene Expression Profiles: Potential Implications for Age-Related Macular Degeneration.; PLoS One, 10: e0141597 |
|
GSE66916 |
| Bennis, Anna et al. (2017) Comparative gene expression study and pathway analysis of the human iris- and the retinal pigment epithelium.; PLoS One, 12: e0182983 |
|
GSE81058 |
| Benoit, Courtney R et al. (2025) POU3F2 regulates canonical Wnt signalling via SOX13 and ADNP to expand the neural progenitor population.; Brain, [no vol.]: [no pages] |
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GSE294199 GSE294377 GSE294380 GSE294370 |
| Benoit, Marie E et al. (2011) Complement protein C1q-mediated neuroprotection is correlated with regulation of neuronal gene and microRNA expression.; J Neurosci, 31: 3459-69 |
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GSE18860 |
| Benoit, Marie E et al. (2013) C1q-induced LRP1B and GPR6 proteins expressed early in Alzheimer disease mouse models, are essential for the C1q-mediated protection against amyloid-? neurotoxicity.; J Biol Chem, 288: 654-65 |
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GSE28886 |
| Benoit, Simon et al. (2023) Strain-specific changes in nucleus accumbens transcriptome and motivation for palatable food reward in mice exposed to maternal separation.; Front Nutr, 10: 1190392 |
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GSE222780 GSE222777 GSE222779 |
| Benraiss, Abdellatif et al. (2021) Cell-intrinsic glial pathology is conserved across human and murine models of Huntington's disease.; Cell Rep, 36: 109308 |
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GSE154128 GSE154131 |
| Benraiss, Abdellatif et al. (2022) A TCF7L2-responsive suppression of both homeostatic and compensatory remyelination in Huntington disease mice.; Cell Rep, 40: 111291 |
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GSE181370 |
| Bensalel, Johanna et al. (2021) RNA-seq analysis reveals significant transcriptome changes in huntingtin-null human neuroblastoma cells.; BMC Med Genomics, 14: 176 |
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GSE178467 |
| Bensellam, M et al. (2009) Cluster analysis of rat pancreatic islet gene mRNA levels after culture in low-, intermediate- and high-glucose concentrations.; Diabetologia, [no vol.]: [no pages] |
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GSE12817 |
| Benton, Cristina S et al. (2012) Evaluating genetic markers and neurobiochemical analytes for fluoxetine response using a panel of mouse inbred strains.; Psychopharmacology (Berl), 221: 297-315 |
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GSE28644 |
| Bentsen, Marie A et al. (2020) Transcriptomic analysis links diverse hypothalamic cell types to fibroblast growth factor 1-induced sustained diabetes remission.; Nat Commun, 11: 4458 |
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GSE153549 |
| Benvegnù, Stefano et al. (2011) Developmental influence of the cellular prion protein on the gene expression profile in mouse hippocampus.; Physiol Genomics, 43: 711-25 |
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GSE21718 |
| Berasain, Lara et al. (2024) Accelerated evolution in the human lineage led to gain and loss of transcriptional enhancers in theRBFOX1locus.; Sci Adv, 10: eadl1049 |
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GSE242503 GSE242502 |
| Berchtold, Nicole C et al. (2008) Gene expression changes in the course of normal brain aging are sexually dimorphic.; Proc Natl Acad Sci U S A, 105: 15605-10 |
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GSE11882 GSE48350 |
| Berdal, Jan-Erik et al. (2011) Excessive innate immune response and mutant D222G/N in severe A (H1N1) pandemic influenza.; J Infect, [no vol.]: [no pages] |
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GSE27131 |
| Berdiel-Acer, Mireia et al. (2011) Hepatic carcinoma-associated fibroblasts promote an adaptative response in colorectal cancer cells that inhibit proliferation and apoptosis: nonresistant cells die by nonapoptotic cell death.; Neoplasia, 13: 931-46 |
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GSE46824 |
| Berenguer, Marie et al. (2025) Retinoic acid-regulated epigenetic marks identifyAlx1as a direct target gene required for optic cup formation.; bioRxiv, [no vol.]: [no pages] |
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GSE297809 |
| Berenjeno, Inmaculada M et al. (2008) Identification of the Rock-dependent transcriptome in rodent fibroblasts.; Clin Transl Oncol, 10: 726-38 |
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GSE5913 |
| Berezovsky, Artem D et al. (2014) Sox2 promotes malignancy in glioblastoma by regulating plasticity and astrocytic differentiation.; Neoplasia, 16: 193-206, 206.e19-25 |
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GSE51441 |
| Berg, Daniel A et al. (2019) A Common Embryonic Origin of Stem Cells Drives Developmental and Adult Neurogenesis.; Cell, 177: 654-668.e15 |
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GSE125315 |
| Berg, Daniel J et al. (2019) Transcriptomic Signatures of Postnatal and Adult Intrinsically Photosensitive Ganglion Cells.; eNeuro, 6: [no pages] |
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GSE118780 |
| Berg, Tracy J et al. (2021) The Irradiated Brain Microenvironment Supports Glioma Stemness and Survival via Astrocyte-Derived Transglutaminase 2.; Cancer Res, 81: 2101-2115 |
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GSE145941 |
| Bergen, Andrew W et al. (2012) Chronic psychosocial stressors and salivary biomarkers in emerging adults.; Psychoneuroendocrinology, 37: 1158-70 |
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GSE40013 |
| Berger, Alvin et al. (2002) Dietary effects of arachidonate-rich fungal oil and fish oil on murine hepatic and hippocampal gene expression.; Lipids Health Dis, 1: 2 |
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GSE91 |
| Berger, Carole et al. (2010) Rapid generation of maturationally synchronized human dendritic cells: contribution to the clinical efficacy of extracorporeal photochemotherapy.; Blood, 116: 4838-47 |
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GSE23604 |
| Berger, Michael F et al. (2010) Integrative analysis of the melanoma transcriptome.; Genome Res, 20: 413-27 |
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GSE20156 |
| Berger, Penny L et al. (2017) Miz1, a Novel Target of ING4, Can Drive Prostate Luminal Epithelial Cell Differentiation.; Prostate, 77: 49-59 |
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GSE77460 |
| Berger, Stefanie et al. (2020) Severe hydroxymethylbilane synthase deficiency causes depression-like behavior and mitochondrial dysfunction in a mouse model of homozygous dominant acute intermittent porphyria.; Acta Neuropathol Commun, 8: 38 |
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GSE146212 |
| Berger, Toni C et al. (2020) Differential Glial Activation in Early Epileptogenesis-Insights From Cell-Specific Analysis of DNA Methylation and Gene Expression in the Contralateral Hippocampus.; Front Neurol, 11: 573575 |
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GSE153976 |
| Berglund, Lucinda J et al. (2013) IL-21 signalling via STAT3 primes human naive B cells to respond to IL-2 to enhance their differentiation into plasmablasts.; Blood, 122: 3940-50 |
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GSE51587 |
| Berglund, Rasmus et al. (2020) Microglial autophagy-associated phagocytosis is essential for recovery from neuroinflammation.; Sci Immunol, 5: [no pages] |
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GSE154920 |
| Bergsland, Maria et al. (2011) Sequentially acting Sox transcription factors in neural lineage development.; Genes Dev, 25: 2453-64 |
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GSE33061 GSE33060 |
| Berisha, Stela Z et al. (2011) Changes in whole blood gene expression in obese subjects with type 2 diabetes following bariatric surgery: a pilot study.; PLoS One, 6: e16729 |
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GSE19790 |
| Berkofsky-Fessler, Windy et al. (2009) Preclinical biomarkers for a cyclin-dependent kinase inhibitor translate to candidate pharmacodynamic biomarkers in phase I patients.; Mol Cancer Ther, 8: 2517-25 |
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GSE15396 |
| Berman, Robert F et al. (2025) GFAP mutation and astrocyte dysfunction lead to a neurodegenerative profile with impaired synaptic plasticity and cognitive deficits in a rat model of Alexander disease.; eNeuro, 12: [no pages] |
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GSE278645 |
| Bermejo-Martin, Jesus F et al. (2010) Host adaptive immunity deficiency in severe pandemic influenza.; Crit Care, 14: R167 |
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GSE21802 |
| Bermejo-Álvarez, P et al. (2015) Tet-mediated imprinting erasure in H19 locus following reprogramming of spermatogonial stem cells to induced pluripotent stem cells.; Sci Rep, 5: 13691 |
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GSE64856 |
| Bermingham, Emma N et al. (2013) Post-weaning selenium and folate supplementation affects gene and protein expression and global DNA methylation in mice fed high-fat diets.; BMC Med Genomics, 6: 7 |
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GSE43038 |
| Bermudez, Yahaira et al. (2023) Nonstructural protein 1 widespread RNA decay phenotype varies among coronaviruses.; iScience, 26: 105887 |
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GSE217848 |
| Bermúdez, Mei-Ling et al. (2018) Intranasal carnosine attenuates transcriptomic alterations and improves mitochondrial function in the Thy1-aSyn mouse model of Parkinson's disease.; Mol Genet Metab, 125: 305-313 |
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GSE115769 |
| Bermúdez-Muñoz, Jose M et al. (2021) Dual-Specificity Phosphatase 1 (DUSP1) Has a Central Role in Redox Homeostasis and Inflammation in the Mouse Cochlea.; Antioxidants (Basel), 10: [no pages] |
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GSE176114 |
| Bernabò, Paola et al. (2017) In Vivo Translatome Profiling in Spinal Muscular Atrophy Reveals a Role for SMN Protein in Ribosome Biology.; Cell Rep, 21: 953-965 |
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GSE102204 |
| Bernal, Mónica et al. (2012) Genome-wide differential genetic profiling characterizes colorectal cancers with genetic instability and specific routes to HLA class I loss and immune escape.; Cancer Immunol Immunother, 61: 803-16 |
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GSE27544 |
| Bernard-Valnet, Raphaël et al. (2022) Influenza vaccination induces autoimmunity against orexinergic neurons in a mouse model for narcolepsy.; Brain, 145: 2018-2030 |
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GSE195600 |
| Bernardini, Camilla et al. (2012) Genome-wide gene expression profiling of human narcolepsy.; Gene Expr, 15: 171-81 |
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GSE21592 |
| Bernardini, Camilla et al. (2013) Mitochondrial network genes in the skeletal muscle of amyotrophic lateral sclerosis patients.; PLoS One, 8: e57739 |
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GSE41414 |
| Bernardo, G M et al. (2013) FOXA1 represses the molecular phenotype of basal breast cancer cells.; Oncogene, [no vol.]: [no pages] |
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GSE31003 |
| Berndt, Nicole et al. (2021) Photosensitivity and cGAS-dependent type I IFN activation in lupus patients with TREX1 deficiency.; J Invest Dermatol, [no vol.]: [no pages] |
|
GSE169244 |
| Bernhardt, Celine et al. (2022) KLF9 and KLF13 transcription factors boost myelin gene expression in oligodendrocytes as partners of SOX10 and MYRF.; Nucleic Acids Res, 50: 11509-11528 |
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GSE212736 |
| Bernhardt, Vipa et al. (2011) Tracheal occlusion conditioning in conscious rats modulates gene expression profile of medial thalamus.; Front Physiol, 2: 24 |
|
GSE25152 |
| Bernhardt, Vipa et al. (2011) Tracheal occlusion modulates the gene expression profile of the medial thalamus in anesthetized rats.; J Appl Physiol (1985), 111: 117-24 |
|
GSE25153 |
| Bernier, Michel et al. (2013) Antitumor activity of (R,R')-4-methoxy-1-naphthylfenoterol in a rat C6 glioma xenograft model in the mouse.; Pharmacol Res Perspect, 1: e00010 |
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GSE45307 |
| Bernt, Kathrin M et al. (2011) MLL-rearranged leukemia is dependent on aberrant H3K79 methylation by DOT1L.; Cancer Cell, 20: 66-78 |
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GSE25911 |
| Bero, Adam W et al. (2014) Early remodeling of the neocortex upon episodic memory encoding.; Proc Natl Acad Sci U S A, 111: 11852-7 |
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GSE58510 |
| Beronja, Slobodan et al. (2013) RNAi screens in mice identify physiological regulators of oncogenic growth.; Nature, 501: 185-90 |
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GSE48480 |
| Berquez, Marine et al. (2023) Lysosomal cystine export regulates mTORC1 signaling to guide kidney epithelial cell fate specialization.; Nat Commun, 14: 3994 |
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GSE226397.1 |