List of all 21,851 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Beane, Jennifer et al. (2007) Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression.; Genome Biol, 8: R201 |
|
GSE7895 |
| Beane, Jennifer et al. (2011) Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq.; Cancer Prev Res (Phila), 4: 803-17 |
|
GSE29006 |
| Bearoff, F et al. (2016) Natural genetic variation profoundly regulates gene expression in immune cells and dictates susceptibility to CNS autoimmunity.; Genes Immun, 17: 386-395 |
|
GSE85418 |
| Beasley, Georgia M et al. (2011) Prospective multicenter phase II trial of systemic ADH-1 in combination with melphalan via isolated limb infusion in patients with advanced extremity melanoma.; J Clin Oncol, 29: 1210-5 |
|
GSE22968 |
| Beatty, S C et al. (2016) Survival analysis and microarray profiling identify Cd40 as a candidate for the Salmonella susceptibility locus, Ity5.; Genes Immun, 17: 19-29 |
|
GSE65893 |
| Beauchamp, Marie-Claude et al. (2021) Mutation in Eftud2 causes craniofacial defects in mice via mis-splicing of Mdm2 and increased P53.; Hum Mol Genet, 30: 739-757 |
|
GSE157356 |
| Beaudry, Annie et al. (2023) Repurposing disulfiram, an alcohol-abuse drug, in neuroblastoma causes KAT2A downregulation and in vivo activity with a water/oil emulsion.; Sci Rep, 13: 16443 |
|
GSE226162 |
| Beaumont, Vahri et al. (2016) Phosphodiesterase 10A Inhibition Improves Cortico-Basal Ganglia Function in Huntington's Disease Models.; Neuron, 92: 1220-1237 |
|
GSE89505 |
| Beaver, Laura M et al. (2014) Transcriptome analysis reveals a dynamic and differential transcriptional response to sulforaphane in normal and prostate cancer cells and suggests a role for Sp1 in chemoprevention.; Mol Nutr Food Res, 58: 2001-13 |
|
GSE48812 |
| Bebelman, Maarten P et al. (2024) Hepatocyte differentiation requires anisotropic expansion of bile canaliculi.; Development, 151: [no pages] |
|
GSE278503 |
| Becanovic, Kristina et al. (2010) Transcriptional changes in Huntington disease identified using genome-wide expression profiling and cross-platform analysis.; Hum Mol Genet, 19: 1438-52 |
|
GSE18551 GSE19676 |
| Beck, David B et al. (2020) Linkage-specific deubiquitylation by OTUD5 defines an embryonic pathway intolerant to genomic variation.; Sci Adv, 7: [no pages] |
|
GSE160589 |
| Becker, Kolja et al. (2022) Transcriptome analysis of AAV-induced retinopathy models expressing human VEGF, TNF-α, and IL-6 in murine eyes.; Sci Rep, 12: 19395 |
|
GSE200191 GSE200195 |
| Becker, Léa J et al. (2023) The basolateral amygdala-anterior cingulate pathway contributes to depression-like behaviors and comorbidity with chronic pain behaviors in male mice.; Nat Commun, 14: 2198 |
|
GSE227159 |
| Becker, Maike et al. (2025) Regulatory T cells in the mouse hypothalamus control immune activation and ameliorate metabolic impairments in high-calorie environments.; Nat Commun, 16: 2744 |
|
GSE282067 |
| Becker, Marc A et al. (2016) Insulin Receptor Substrate Adaptor Proteins Mediate Prognostic Gene Expression Profiles in Breast Cancer.; PLoS One, 11: e0150564 |
|
GSE78916 |
| Becker, Marc A et al. (2016) Ridaforolimus (MK-8669) synergizes with Dalotuzumab (MK-0646) in hormone-sensitive breast cancer.; BMC Cancer, 16: 814 |
|
GSE79492 |
| Becker, Stephan T et al. (2012) Peri-Implantitis versus Periodontitis: Functional Differences Indicated by Transcriptome Profiling.; Clin Implant Dent Relat Res, [no vol.]: [no pages] |
|
GSE33774 |
| Beckervordersandforth, Ruth et al. (2010) In vivo fate mapping and expression analysis reveals molecular hallmarks of prospectively isolated adult neural stem cells.; Cell Stem Cell, 7: 744-58 |
|
GSE18765 |
| Becknell, Brian et al. (2013) Molecular basis of renal adaptation in a murine model of congenital obstructive nephropathy.; PLoS One, 8: e72762 |
|
GSE48041 |
| Becktel, Danielle A et al. (2022) Repeated Administration of 2-Hydroxypropyl-β-Cyclodextrin (HPβCD) Attenuates the Chronic Inflammatory Response to Experimental Stroke.; J Neurosci, 42: 325-348 |
|
GSE173713 GSE173544 GSE173714 |
| Bedford, Logan M et al. (2025) Alzheimer's disease-associated PLCG2 variants alter microglial state and function in human induced pluripotent stem cell-derived microglia-like cells.; Alzheimers Dement, 21: e70772 |
|
GSE308813 |
| Bednarczyk, Monika et al. (2022) β2 Integrins on Dendritic Cells Modulate Cytokine Signaling and Inflammation-Associated Gene Expression, and Are Required for Induction of Autoimmune Encephalomyelitis.; Cells, 11: [no pages] |
|
GSE203448 |
| Bedogni, Francesco et al. (2010) Tbr1 regulates regional and laminar identity of postmitotic neurons in developing neocortex.; Proc Natl Acad Sci U S A, 107: 13129-34 |
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GSE22371.2 GSE22371.1 |
| Bedolla, Diana E et al. (2011) A component of retinal light adaptation mediated by the thyroid hormone cascade.; PLoS One, 6: e26334 |
|
GSE29299 |
| Bedrosian, Tracy A et al. (2021) Lamin B1 decline underlies age-related loss of adult hippocampal neurogenesis.; EMBO J, 40: e105819 |
|
GSE156156 |
| Beech, R D et al. (2013) Gene-expression differences in peripheral blood between lithium responders and non-responders in the Lithium Treatment-Moderate dose Use Study (LiTMUS).; Pharmacogenomics J, [no vol.]: [no pages] |
|
GSE45484 |
| Beech, Robert D et al. (2010) Increased peripheral blood expression of electron transport chain genes in bipolar depression.; Bipolar Disord, 12: 813-24 |
|
GSE23848 |
| Beerlage, Christiane et al. (2013) Hypoxia-inducible factor 1-regulated lysyl oxidase is involved in Staphylococcus aureus abscess formation.; Infect Immun, 81: 2562-73 |
|
GSE44943 |
| Begun, Jakob et al. (2015) Integrated Genomics of Crohn's Disease Risk Variant Identifies a Role for CLEC12A in Antibacterial Autophagy.; Cell Rep, 11: 1905-18 |
|
GSE69132 |
| Behera, Amit K et al. (2019) Functional interplay between YY1 and CARM1 promotes oral carcinogenesis.; Oncotarget, 10: 3709-3724 |
|
GSE125317 |
| Beheshti, Afshin et al. (2013) Age and space irradiation modulate tumor progression: implications for carcinogenesis risk.; Radiat Res, 179: 208-20 |
|
GSE45606 |
| Beheshti, Afshin et al. (2014) Proton irradiation augments the suppression of tumor progression observed with advanced age.; Radiat Res, 181: 272-83 |
|
GSE45609 |
| Behnan, Jinan et al. (2017) Identification and characterization of a new source of adult human neural progenitors.; Cell Death Dis, 8: e2991 |
|
GSE89201 |
| Behrangi, Newshan et al. (2022) Siponimod ameliorates metabolic oligodendrocyte injury via the sphingosine-1 phosphate receptor 5.; Proc Natl Acad Sci U S A, 119: e2204509119 |
|
GSE213374 |
| Behrendt, Rayk et al. (2013) Mouse SAMHD1 has antiretroviral activity and suppresses a spontaneous cell-intrinsic antiviral response.; Cell Rep, 4: 689-96 |
|
GSE41879 GSE45358 |
| Behrens, Kira et al. (2016) Runx1 downregulates stem cell and megakaryocytic transcription programs that support niche interactions.; Blood, 127: 3369-81 |
|
GSE81181 GSE81177 |
| Behrmann, Catherine A et al. (2024) Coordinated Targeting of S6K1/2 and AXL Disrupts Pyrimidine Biosynthesis in PTEN-Deficient Glioblastoma.; Cancer Res Commun, 4: 2215-2227 |
|
GSE196591 |
| Behura, Susanta K et al. (2019) Evidence for functional interactions between the placenta and brain in pregnant mice.; FASEB J, 33: 4261-4272 |
|
GSE121799 |
| Beier, Ulf H et al. (2012) Histone deacetylases 6 and 9 and sirtuin-1 control Foxp3+ regulatory T cell function through shared and isoform-specific mechanisms.; Sci Signal, 5: ra45 |
|
GSE26425 |
| Beierle, Jacob A et al. (2022) Genetic basis of thermal nociceptive sensitivity and brain weight in a BALB/c reduced complexity cross.; Mol Pain, 18: 17448069221079540 |
|
GSE196334 GSE196302 GSE196352 |
| Beins, Eva et al. (2016) Characterization of inflammatory markers and transcriptome profiles of differentially activated embryonic stem cell-derived microglia.; Glia, 64: 1007-20 |
|
GSE77064 GSE77062 GSE70383 |
| Beiting, Daniel P et al. (2015) The Orphan Nuclear Receptor TLX Is an Enhancer of STAT1-Mediated Transcription and Immunity to Toxoplasma gondii.; PLoS Biol, 13: e1002200 |
|
GSE55749 GSE55750 |
| Beitzinger, Michaela et al. (2008) p73 poses a barrier to malignant transformation by limiting anchorage-independent growth.; EMBO J, 27: 792-803 |
|
GSE7201 |
| Bejaoui, Meriem et al. (2021) Regulating cell fate of human amnion epithelial cells using natural compounds: an example of enhanced neural and pigment differentiation by 3,4,5-tri-O-caffeoylquinic acid.; Cell Commun Signal, 19: 26 |
|
GSE153617 |
| Bekenstein, Uriya et al. (2017) Dynamic changes in murine forebrain miR-211 expression associate with cholinergic imbalances and epileptiform activity.; Proc Natl Acad Sci U S A, 114: E4996-E5005 |
|
GSE99307 |
| Belair-Hickey, Justin J. et al. (2024) <i>Sox15</i> is a novel retinal developmental gene that promotes cone photoreceptor differentiation through inhibition of alternative rod photoreceptor fates; bioRxiv, [no vol.]: [no pages] |
|
GSE283880 |
| Belal, Sophie et al. (2022) Glutamate-Induced Deregulation of Krebs Cycle in Mitochondrial Encephalopathy Lactic Acidosis Syndrome Stroke-Like Episodes (MELAS) Syndrome Is Alleviated by Ketone Body Exposure.; Biomedicines, 10: [no pages] |
|
GSE165953 |
| Belenki, Dimitri et al. (2025) Senescence-associated lineage-aberrant plasticity evokes T-cell-mediated tumor control.; Nat Commun, 16: 3079 |
|
GSE224948 |
| Belfiori, Lautaro Francisco et al. (2024) Nigral transcriptomic profiles in Engrailed-1 hemizygous mouse models of Parkinson's disease reveal upregulation of oxidative phosphorylation-related genes associated with delayed dopaminergic neurodegeneration.; Front Aging Neurosci, 16: 1337365 |
|
GSE236461 |
| Belgard, T Grant et al. (2011) A transcriptomic atlas of mouse neocortical layers.; Neuron, 71: 605-16 |
|
GSE27243 |
| Belhaj, Imen et al. (2026) Lactate treatment improves brain biochemistry and cognitive function in transgenic Alzheimer's and wild-type mice.; Sci Rep, 16: [no pages] |
|
GSE276471 |
| Belhocine, Sarah et al. (2022) Context-dependent transcriptional regulation of microglial proliferation.; Glia, 70: 572-589 |
|
GSE166236 |
| Beliakova-Bethell, Nadejda et al. (2014) Maraviroc intensification in patients with suppressed HIV viremia has limited effects on CD4+ T cell recovery and gene expression.; Antiviral Res, 107: 42-9 |
|
GSE56804 |
| Beliakova-Bethell, Nadejda et al. (2014) The effect of cell subset isolation method on gene expression in leukocytes.; Cytometry A, 85: 94-104 |
|
GSE50008 |
| Belin, Sophie et al. (2019) Neuregulin 1 type III improves peripheral nerve myelination in a mouse model of congenital hypomyelinating neuropathy.; Hum Mol Genet, 28: 1260-1273 |
|
GSE101808 |
| Belitskaya-Lévy, Ilana et al. (2011) Characterization of a genomic signature of pregnancy identified in the breast.; Cancer Prev Res (Phila), 4: 1457-64 |
|
GSE30010 |
| Bell, Catherine C et al. (2017) Transcriptional, Functional, and Mechanistic Comparisons of Stem Cell-Derived Hepatocytes, HepaRG Cells, and Three-Dimensional Human Hepatocyte Spheroids as Predictive In Vitro Systems for Drug-Induced Liver Injury.; Drug Metab Dispos, 45: 419-429 |
|
GSE93840 |
| Bell, Luisa et al. (2025) ApoE4 disrupts intracellular trafficking and iron homeostasis in a reproducible iPSC-based model of human brain endothelial cells.; Stem Cell Reports, 20: 102607 |
|
GSE296358 GSE296377 |
| Bell, Oliver H et al. (2019) Single Eye mRNA-Seq Reveals Normalisation of the Retinal Microglial Transcriptome Following Acute Inflammation.; Front Immunol, 10: 3033 |
|
GSE138247 |
| Bell, Richard L et al. (2009) Gene expression changes in the nucleus accumbens of alcohol-preferring rats following chronic ethanol consumption.; Pharmacol Biochem Behav, 94: 131-47 |
|
GSE13524 |
| Bell, Robert D et al. (2014) Identification and initial functional characterization of a human vascular cell-enriched long noncoding RNA.; Arterioscler Thromb Vasc Biol, 34: 1249-59 |
|
GSE51878 |
| Bell, Ryan A.V. et al. (2019) Chromatin reorganization during myoblast differentiation involves the caspase-dependent removal of SATB2; bioRxiv, [no vol.]: [no pages] |
|
GSE148193 |
| Bell, Scott et al. (2018) Disruption of GRIN2B Impairs Differentiation in Human Neurons.; Stem Cell Reports, 11: 183-196 |
|
GSE114685 |
| Bellacosa, Alfonso et al. (2010) Altered gene expression in morphologically normal epithelial cells from heterozygous carriers of BRCA1 or BRCA2 mutations.; Cancer Prev Res (Phila), 3: 48-61 |
|
GSE19383 |
| Bellassen, Laura et al. (2025) The immune receptor SLAMF5 regulates myeloid-cell mediated neuroinflammation in multiple sclerosis.; PLoS Biol, 23: e3003373 |
|
GSE306091 |
| Bellesi, Michele et al. (2013) Effects of sleep and wake on oligodendrocytes and their precursors.; J Neurosci, 33: 14288-300 |
|
GSE48369 |
| Bellesi, Michele et al. (2015) Effects of sleep and wake on astrocytes: clues from molecular and ultrastructural studies.; BMC Biol, 13: 66 |
|
GSE69079 |
| Bellet, Marina M et al. (2013) Circadian clock regulates the host response to Salmonella.; Proc Natl Acad Sci U S A, 110: 9897-902 |
|
GSE46356 |
| Bellfy, Lauren et al. (2023) The clock gene Per1 may exert diurnal control over hippocampal memory consolidation.; Neuropsychopharmacology, 48: 1789-1797 |
|
GSE222744 |
| Bellissimo, Dana C et al. (2020) Runx1 negatively regulates inflammatory cytokine production by neutrophils in response to Toll-like receptor signaling.; Blood Adv, 4: 1145-1158 |
|
GSE144481 |
| Belloy, Marcy et al. (2025) Toxoplasma gondii infection and chronic IL-1 elevation drive hippocampal DNA double-strand break signaling, leading to cognitive deficits.; Nat Neurosci, 28: 2067-2077 |
|
GSE274667 GSE274075 |
| Belotti, Edwige et al. (2020) H2A.Z is dispensable for both basal and activated transcription in post-mitotic mouse muscles.; Nucleic Acids Res, 48: 4601-4613 |
|
GSE111573 |
| Beltran, Elena et al. (2011) A cyclin-D1 interaction with BAX underlies its oncogenic role and potential as a therapeutic target in mantle cell lymphoma.; Proc Natl Acad Sci U S A, 108: 12461-6 |
|
GSE25613 |
| Beltràn-Ramírez, Olga et al. (2010) An approach to the study of gene expression in hepatocarcinogenesis initiation.; Transl Oncol, 3: 142-8 |
|
GSE12030 |
| Belzeaux, R et al. (2012) Responder and nonresponder patients exhibit different peripheral transcriptional signatures during major depressive episode.; Transl Psychiatry, 2: e185 |
|
GSE38206 |
| Belzeaux, Raoul et al. (2020) GPR56/ADGRG1 is associated with response to antidepressant treatment.; Nat Commun, 11: 1635 |
|
GSE146446 |
| Ben Abdallah, Hakim et al. (2023) Heat shock protein 90 inhibition attenuates inflammation in models of atopic dermatitis: a novel mechanism of action.; Front Immunol, 14: 1289788 |
|
GSE246569 |
| Ben Amar, Dounia et al. (2022) Environmental cues from neural crest derivatives act as metastatic triggers in an embryonic neuroblastoma model.; Nat Commun, 13: 2549 |
|
GSE169280 |
| Ben-Ami, Oren et al. (2013) Addiction of t(8;21) and inv(16) acute myeloid leukemia to native RUNX1.; Cell Rep, 4: 1131-43 |
|
GSE45743 |
| Ben-Shachar, Shay et al. (2009) Mouse models of MeCP2 disorders share gene expression changes in the cerebellum and hypothalamus.; Hum Mol Genet, 18: 2431-42 |
|
GSE15574 |
| Ben-Tov Perry, Rotem et al. (2023) Silc1 long noncoding RNA is an immediate-early gene promoting efficient memory formation.; Cell Rep, 42: 113168 |
|
GSE216643.2 |
| Ben-Zvi, Ayal et al. (2014) Mfsd2a is critical for the formation and function of the blood-brain barrier.; Nature, 509: 507-11 |
|
GSE56777 |
| Benabdallah, Nezha S et al. (2023) Aberrant gene activation in synovial sarcoma relies on SSX specificity and increased PRC1.1 stability.; Nat Struct Mol Biol, 30: 1640-1652 |
|
GSE233376 |
| Benam, Kambez H et al. (2016) Matched-Comparative Modeling of Normal and Diseased Human Airway Responses Using a Microengineered Breathing Lung Chip.; Cell Syst, 3: 456-466.e4 |
|
GSE87098 |
| Bégay, Valérie et al. (2015) Deregulation of the endogenous C/EBPβ LIP isoform predisposes to tumorigenesis.; J Mol Med (Berl), 93: 39-49 |
|
GSE53770 |