List of all 20,325 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Berisha, Stela Z et al. (2011) Changes in whole blood gene expression in obese subjects with type 2 diabetes following bariatric surgery: a pilot study.; PLoS One, 6: e16729 |
|
GSE19790 |
| Berkofsky-Fessler, Windy et al. (2009) Preclinical biomarkers for a cyclin-dependent kinase inhibitor translate to candidate pharmacodynamic biomarkers in phase I patients.; Mol Cancer Ther, 8: 2517-25 |
|
GSE15396 |
| Berman, Robert F et al. (2025) GFAP mutation and astrocyte dysfunction lead to a neurodegenerative profile with impaired synaptic plasticity and cognitive deficits in a rat model of Alexander disease.; eNeuro, 12: [no pages] |
|
GSE278645 |
| Bermejo-Martin, Jesus F et al. (2010) Host adaptive immunity deficiency in severe pandemic influenza.; Crit Care, 14: R167 |
|
GSE21802 |
| Bermejo-Álvarez, P et al. (2015) Tet-mediated imprinting erasure in H19 locus following reprogramming of spermatogonial stem cells to induced pluripotent stem cells.; Sci Rep, 5: 13691 |
|
GSE64856 |
| Bermingham, Emma N et al. (2013) Post-weaning selenium and folate supplementation affects gene and protein expression and global DNA methylation in mice fed high-fat diets.; BMC Med Genomics, 6: 7 |
|
GSE43038 |
| Bermudez, Yahaira et al. (2023) Nonstructural protein 1 widespread RNA decay phenotype varies among coronaviruses.; iScience, 26: 105887 |
|
GSE217848 |
| Bermúdez, Mei-Ling et al. (2018) Intranasal carnosine attenuates transcriptomic alterations and improves mitochondrial function in the Thy1-aSyn mouse model of Parkinson's disease.; Mol Genet Metab, 125: 305-313 |
|
GSE115769 |
| Bermúdez-Muñoz, Jose M et al. (2021) Dual-Specificity Phosphatase 1 (DUSP1) Has a Central Role in Redox Homeostasis and Inflammation in the Mouse Cochlea.; Antioxidants (Basel), 10: [no pages] |
|
GSE176114 |
| Bernabò, Paola et al. (2017) In Vivo Translatome Profiling in Spinal Muscular Atrophy Reveals a Role for SMN Protein in Ribosome Biology.; Cell Rep, 21: 953-965 |
|
GSE102204 |
| Bernal, Mónica et al. (2012) Genome-wide differential genetic profiling characterizes colorectal cancers with genetic instability and specific routes to HLA class I loss and immune escape.; Cancer Immunol Immunother, 61: 803-16 |
|
GSE27544 |
| Bernard-Valnet, Raphaël et al. (2022) Influenza vaccination induces autoimmunity against orexinergic neurons in a mouse model for narcolepsy.; Brain, 145: 2018-2030 |
|
GSE195600 |
| Bernardini, Camilla et al. (2012) Genome-wide gene expression profiling of human narcolepsy.; Gene Expr, 15: 171-81 |
|
GSE21592 |
| Bernardini, Camilla et al. (2013) Mitochondrial network genes in the skeletal muscle of amyotrophic lateral sclerosis patients.; PLoS One, 8: e57739 |
|
GSE41414 |
| Bernardo, G M et al. (2013) FOXA1 represses the molecular phenotype of basal breast cancer cells.; Oncogene, [no vol.]: [no pages] |
|
GSE31003 |
| Berndt, Nicole et al. (2021) Photosensitivity and cGAS-dependent type I IFN activation in lupus patients with TREX1 deficiency.; J Invest Dermatol, [no vol.]: [no pages] |
|
GSE169244 |
| Bernhardt, Celine et al. (2022) KLF9 and KLF13 transcription factors boost myelin gene expression in oligodendrocytes as partners of SOX10 and MYRF.; Nucleic Acids Res, 50: 11509-11528 |
|
GSE212736 |
| Bernhardt, Vipa et al. (2011) Tracheal occlusion conditioning in conscious rats modulates gene expression profile of medial thalamus.; Front Physiol, 2: 24 |
|
GSE25152 |
| Bernhardt, Vipa et al. (2011) Tracheal occlusion modulates the gene expression profile of the medial thalamus in anesthetized rats.; J Appl Physiol (1985), 111: 117-24 |
|
GSE25153 |
| Bernier, Michel et al. (2013) Antitumor activity of (R,R')-4-methoxy-1-naphthylfenoterol in a rat C6 glioma xenograft model in the mouse.; Pharmacol Res Perspect, 1: e00010 |
|
GSE45307 |
| Bernt, Kathrin M et al. (2011) MLL-rearranged leukemia is dependent on aberrant H3K79 methylation by DOT1L.; Cancer Cell, 20: 66-78 |
|
GSE25911 |
| Bero, Adam W et al. (2014) Early remodeling of the neocortex upon episodic memory encoding.; Proc Natl Acad Sci U S A, 111: 11852-7 |
|
GSE58510 |
| Beronja, Slobodan et al. (2013) RNAi screens in mice identify physiological regulators of oncogenic growth.; Nature, 501: 185-90 |
|
GSE48480 |
| Berquez, Marine et al. (2023) Lysosomal cystine export regulates mTORC1 signaling to guide kidney epithelial cell fate specialization.; Nat Commun, 14: 3994 |
|
GSE226397.2 GSE226397.1 |
| Berrett, Hannah et al. (2019) Development of Type 2 Innate Lymphoid Cells Is Selectively Inhibited by Sustained E Protein Activity.; Immunohorizons, 3: 593-605 |
|
GSE135195 |
| Berrios, Christian et al. (2016) Merkel Cell Polyomavirus Small T Antigen Promotes Pro-Glycolytic Metabolic Perturbations Required for Transformation.; PLoS Pathog, 12: e1006020 |
|
GSE79968 |
| Berry, Kimberly J et al. (2023) Genomic glucocorticoid action in embryonic mouse neural stem cells.; Mol Cell Endocrinol, 563: 111864 |
|
GSE222392 |
| Berry, Matthew P R et al. (2010) An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis.; Nature, 466: 973-7 |
|
GSE19443 GSE19439 GSE19435 GSE19442 GSE19444 GSE22098 |
| Berryhill, Christine A et al. (2024) Protein Thermal Stability Changes Induced by the Global Methylation Inhibitor 3-Deazaneplanocin A (DZNep).; Biomolecules, 14: [no pages] |
|
GSE268629 |
| Bersaglieri, Cristiana et al. (2022) Genome-wide maps of nucleolus interactions reveal distinct layers of repressive chromatin domains.; Nat Commun, 13: 1483 |
|
GSE150822 |
| Bershteyn, Marina et al. (2025) Human stem cell-derived GABAergic interneuron development reveals early emergence of subtype diversity and gradual electrochemical maturation.; Neuron, 113: 3162-3184.e10 |
|
GSE283776 |
| Bersini, Simone et al. (2020) Transcriptional and Functional Changes of the Human Microvasculature during Physiological Aging and Alzheimer Disease.; Adv Biosyst, 4: e2000044 |
|
GSE121444 |
| Berson, Amit et al. (2012) Cholinergic-associated loss of hnRNP-A/B in Alzheimer's disease impairs cortical splicing and cognitive function in mice.; EMBO Mol Med, 4: 730-42 |
|
GSE26972 |
| Bertacchi, Michele et al. (2015) Activin/Nodal Signaling Supports Retinal Progenitor Specification in a Narrow Time Window during Pluripotent Stem Cell Neuralization.; Stem Cell Reports, 5: 532-45 |
|
GSE71830 |
| Bertacchi, Michele et al. (2020) NR2F1 regulates regional progenitor dynamics in the mouse neocortex and cortical gyrification in BBSOAS patients.; EMBO J, 39: e104163 |
|
GSE146595 |
| Berthenet, Kevin et al. (2020) Failed Apoptosis Enhances Melanoma Cancer Cell Aggressiveness.; Cell Rep, 31: 107731 |
|
GSE137278 |
| Berthiaume, Jessica M et al. (2010) The myocardial contractile response to physiological stress improves with high saturated fat feeding in heart failure.; Am J Physiol Heart Circ Physiol, 299: H410-21 |
|
GSE21021 |
| Bertino, Francesca et al. (2024) Dysregulation of FLVCR1a-dependent mitochondrial calcium handling in neural progenitors causes congenital hydrocephalus.; Cell Rep Med, 5: 101647 |
|
GSE221231 |
| Berto, Stefano et al. (2016) ELAVL2-regulated transcriptional and splicing networks in human neurons link neurodevelopment and autism.; Hum Mol Genet, 25: 2451-2464 |
|
GSE69092 |
| Berto, Stefano et al. (2021) Gene-expression correlates of the oscillatory signatures supporting human episodic memory encoding.; Nat Neurosci, 24: 554-564 |
|
GSE139914.2 |
| Bertolini, Jessica A et al. (2019) Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance.; Cell Stem Cell, 24: 462-476.e6 |
|
GSE90560 |
| Berton, Stefania et al. (2014) Genetic characterization of p27(kip1) and stathmin in controlling cell proliferation in vivo.; Cell Cycle, 13: 3100-11 |
|
GSE60078 |
| Bertotti, Andrea et al. (2009) Only a subset of Met-activated pathways are required to sustain oncogene addiction.; Sci Signal, 2: ra80 |
|
GSE19043 |
| Bertout, Jessica A et al. (2009) Heterozygosity for hypoxia inducible factor 1alpha decreases the incidence of thymic lymphomas in a p53 mutant mouse model.; Cancer Res, 69: 3213-20 |
|
GSE14336 |
| Bertout, Jessica A et al. (2009) HIF2alpha inhibition promotes p53 pathway activity, tumor cell death, and radiation responses.; Proc Natl Acad Sci U S A, 106: 14391-6 |
|
GSE16622 |
| Besschetnova, Anna et al. (2023) Demethylation of EHMT1/GLP Protein Reprograms Its Transcriptional Activity and Promotes Prostate Cancer Progression.; Cancer Res Commun, 3: 1716-1730 |
|
GSE201770 |
| Besse, Andrej et al. (2016) MiR-338-5p sensitizes glioblastoma cells to radiation through regulation of genes involved in DNA damage response.; Tumour Biol, 37: 7719-27 |
|
GSE75789 |
| Bessho, Kazuhiko et al. (2013) Integrative genomics identifies candidate microRNAs for pathogenesis of experimental biliary atresia.; BMC Syst Biol, 7: 104 |
|
GSE41594 |
| Best, Carolyn J M et al. (2005) Molecular alterations in primary prostate cancer after androgen ablation therapy.; Clin Cancer Res, 11: 6823-34 |
|
GSE2443 |
| Bestard-Cuche, Nadine et al. (2024) Illumina SBS Sequencing and DNBSEQ Perform Similarly for Single-Cell Transcriptomics.; Genes (Basel), 15: [no pages] |
|
GSE267545.4 GSE267545.1 GSE267545.2 GSE267545.3 |
| Bettini, Matthew L et al. (2012) Loss of epigenetic modification driven by the Foxp3 transcription factor leads to regulatory T cell insufficiency.; Immunity, 36: 717-30 |
|
GSE35164 |
| Betto, Riccardo M et al. (2021) Metabolic control of DNA methylation in naive pluripotent cells.; Nat Genet, 53: 215-229 |
|
GSE133926 |
| Beuling, Eva et al. (2011) GATA factors regulate proliferation, differentiation, and gene expression in small intestine of mature mice.; Gastroenterology, 140: 1219-1229.e1-2 |
|
GSE22416 |
| Beumer, Wouter et al. (2014) The gene expression profile of CD11c+ CD8?- dendritic cells in the pre-diabetic pancreas of the NOD mouse.; PLoS One, 9: e103404 |
|
GSE45028 |
| Beura, Lalit K et al. (2016) Normalizing the environment recapitulates adult human immune traits in laboratory mice.; Nature, 532: 512-6 |
|
GSE78979 |
| Beutner, Clara et al. (2013) Unique transcriptome signature of mouse microglia.; Glia, [no vol.]: [no pages] |
|
GSE43808 |
| Bevill, Samantha M et al. (2019) GSK2801, a BAZ2/BRD9 Bromodomain Inhibitor, Synergizes with BET Inhibitors to Induce Apoptosis in Triple-Negative Breast Cancer.; Mol Cancer Res, 17: 1503-1518 |
|
GSE116907 |
| Beyer, Marc et al. (2011) Repression of the genome organizer SATB1 in regulatory T cells is required for suppressive function and inhibition of effector differentiation.; Nat Immunol, 12: 898-907 |
|
GSE15390 |
| Beyer, Marc et al. (2012) High-resolution transcriptome of human macrophages.; PLoS One, 7: e45466 |
|
GSE35449 |
| Beyer, Tobias A et al. (2008) Impaired liver regeneration in Nrf2 knockout mice: role of ROS-mediated insulin/IGF-1 resistance.; EMBO J, 27: 212-23 |
|
GSE8969 |
| Bezzi, Marco et al. (2013) Regulation of constitutive and alternative splicing by PRMT5 reveals a role for Mdm4 pre-mRNA in sensing defects in the spliceosomal machinery.; Genes Dev, 27: 1903-16 |
|
GSE45269 GSE45284 |
| Bhadri, Vivek A et al. (2011) Evaluation of the NOD/SCID xenograft model for glucocorticoid-regulated gene expression in childhood B-cell precursor acute lymphoblastic leukemia.; BMC Genomics, 12: 565 |
|
GSE30392 |
| Bhang, Hyo-eun C et al. (2015) Studying clonal dynamics in response to cancer therapy using high-complexity barcoding.; Nat Med, 21: 440-8 |
|
GSE62121 |
| Bharathy, Narendra et al. (2019) Preclinical rationale for entinostat in embryonal rhabdomyosarcoma.; Skelet Muscle, 9: 12 |
|
GSE115698.2 GSE115698.1 |
| Bhasin, Jeffrey M et al. (2008) Sex specific gene regulation and expression QTLs in mouse macrophages from a strain intercross.; PLoS One, 3: e1435 |
|
GSE8512 |
| Bhaskar Rao, Divya et al. (2021) YY1 regulated transcription-based stratification of gastric tumors and identification of potential therapeutic candidates.; J Cell Commun Signal, 15: 251-267 |
|
GSE163164 |
| Bhaskar, Uchit et al. (2024) An Efficient Direct Conversion Strategy to Generate Functional Astrocytes from Human Adult Fibroblasts.; bioRxiv, [no vol.]: [no pages] |
|
GSE239320 |
| Bhaskara, Srividya et al. (2010) Hdac3 is essential for the maintenance of chromatin structure and genome stability.; Cancer Cell, 18: 436-47 |
|
GSE22457 |
| Bhaskaran, Shylesh et al. (2024) The nitrone compound OKN-007 delays motor neuron loss and disease progression in the G93A mouse model of amyotrophic lateral sclerosis.; Front Neurosci, 18: 1505369 |
|
GSE281064 |
| Bhat, Kamakoti P et al. (2024) CRISPR activation screens identify the SWI/SNF ATPases as suppressors of ferroptosis.; Cell Rep, 43: 114345 |
|
GSE245239 |
| Bhat, Kruttika et al. (2020) The dopamine receptor antagonist trifluoperazine prevents phenotype conversion and improves survival in mouse models of glioblastoma.; Proc Natl Acad Sci U S A, 117: 11085-11096 |
|
GSE146358 |
| Bhatia, Bobby et al. (2008) Critical and distinct roles of p16 and telomerase in regulating the proliferative life span of normal human prostate epithelial progenitor cells.; J Biol Chem, 283: 27957-72 |
|
GSE10570 |
| Bhatt, Dev M et al. (2012) Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions.; Cell, 150: 279-90 |
|
GSE38892 GSE32916 |
| Bhattacharjee, A et al. (2001) Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses.; Proc Natl Acad Sci U S A, 98: 13790-5 |
|
bhattacharjee-lung |
| Bhattacharjee, Rudrarup et al. (2024) Compromised transcription-mRNA export factor THOC2 causes R-loop accumulation, DNA damage and adverse neurodevelopment.; Nat Commun, 15: 1210 |
|
GSE245539 |
| Bhattacharya, Dipankar et al. (2021) Repositioning of a novel GABA-B receptor agonist, AZD3355 (Lesogaberan), for the treatment of non-alcoholic steatohepatitis.; Sci Rep, 11: 20827 |
|
GSE178703 |
| Bhattacharya, Shreya et al. (2023) Identification of a neutrophil-specific PIK3R1 mutation facilitates targeted treatment in a patient with Sweet syndrome.; J Clin Invest, 133: [no pages] |
|
GSE190335 |
| Bhattacharya, Soumyaroop et al. (2009) Molecular biomarkers for quantitative and discrete COPD phenotypes.; Am J Respir Cell Mol Biol, 40: 359-67 |
|
GSE8581 |
| Bhattacharya, Sreyashi et al. (2024) Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers.; Cell Death Dis, 15: 617 |
|
GSE210847 |
| Bhattacharyya, Anuradha et al. (2021) Small molecule splicing modifiers with systemic HTT-lowering activity.; Nat Commun, 12: 7299 |
|
GSE162813 |
| Bhattacharyya, Sankar et al. (2011) NFATc1 affects mouse splenic B cell function by controlling the calcineurin--NFAT signaling network.; J Exp Med, 208: 823-39 |
|
GSE21063 |
| Bhattacharyya, Swati et al. (2016) Tenascin-C drives persistence of organ fibrosis.; Nat Commun, 7: 11703 |
|
GSE79621 |
| Bhattacharyya, Tanmoy et al. (2013) Mechanistic basis of infertility of mouse intersubspecific hybrids.; Proc Natl Acad Sci U S A, 110: E468-77 |
|
GSE41707 |
| Bhattacherjee, Aritra et al. (2017) Neuronal cytoskeletal gene dysregulation and mechanical hypersensitivity in a rat model of Rett syndrome.; Proc Natl Acad Sci U S A, 114: E6952-E6961 |
|
GSE87855 |
| Bhattacherjee, Aritra et al. (2019) Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction.; Nat Commun, 10: 4169 |
|
GSE124952 |
| Bhattarai, Sunil et al. (2021) Modulation of Brain Pathology by Enhancer RNAs in Cerebral Ischemia.; Mol Neurobiol, 58: 1482-1490 |
|
GSE136405 |
| Bhattaram, Pallavi et al. (2010) Organogenesis relies on SoxC transcription factors for the survival of neural and mesenchymal progenitors.; Nat Commun, 1: 9 |
|
GSE20740 |
| Bhatti, Dionnet L et al. (2022) Molecular and Cellular Adaptations in Hippocampal Parvalbumin Neurons Mediate Behavioral Responses to Chronic Social Stress.; Front Mol Neurosci, 15: 898851 |
|
GSE184027 |