List of all 17,212 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Bhasin, Jeffrey M et al. (2008) Sex specific gene regulation and expression QTLs in mouse macrophages from a strain intercross.; PLoS One, 3: e1435 |
|
GSE8512 |
| Bhaskar Rao, Divya et al. (2021) YY1 regulated transcription-based stratification of gastric tumors and identification of potential therapeutic candidates.; J Cell Commun Signal, 15: 251-267 |
|
GSE163164 |
| Bhaskar, Uchit et al. (2024) An Efficient Direct Conversion Strategy to Generate Functional Astrocytes from Human Adult Fibroblasts.; bioRxiv, [no vol.]: [no pages] |
|
GSE239320 |
| Bhaskara, Srividya et al. (2010) Hdac3 is essential for the maintenance of chromatin structure and genome stability.; Cancer Cell, 18: 436-47 |
|
GSE22457 |
| Bhaskaran, Shylesh et al. (2024) The nitrone compound OKN-007 delays motor neuron loss and disease progression in the G93A mouse model of amyotrophic lateral sclerosis.; Front Neurosci, 18: 1505369 |
|
GSE281064 |
| Bhat, Kamakoti P et al. (2024) CRISPR activation screens identify the SWI/SNF ATPases as suppressors of ferroptosis.; Cell Rep, 43: 114345 |
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GSE245239 |
| Bhat, Kruttika et al. (2020) The dopamine receptor antagonist trifluoperazine prevents phenotype conversion and improves survival in mouse models of glioblastoma.; Proc Natl Acad Sci U S A, 117: 11085-11096 |
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GSE146358 |
| Bhatia, Bobby et al. (2008) Critical and distinct roles of p16 and telomerase in regulating the proliferative life span of normal human prostate epithelial progenitor cells.; J Biol Chem, 283: 27957-72 |
|
GSE10570 |
| Bhatt, Dev M et al. (2012) Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions.; Cell, 150: 279-90 |
|
GSE38892 GSE32916 |
| Bhattacharjee, A et al. (2001) Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses.; Proc Natl Acad Sci U S A, 98: 13790-5 |
|
bhattacharjee-lung |
| Bhattacharjee, Rudrarup et al. (2024) Compromised transcription-mRNA export factor THOC2 causes R-loop accumulation, DNA damage and adverse neurodevelopment.; Nat Commun, 15: 1210 |
|
GSE245539 |
| Bhattacharya, Dipankar et al. (2021) Repositioning of a novel GABA-B receptor agonist, AZD3355 (Lesogaberan), for the treatment of non-alcoholic steatohepatitis.; Sci Rep, 11: 20827 |
|
GSE178703 |
| Bhattacharya, Shreya et al. (2023) Identification of a neutrophil-specific PIK3R1 mutation facilitates targeted treatment in a patient with Sweet syndrome.; J Clin Invest, 133: [no pages] |
|
GSE190335 |
| Bhattacharya, Soumyaroop et al. (2009) Molecular biomarkers for quantitative and discrete COPD phenotypes.; Am J Respir Cell Mol Biol, 40: 359-67 |
|
GSE8581 |
| Bhattacharya, Sreyashi et al. (2024) Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers.; Cell Death Dis, 15: 617 |
|
GSE210847 |
| Bhattacharyya, Anuradha et al. (2021) Small molecule splicing modifiers with systemic HTT-lowering activity.; Nat Commun, 12: 7299 |
|
GSE162813 |
| Bhattacharyya, Sankar et al. (2011) NFATc1 affects mouse splenic B cell function by controlling the calcineurin--NFAT signaling network.; J Exp Med, 208: 823-39 |
|
GSE21063 |
| Bhattacharyya, Swati et al. (2016) Tenascin-C drives persistence of organ fibrosis.; Nat Commun, 7: 11703 |
|
GSE79621 |
| Bhattacharyya, Tanmoy et al. (2013) Mechanistic basis of infertility of mouse intersubspecific hybrids.; Proc Natl Acad Sci U S A, 110: E468-77 |
|
GSE41707 |
| Bhattacherjee, Aritra et al. (2017) Neuronal cytoskeletal gene dysregulation and mechanical hypersensitivity in a rat model of Rett syndrome.; Proc Natl Acad Sci U S A, 114: E6952-E6961 |
|
GSE87855 |
| Bhattacherjee, Aritra et al. (2019) Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction.; Nat Commun, 10: 4169 |
|
GSE124952 |
| Bhattarai, Sunil et al. (2021) Modulation of Brain Pathology by Enhancer RNAs in Cerebral Ischemia.; Mol Neurobiol, 58: 1482-1490 |
|
GSE136405 |
| Bhattaram, Pallavi et al. (2010) Organogenesis relies on SoxC transcription factors for the survival of neural and mesenchymal progenitors.; Nat Commun, 1: 9 |
|
GSE20740 |
| Bhatti, Dionnet L et al. (2022) Molecular and Cellular Adaptations in Hippocampal Parvalbumin Neurons Mediate Behavioral Responses to Chronic Social Stress.; Front Mol Neurosci, 15: 898851 |
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GSE184027 |
| Bhoi, Jacob D et al. (2021) The SNARE regulator Complexin3 is a target of the cone circadian clock.; J Comp Neurol, 529: 1066-1080 |
|
GSE155550 |
| Bhojwani, Deepa et al. (2006) Biologic pathways associated with relapse in childhood acute lymphoblastic leukemia: a Children's Oncology Group study.; Blood, 108: 711-7 |
|
GSE3912 |
| Bhojwani, Deepa et al. (2008) Gene expression signatures predictive of early response and outcome in high-risk childhood acute lymphoblastic leukemia: A Children's Oncology Group Study [corrected].; J Clin Oncol, 26: 4376-84 |
|
GSE7440 |
| Bhomia, Manish et al. (2024) Transcriptomic Signatures of Neuronally Derived Extracellular Vesicles Reveal the Presence of Olfactory Receptors in Clinical Samples from Traumatic Brain Injury Patients.; Int J Mol Sci, 25: [no pages] |
|
GSE254880 |
| Bhusari, Sachin et al. (2015) Genomic Profiling Reveals Unique Molecular Alterations in Hepatoblastomas and Adjacent Hepatocellular Carcinomas in B6C3F1 Mice.; Toxicol Pathol, 43: 1114-26 |
|
GSE67316 |
| Bi, Jinfang et al. (2022) KLF4 inhibits early neural differentiation of ESCs by coordinating specific 3D chromatin structure.; Nucleic Acids Res, 50: 12235-50 |
|
GSE213418 GSE194068 |
| Bi, Yan et al. (2020) Identification of ALPPL2 as a Naive Pluripotent State-Specific Surface Protein Essential for Human Naive Pluripotency Regulation.; Cell Rep, 30: 3917-3931.e5 |
|
GSE133097.5 GSE133097.1 GSE133097.2 GSE133097.3 GSE133097.4 |
| Bi-Lin, Kathleen Wung et al. (2021) Critical role of the BAF chromatin remodeling complex during murine neural crest development.; PLoS Genet, 17: e1009446 |
|
GSE153121 |
| Biagioli, Marta et al. (2009) Unexpected expression of alpha- and beta-globin in mesencephalic dopaminergic neurons and glial cells.; Proc Natl Acad Sci U S A, 106: 15454-9 |
|
GSE16192 |
| Bialek, Peter et al. (2011) Distinct protein degradation profiles are induced by different disuse models of skeletal muscle atrophy.; Physiol Genomics, 43: 1075-86 |
|
GSE25908 |
| Bian, Fuyun et al. (2022) Functional analysis of the Vsx2 super-enhancer uncovers distinct cis-regulatory circuits controlling Vsx2 expression during retinogenesis.; Development, 149: [no pages] |
|
GSE196104 |
| Bian, Fuyun et al. (2025) SOX2-VSX2 Co-Occupancy Shapes Retinal Neurogenesis Through Dynamic Chromatin Regulation.; bioRxiv, [no vol.]: [no pages] |
|
GSE281032 |
| Bian, Ming-Ming et al. (2024) The beneficial effect of α-lipoic acid on spinal cord injury repair in rats is mediated through inhibition of oxidative stress: A transcriptomic analysis.; J Spinal Cord Med, [no vol.]: 1-14 |
|
GSE242507 |
| Bianchi, Elisa et al. (2017) Role of miR-34a-5p in Hematopoietic Progenitor Cells Proliferation and Fate Decision: Novel Insights into the Pathogenesis of Primary Myelofibrosis.; Int J Mol Sci, 18: [no pages] |
|
GSE89156 |
| Bianchi-Smiraglia, Anna et al. (2018) Inhibition of the aryl hydrocarbon receptor/polyamine biosynthesis axis suppresses multiple myeloma.; J Clin Invest, 128: 4682-4696 |
|
GSE117160 |
| Bianco, Julien N et al. (2019) Overexpression of Claspin and Timeless protects cancer cells from replication stress in a checkpoint-independent manner.; Nat Commun, 10: 910 |
|
GSE123380 |
| Bianco, Stéphanie et al. (2014) LRH-1 governs vital transcriptional programs in endocrine-sensitive and -resistant breast cancer cells.; Cancer Res, 74: 2015-25 |
|
GSE54891 |
| Biase, Fernando H et al. (2014) Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing.; Genome Res, 24: 1787-96 |
|
GSE57249 |
| Bidinotto, Lucas Tadeu et al. (2012) Fish oil alters tamoxifen-modulated expression of mRNAs that encode genes related to differentiation, proliferation, metastasis, and immune response in rat mammary tumors.; Nutr Cancer, 64: 991-9 |
|
GSE27465 |
| Bido, Simone et al. (2021) Microglia-specific overexpression of α-synuclein leads to severe dopaminergic neurodegeneration by phagocytic exhaustion and oxidative toxicity.; Nat Commun, 12: 6237 |
|
GSE157533 |
| Bieback, Karen et al. (2010) Altered gene expression in human adipose stem cells cultured with fetal bovine serum compared to human supplements.; Tissue Eng Part A, 16: 3467-84 |
|
GSE23851 |
| Biedka, Stephanie et al. (2024) One-pot method for preparing DNA, RNA, and protein for multiomics analysis.; Commun Biol, 7: 324 |
|
GSE241432 |
| Bieging, Kathryn T et al. (2011) A shared gene expression signature in mouse models of EBV-associated and non-EBV-associated Burkitt lymphoma.; Blood, 118: 6849-59 |
|
GSE26918 |
| Bielefeld, P et al. (2024) Traumatic brain injury promotes neurogenesis at the cost of astrogliogenesis in the adult hippocampus of male mice.; Nat Commun, 15: 5222 |
|
GSE230942 |
| Bielinska, Anna U et al. (2014) Distinct pathways of humoral and cellular immunity induced with the mucosal administration of a nanoemulsion adjuvant.; J Immunol, 192: 2722-33 |
|
GSE51804 |
| Bienkowska, Jadwiga R et al. (2009) Convergent Random Forest predictor: methodology for predicting drug response from genome-scale data applied to anti-TNF response.; Genomics, 94: 423-32 |
|
GSE15258 |
| Bienvenu, Frédéric et al. (2010) Transcriptional role of cyclin D1 in development revealed by a genetic-proteomic screen.; Nature, 463: 374-8 |
|
GSE13635 |
| Bierne, Hélène et al. (2009) Human BAHD1 promotes heterochromatic gene silencing.; Proc Natl Acad Sci U S A, 106: 13826-31 |
|
GSE16097 |
| Biewenga, Petra et al. (2008) Gene expression in early stage cervical cancer.; Gynecol Oncol, 108: 520-6 |
|
GSE7410 |
| Bifsha, Panojot et al. (2014) Rgs6 is required for adult maintenance of dopaminergic neurons in the ventral substantia nigra.; PLoS Genet, 10: e1004863 |
|
GSE75777 |
| Biggs O'May, Joshua et al. (2025) WNK1-dependent water influx is required for CD4+T cell activation and T cell-dependent antibody responses.; Nat Commun, 16: 1857 |
|
GSE201228 |
| Bigio, Benedetta et al. (2016) Epigenetics and energetics in ventral hippocampus mediate rapid antidepressant action: Implications for treatment resistance.; Proc Natl Acad Sci U S A, 113: 7906-11 |
|
GSE83336 |
| Biglari, Nasim et al. (2021) Functionally distinct POMC-expressing neuron subpopulations in hypothalamus revealed by intersectional targeting.; Nat Neurosci, 24: 913-929 |
|
GSE153753 |
| Bigler, Jeannette et al. (2013) Cross-study homogeneity of psoriasis gene expression in skin across a large expression range.; PLoS One, 8: e52242 |
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GSE41662 GSE34248 |
| Bigler, Rebecca L et al. (2017) Messenger RNAs localized to distal projections of human stem cell derived neurons.; Sci Rep, 7: 611 |
|
GSE84975 |
| Bijangi-Vishehsaraei, Khadijeh et al. (2016) Microarray Analysis Gene Expression Profiles in Laryngeal Muscle After Recurrent Laryngeal Nerve Injury.; Ann Otol Rhinol Laryngol, 125: 247-56 |
|
GSE72361 |
| Bijkerk, Roel et al. (2016) Silencing of microRNA-132 reduces renal fibrosis by selectively inhibiting myofibroblast proliferation.; Kidney Int, 89: 1268-80 |
|
GSE76548 |
| Bik-Multanowski, Miroslaw et al. (2015) MTRNR2L12: A Candidate Blood Marker of Early Alzheimer's Disease-Like Dementia in Adults with Down Syndrome.; J Alzheimers Dis, 46: 145-50 |
|
GSE63870 |
| Bikoff, Jay B et al. (2016) Spinal Inhibitory Interneuron Diversity Delineates Variant Motor Microcircuits.; Cell, 165: 207-219 |
|
GSE69560 |
| Bilban, Martin et al. (2006) Carbon monoxide orchestrates a protective response through PPARgamma.; Immunity, 24: 601-10 |
|
GSE1906 |
| Bilbao, Ainhoa et al. (2008) Loss of the Ca2+/calmodulin-dependent protein kinase type IV in dopaminoceptive neurons enhances behavioral effects of cocaine.; Proc Natl Acad Sci U S A, 105: 17549-54 |
|
GSE10869 |
| Bild, Andrea H et al. (2006) Oncogenic pathway signatures in human cancers as a guide to targeted therapies.; Nature, 439: 353-7 |
|
GSE3151 GSE3141 GSE3143 GSE3156 GSE3149 |
| Bildsoe, Heidi et al. (2016) Transcriptional targets of TWIST1 in the cranial mesoderm regulate cell-matrix interactions and mesenchyme maintenance.; Dev Biol, 418: 189-203 |
|
GSE80335 |
| Bilinska, Katarzyna et al. (2020) Expression of the SARS-CoV-2 Entry Proteins, ACE2 and TMPRSS2, in Cells of the Olfactory Epithelium: Identification of Cell Types and Trends with Age.; ACS Chem Neurosci, 11: 1555-1562 |
|
GSE147771 |
| Bilke, Sven et al. (2013) Oncogenic ETS fusions deregulate E2F3 target genes in Ewing sarcoma and prostate cancer.; Genome Res, 23: 1797-809 |
|
GSE27524 |
| Bilkei-Gorzo, Andras et al. (2017) A chronic low dose of ?9-tetrahydrocannabinol (THC) restores cognitive function in old mice.; Nat Med, 23: 782-787 |
|
GSE57823 GSE58437 |
| Billipp, Tyler E et al. (2024) Tuft cell-derived acetylcholine promotes epithelial chloride secretion and intestinal helminth clearance.; Immunity, 57: 1243-1259.e8 |
|
GSE262198 |
| Billmann-Born, Susanne et al. (2011) Genome-wide expression profiling identifies an impairment of negative feedback signals in the Crohn's disease-associated NOD2 variant L1007fsinsC.; J Immunol, 186: 4027-38 |
|
GSE22611 |
| Billottet, Clotilde et al. (2008) Modulation of several waves of gene expression during FGF-1 induced epithelial-mesenchymal transition of carcinoma cells.; J Cell Biochem, 104: 826-39 |
|
GSE5664 |
| Billups, Stephen C et al. (2009) Identifying significant temporal variation in time course microarray data without replicates.; BMC Bioinformatics, 10: 96 |
|
GSE12289 |
| Bilsland, Alan E et al. (2015) Identification of a Selective G1-Phase Benzimidazolone Inhibitor by a Senescence-Targeted Virtual Screen Using Artificial Neural Networks.; Neoplasia, 17: 704-715 |
|
GSE72621 |
| Bin Imtiaz, Muhammad Khadeesh et al. (2021) Declining lamin B1 expression mediates age-dependent decreases of hippocampal stem cell activity.; Cell Stem Cell, [no vol.]: [no pages] |
|
GSE163795 |
| Binder, Stefanie et al. (2020) Master and servant: LINC00152 - a STAT3-induced long noncoding RNA regulates STAT3 in a positive feedback in human multiple myeloma.; BMC Med Genomics, 13: 22 |
|
GSE71092 |
| Bingel, Corinna et al. (2017) Three-dimensional tumor cell growth stimulates autophagic flux and recapitulates chemotherapy resistance.; Cell Death Dis, 8: e3013 |
|
GSE100020 |
| Birck, Cindy et al. (2016) Transcriptomic analyses of primary astrocytes under TNF? treatment.; Genom Data, 7: 7-11 |
|
GSE73022 |
| Birck, Cindy et al. (2021) NF-κB and TNF Affect the Astrocytic Differentiation from Neural Stem Cells.; Cells, 10: [no pages] |
|
GSE117736 |
| Birger, Yehudit et al. (2013) Perturbation of fetal hematopoiesis in a mouse model of Down syndrome's transient myeloproliferative disorder.; Blood, 122: 988-98 |
|
GSE46481 |
| Birkenfeld, Andreas L et al. (2011) Deletion of the mammalian INDY homolog mimics aspects of dietary restriction and protects against adiposity and insulin resistance in mice.; Cell Metab, 14: 184-95 |
|
GSE11845 |
| Birks, Diane K et al. (2013) Pediatric rhabdoid tumors of kidney and brain show many differences in gene expression but share dysregulation of cell cycle and epigenetic effector genes.; Pediatr Blood Cancer, 60: 1095-102 |
|
GSE35493 |
| Birnbaum, David J et al. (2012) Expression Profiles in Stage II Colon Cancer According to APC Gene Status.; Transl Oncol, 5: 72-6 |
|
GSE26906 |
| Birnbaum, Emily M et al. (2024) BT-11 repurposing potential for Alzheimer's disease and insights into its mode of actions.; bioRxiv, [no vol.]: [no pages] |
|
GSE280023 GSE280024 |
| Birnie, Matthew T et al. (2023) Circadian regulation of hippocampal function is disrupted with corticosteroid treatment.; Proc Natl Acad Sci U S A, 120: e2211996120 |
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GSE223761 GSE224038 |