List of all 17,233 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Birnie, Matthew T et al. (2023) Circadian regulation of hippocampal function is disrupted with corticosteroid treatment.; Proc Natl Acad Sci U S A, 120: e2211996120 |
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GSE223761 |
| Birocchi, Filippo et al. (2022) Targeted inducible delivery of immunoactivating cytokines reprograms glioblastoma microenvironment and inhibits growth in mouse models.; Sci Transl Med, 14: eabl4106 |
|
GSE197761 |
| Biros, Erik et al. (2014) Differential gene expression in the proximal neck of human abdominal aortic aneurysm.; Atherosclerosis, 233: 211-8 |
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GSE47472 |
| Birt, Isabelle A et al. (2020) Genetic Liability for Internalizing Versus Externalizing Behavior Manifests in the Developing and Adult Hippocampus: Insight From a Meta-analysis of Transcriptional Profiling Studies in a Selectively Bred Rat Model.; Biol Psychiatry, [no vol.]: [no pages] |
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GSE140594 GSE140598 GSE140597 GSE140596 GSE140287 GSE140595 |
| Birtele, Marcella et al. (2019) Dual modulation of neuron-specific microRNAs and the REST complex promotes functional maturation of human adult induced neurons.; FEBS Lett, 593: 3370-3380 |
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GSE132154 |
| Bischoff, Florian C et al. (2017) Identification and Functional Characterization of Hypoxia-Induced Endoplasmic Reticulum Stress Regulating lncRNA (HypERlnc) in Pericytes.; Circ Res, 121: 368-375 |
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GSE84730 |
| Bisen, Shivantika et al. (2024) A neutrophil elastase-generated mature form of IL-33 is a potent regulator of endothelial cell activation and proliferative retinopathy.; Exp Mol Med, 56: 1703-1716 |
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GSE245784 |
| Bisikirska, Brygida et al. (2016) Elucidation and Pharmacological Targeting of Novel Molecular Drivers of Follicular Lymphoma Progression.; Cancer Res, 76: 664-74 |
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GSE66714 |
| Bisping, Egbert et al. (2006) Gata4 is required for maintenance of postnatal cardiac function and protection from pressure overload-induced heart failure.; Proc Natl Acad Sci U S A, 103: 14471-6 |
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GSE5500 |
| Bissonnette, Robert et al. (2016) Based on Molecular Profiling of Gene Expression, Palmoplantar Pustulosis and Palmoplantar Pustular Psoriasis Are Highly Related Diseases that Appear to Be Distinct from Psoriasis Vulgaris.; PLoS One, 11: e0155215 |
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GSE80047 |
| Biswas, Anup Kumar et al. (2022) Targeting S100A9-ALDH1A1-Retinoic Acid Signaling to Suppress Brain Relapse in EGFR-Mutant Lung Cancer.; Cancer Discov, 12: 1002-1021 |
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GSE190704 |
| Biswas, Debolina Dipankar et al. (2024) Respiratory neuropathology in Spinocerebellar ataxia type 7.; JCI Insight, [no vol.]: [no pages] |
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GSE271392 |
| Biswas, Jeetayu et al. (2020) MS2-TRIBE Evaluates Both Protein-RNA Interactions and Nuclear Organization of Transcription by RNA Editing.; iScience, 23: 101318 |
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GSE152855.2 GSE152855.1 |
| Bitard, Juliette et al. (2024) Uveitic glaucoma-like features in Yap conditional knockout mice.; Cell Death Discov, 10: 48 |
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GSE251685 |
| Biton, Moshe et al. (2018) T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation.; Cell, 175: 1307-1320.e22 |
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GSE106510.3 GSE106510.2 GSE106510.1 GSE106510.8 GSE106510.10 GSE106510.6 GSE106510.9 |
| Bizarro, Jonathan et al. (2021) Nopp140-chaperoned 2'-O-methylation of small nuclear RNAs in Cajal bodies ensures splicing fidelity.; Genes Dev, 35: 1123-1141 |
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GSE173171 |
| Biziotis, Olga-Demetra et al. (2023) Canagliflozin mediates tumor suppression alone and in combination with radiotherapy in non-small cell lung cancer (NSCLC) through inhibition of HIF-1α.; Mol Oncol, 17: 2235-2256 |
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GSE239495 |
| Bjerre, Christina et al. (2013) TIMP1 overexpression mediates resistance of MCF-7 human breast cancer cells to fulvestrant and down-regulates progesterone receptor expression.; Tumour Biol, 34: 3839-51 |
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GSE35535 |
| Bjerrum, Jacob Tveiten et al. (2010) Genome-wide gene expression analysis of mucosal colonic biopsies and isolated colonocytes suggests a continuous inflammatory state in the lamina propria of patients with quiescent ulcerative colitis.; Inflamm Bowel Dis, 16: 999-1007 |
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GSE13367 |
| Bjorkman, Sarah H et al. (2024) ATF4 expression in thermogenic adipocytes is required for cold-induced thermogenesis in mice via FGF21-independent mechanisms.; Sci Rep, 14: 1563 |
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GSE227060 |
| Bjorness, Theresa E et al. (2020) An essential role for MEF2C in the cortical response to loss of sleep in mice.; Elife, 9: [no pages] |
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GSE144957 |
| Bjornsdottir, Unnur S et al. (2011) Pathways activated during human asthma exacerbation as revealed by gene expression patterns in blood.; PLoS One, 6: e21902 |
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GSE19301 |
| Bjørnstad, Linn G et al. (2012) Human ALKBH4 interacts with proteins associated with transcription.; PLoS One, 7: e49045 |
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GSE39127 |
| Blaauboer, Marjolein E et al. (2013) Novel combination of collagen dynamics analysis and transcriptional profiling reveals fibrosis-relevant genes and pathways.; Matrix Biol, [no vol.]: [no pages] |
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GSE37635 |
| Blachly, James S et al. (2015) Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in chronic lymphocytic leukemia.; Proc Natl Acad Sci U S A, 112: 4322-7 |
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GSE66228 |
| Black, Joshua B et al. (2020) Master Regulators and Cofactors of Human Neuronal Cell Fate Specification Identified by CRISPR Gene Activation Screens.; Cell Rep, 33: 108460 |
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GSE159194 GSE159332 GSE159340 |
| Blackham, Samantha et al. (2010) Gene expression profiling indicates the roles of host oxidative stress, apoptosis, lipid metabolism, and intracellular transport genes in the replication of hepatitis C virus.; J Virol, 84: 5404-14 |
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GSE20948 |
| Blackmore, Stephen et al. (2017) Influenza infection triggers disease in a genetic model of experimental autoimmune encephalomyelitis.; Proc Natl Acad Sci U S A, 114: E6107-E6116 |
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GSE96870 |
| Blaeschke, Franziska et al. (2023) Modular pooled discovery of synthetic knockin sequences to program durable cell therapies.; Cell, 186: 4216-4234.e33 |
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GSE232818 GSE232817 GSE232821 |
| Blake, Bevin E et al. (2022) Transcriptional pathways linked to fetal and maternal hepatic dysfunction caused by gestational exposure to perfluorooctanoic acid (PFOA) or hexafluoropropylene oxide-dimer acid (HFPO-DA or GenX) in CD-1 mice.; Ecotoxicol Environ Saf, 248: 114314 |
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GSE199233 |
| Blalock, Eric M et al. (2003) Gene microarrays in hippocampal aging: statistical profiling identifies novel processes correlated with cognitive impairment.; J Neurosci, 23: 3807-19 |
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GSE854 |
| Blalock, Eric M et al. (2004) Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses.; Proc Natl Acad Sci U S A, 101: 2173-8 |
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GSE1297 |
| Blalock, Eric M et al. (2010) Effects of long-term pioglitazone treatment on peripheral and central markers of aging.; PLoS One, 5: e10405 |
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GSE20219 |
| Blalock, Eric M et al. (2011) Microarray analyses of laser-captured hippocampus reveal distinct gray and white matter signatures associated with incipient Alzheimer's disease.; J Chem Neuroanat, [no vol.]: [no pages] |
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GSE28146 |
| Blanchard, Alexa C et al. (2024) Mast cells proliferate in the peri-hippocampal space during early development and modulate local and peripheral immune cells.; Dev Cell, [no vol.]: [no pages] |
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GSE277694 |
| Blanchette, Marie et al. (2025) Regional heterogeneity of the blood-brain barrier.; Nat Commun, 16: 7332 |
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GSE165457 |
| Blanchette-Farra, Nicole et al. (2018) Contribution of three-dimensional architecture and tumor-associated fibroblasts to hepcidin regulation in breast cancer.; Oncogene, 37: 4013-4032 |
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GSE109733 |
| Blanchi, Bruno et al. (2023) EndoC-βH5 cells are storable and ready-to-use human pancreatic beta cells with physiological insulin secretion.; Mol Metab, 76: 101772 |
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GSE224660 |
| Blanco, Daniel Bastardo et al. (2022) PTEN directs developmental and metabolic signaling for innate-like T cell fate and tissue homeostasis.; Nat Cell Biol, 24: 1642-1654 |
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GSE206462 GSE152294 |
| Blanco-Suarez, Elena et al. (2018) Astrocyte-Secreted Chordin-like 1 Drives Synapse Maturation and Limits Plasticity by Increasing Synaptic GluA2 AMPA Receptors.; Neuron, 100: 1116-1132.e13 |
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GSE108483 GSE108484 |
| Blank, Bryant S et al. (2014) Misregulation of the broad-range phospholipase C activity increases the susceptibility of Listeria monocytogenes to intracellular killing by neutrophils.; Microbes Infect, 16: 104-13 |
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GSE49820 |
| Blank, Thomas et al. (2016) Brain Endothelial- and Epithelial-Specific Interferon Receptor Chain 1 Drives Virus-Induced Sickness Behavior and Cognitive Impairment.; Immunity, 44: 901-12 |
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GSE74063 GSE74061 |
| Blaskovic, Sanja et al. (2020) Gestation and lactation exposure to nicotine induces transient postnatal changes in lung alveolar development.; Am J Physiol Lung Cell Mol Physiol, 318: L606-L618 |
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GSE102239 |
| Blaskovic, Sanja et al. (2022) Early life exposure to nicotine modifies lung gene response after elastase-induced emphysema.; Respir Res, 23: 44 |
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GSE167567 GSE167568 |
| Blatner, Nichole R et al. (2012) Expression of ROR?t marks a pathogenic regulatory T cell subset in human colon cancer.; Sci Transl Med, 4: 164ra159 |
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GSE41229 |
| Blaveri, Ekaterini et al. (2010) Expression profiling of a genetic animal model of depression reveals novel molecular pathways underlying depressive-like behaviours.; PLoS One, 5: e12596 |
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GSE20388 |
| Blaxall, Burns C et al. (2003) Differential myocardial gene expression in the development and rescue of murine heart failure.; Physiol Genomics, 15: 105-14 |
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GSE670 |
| Blaze, J et al. (2021) Neuronal Nsun2 deficiency produces tRNA epitranscriptomic alterations and proteomic shifts impacting synaptic signaling and behavior.; Nat Commun, 12: 4913 |
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GSE165202 |
| Blaze, Jennifer et al. (2020) Blast-Related Mild TBI Alters Anxiety-Like Behavior and Transcriptional Signatures in the Rat Amygdala.; Front Behav Neurosci, 14: 160 |
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GSE155393 |
| Blazquez, Raquel et al. (2022) Intralesional TLR4 agonist treatment strengthens the organ defense against colonizing cancer cells in the brain.; Oncogene, 41: 5008-5019 |
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GSE196519 |
| Bleharski, Joshua R et al. (2003) Use of genetic profiling in leprosy to discriminate clinical forms of the disease.; Science, 301: 1527-30 |
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GSE443 |
| Bleich, Andre et al. (2010) Cdcs1 a major colitis susceptibility locus in mice; subcongenic analysis reveals genetic complexity.; Inflamm Bowel Dis, 16: 765-75 |
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GSE15318 |
| Blencowe, Montgomery et al. (2022) Relative contributions of sex hormones, sex chromosomes, and gonads to sex differences in tissue gene regulation.; Genome Res, 32: 807-824 |
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GSE176033 |
| Blischak, John D et al. (2015) Mycobacterial infection induces a specific human innate immune response.; Sci Rep, 5: 16882 |
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GSE67427 |
| Block, Carina L et al. (2022) Prenatal environmental stressors impair postnatal microglia function and adult behavior in males.; Cell Rep, 40: 111161 |
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GSE160344 |
| Bloedjes, Timon A et al. (2020) AKT signaling restrains tumor suppressive functions of FOXO transcription factors and GSK3 kinase in multiple myeloma.; Blood Adv, 4: 4151-4164 |
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GSE120940 |
| Blohmke, Christoph J et al. (2012) Atypical activation of the unfolded protein response in cystic fibrosis airway cells contributes to p38 MAPK-mediated innate immune responses.; J Immunol, [no vol.]: [no pages] |
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GSE35391 |
| Blomberg, K Emelie M et al. (2009) Transcriptional signatures of Itk-deficient CD3+, CD4+ and CD8+ T-cells.; BMC Genomics, 10: 233 |
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GSE12464 GSE12465 |
| Blomfield, Isabelle Maria et al. (2019) Id4 promotes the elimination of the pro-activation factor Ascl1 to maintain quiescence of adult hippocampal stem cells.; Elife, 8: [no pages] |
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GSE116997 |
| Bloom, Chloe I et al. (2012) Detectable changes in the blood transcriptome are present after two weeks of antituberculosis therapy.; PLoS One, 7: e46191 |
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GSE40553 |
| Bloom, Chloe I et al. (2013) Transcriptional blood signatures distinguish pulmonary tuberculosis, pulmonary sarcoidosis, pneumonias and lung cancers.; PLoS One, 8: e70630 |
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GSE42832 GSE42831 GSE42830 GSE42825 GSE42827 GSE42826 |
| Blot, Guillaume et al. (2023) Perilipin 2-positive mononuclear phagocytes accumulate in the diabetic retina and promote PPARγ-dependent vasodegeneration.; J Clin Invest, 133: [no pages] |
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GSE239512 |
| Bludau, Anna et al. (2023) Functional involvement of septal miR-132 in extinction and oxytocin-mediated reversal of social fear.; Mol Psychiatry, [no vol.]: [no pages] |
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GSE211449 |
| Blum, Jordan M et al. (2013) Distinct and overlapping sarcoma subtypes initiated from muscle stem and progenitor cells.; Cell Rep, 5: 933-40 |
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GSE46836 |
| Blumenreich, Shani et al. (2020) Substrate reduction therapy using Genz-667161 reduces levels of pathogenic components in a mouse model of neuronopathic forms of Gaucher disease.; J Neurochem, [no vol.]: [no pages] |
|
GSE151133 |
| Blättler, Sharon M et al. (2012) Defective mitochondrial morphology and bioenergetic function in mice lacking the transcription factor Yin Yang 1 in skeletal muscle.; Mol Cell Biol, 32: 3333-46 |
|
GSE39009 |
| Blüthgen, Nils et al. (2017) Profiling the MAPK/ERK dependent and independent activity regulated transcriptional programs in the murine hippocampus in vivo.; Sci Rep, 7: 45101 |
|
GSE88723 |
| Bo, Michele Dal et al. (2010) MDM4 (MDMX) is overexpressed in chronic lymphocytic leukaemia (CLL) and marks a subset of p53wild-type CLL with a poor cytotoxic response to Nutlin-3.; Br J Haematol, 150: 237-9 |
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GSE18971 |
| Boato, Francesco et al. (2023) Activation of MAP2K signaling by genetic engineering or HF-rTMS promotes corticospinal axon sprouting and functional regeneration.; Sci Transl Med, 15: eabq6885 |
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GSE201350 |
| Bobowski-Gerard, Marie et al. (2022) Functional genomics uncovers the transcription factor BNC2 as required for myofibroblastic activation in fibrosis.; Nat Commun, 13: 5324 |
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GSE185527 |
| Bochkov, Y A et al. (2010) Rhinovirus-induced modulation of gene expression in bronchial epithelial cells from subjects with asthma.; Mucosal Immunol, 3: 69-80 |
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GSE13396 |
| Bochner, Ron et al. (2013) Phosphatidylserine increases IKBKAP levels in a humanized knock-in IKBKAP mouse model.; Hum Mol Genet, 22: 2785-94 |
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GSE45580 |
| Bock, Christoph et al. (2011) Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines.; Cell, 144: 439-52 |
|
GSE25970 |
| Boeck, Myriam et al. (2020) Temporospatial distribution and transcriptional profile of retinal microglia in the oxygen-induced retinopathy mouse model.; Glia, [no vol.]: [no pages] |
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GSE132731 |