List of all 17,702 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Bianco, Stéphanie et al. (2014) LRH-1 governs vital transcriptional programs in endocrine-sensitive and -resistant breast cancer cells.; Cancer Res, 74: 2015-25 |
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GSE54891 |
| Biase, Fernando H et al. (2014) Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing.; Genome Res, 24: 1787-96 |
|
GSE57249 |
| Bidinotto, Lucas Tadeu et al. (2012) Fish oil alters tamoxifen-modulated expression of mRNAs that encode genes related to differentiation, proliferation, metastasis, and immune response in rat mammary tumors.; Nutr Cancer, 64: 991-9 |
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GSE27465 |
| Bido, Simone et al. (2021) Microglia-specific overexpression of α-synuclein leads to severe dopaminergic neurodegeneration by phagocytic exhaustion and oxidative toxicity.; Nat Commun, 12: 6237 |
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GSE157533 |
| Bieback, Karen et al. (2010) Altered gene expression in human adipose stem cells cultured with fetal bovine serum compared to human supplements.; Tissue Eng Part A, 16: 3467-84 |
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GSE23851 |
| Biedka, Stephanie et al. (2024) One-pot method for preparing DNA, RNA, and protein for multiomics analysis.; Commun Biol, 7: 324 |
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GSE241432 |
| Bieging, Kathryn T et al. (2011) A shared gene expression signature in mouse models of EBV-associated and non-EBV-associated Burkitt lymphoma.; Blood, 118: 6849-59 |
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GSE26918 |
| Bielefeld, P et al. (2024) Traumatic brain injury promotes neurogenesis at the cost of astrogliogenesis in the adult hippocampus of male mice.; Nat Commun, 15: 5222 |
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GSE230942 |
| Bielinska, Anna U et al. (2014) Distinct pathways of humoral and cellular immunity induced with the mucosal administration of a nanoemulsion adjuvant.; J Immunol, 192: 2722-33 |
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GSE51804 |
| Bienkowska, Jadwiga R et al. (2009) Convergent Random Forest predictor: methodology for predicting drug response from genome-scale data applied to anti-TNF response.; Genomics, 94: 423-32 |
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GSE15258 |
| Bienvenu, Frédéric et al. (2010) Transcriptional role of cyclin D1 in development revealed by a genetic-proteomic screen.; Nature, 463: 374-8 |
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GSE13635 |
| Bierne, Hélène et al. (2009) Human BAHD1 promotes heterochromatic gene silencing.; Proc Natl Acad Sci U S A, 106: 13826-31 |
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GSE16097 |
| Biewenga, Petra et al. (2008) Gene expression in early stage cervical cancer.; Gynecol Oncol, 108: 520-6 |
|
GSE7410 |
| Bifsha, Panojot et al. (2014) Rgs6 is required for adult maintenance of dopaminergic neurons in the ventral substantia nigra.; PLoS Genet, 10: e1004863 |
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GSE75777 |
| Biggs O'May, Joshua et al. (2025) WNK1-dependent water influx is required for CD4+T cell activation and T cell-dependent antibody responses.; Nat Commun, 16: 1857 |
|
GSE201228 |
| Bigio, Benedetta et al. (2016) Epigenetics and energetics in ventral hippocampus mediate rapid antidepressant action: Implications for treatment resistance.; Proc Natl Acad Sci U S A, 113: 7906-11 |
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GSE83336 |
| Biglari, Nasim et al. (2021) Functionally distinct POMC-expressing neuron subpopulations in hypothalamus revealed by intersectional targeting.; Nat Neurosci, 24: 913-929 |
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GSE153753 |
| Bigler, Jeannette et al. (2013) Cross-study homogeneity of psoriasis gene expression in skin across a large expression range.; PLoS One, 8: e52242 |
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GSE41662 GSE34248 |
| Bigler, Rebecca L et al. (2017) Messenger RNAs localized to distal projections of human stem cell derived neurons.; Sci Rep, 7: 611 |
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GSE84975 |
| Bijangi-Vishehsaraei, Khadijeh et al. (2016) Microarray Analysis Gene Expression Profiles in Laryngeal Muscle After Recurrent Laryngeal Nerve Injury.; Ann Otol Rhinol Laryngol, 125: 247-56 |
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GSE72361 |
| Bijkerk, Roel et al. (2016) Silencing of microRNA-132 reduces renal fibrosis by selectively inhibiting myofibroblast proliferation.; Kidney Int, 89: 1268-80 |
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GSE76548 |
| Bik-Multanowski, Miroslaw et al. (2015) MTRNR2L12: A Candidate Blood Marker of Early Alzheimer's Disease-Like Dementia in Adults with Down Syndrome.; J Alzheimers Dis, 46: 145-50 |
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GSE63870 |
| Bikoff, Jay B et al. (2016) Spinal Inhibitory Interneuron Diversity Delineates Variant Motor Microcircuits.; Cell, 165: 207-219 |
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GSE69560 |
| Bilban, Martin et al. (2006) Carbon monoxide orchestrates a protective response through PPARgamma.; Immunity, 24: 601-10 |
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GSE1906 |
| Bilbao, Ainhoa et al. (2008) Loss of the Ca2+/calmodulin-dependent protein kinase type IV in dopaminoceptive neurons enhances behavioral effects of cocaine.; Proc Natl Acad Sci U S A, 105: 17549-54 |
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GSE10869 |
| Bild, Andrea H et al. (2006) Oncogenic pathway signatures in human cancers as a guide to targeted therapies.; Nature, 439: 353-7 |
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GSE3151 GSE3141 GSE3143 GSE3156 GSE3149 |
| Bildsoe, Heidi et al. (2016) Transcriptional targets of TWIST1 in the cranial mesoderm regulate cell-matrix interactions and mesenchyme maintenance.; Dev Biol, 418: 189-203 |
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GSE80335 |
| Bilinska, Katarzyna et al. (2020) Expression of the SARS-CoV-2 Entry Proteins, ACE2 and TMPRSS2, in Cells of the Olfactory Epithelium: Identification of Cell Types and Trends with Age.; ACS Chem Neurosci, 11: 1555-1562 |
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GSE147771 |
| Bilke, Sven et al. (2013) Oncogenic ETS fusions deregulate E2F3 target genes in Ewing sarcoma and prostate cancer.; Genome Res, 23: 1797-809 |
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GSE27524 |
| Bilkei-Gorzo, Andras et al. (2017) A chronic low dose of ?9-tetrahydrocannabinol (THC) restores cognitive function in old mice.; Nat Med, 23: 782-787 |
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GSE57823 GSE58437 |
| Billipp, Tyler E et al. (2024) Tuft cell-derived acetylcholine promotes epithelial chloride secretion and intestinal helminth clearance.; Immunity, 57: 1243-1259.e8 |
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GSE262198 |
| Billmann-Born, Susanne et al. (2011) Genome-wide expression profiling identifies an impairment of negative feedback signals in the Crohn's disease-associated NOD2 variant L1007fsinsC.; J Immunol, 186: 4027-38 |
|
GSE22611 |
| Billottet, Clotilde et al. (2008) Modulation of several waves of gene expression during FGF-1 induced epithelial-mesenchymal transition of carcinoma cells.; J Cell Biochem, 104: 826-39 |
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GSE5664 |
| Billups, Stephen C et al. (2009) Identifying significant temporal variation in time course microarray data without replicates.; BMC Bioinformatics, 10: 96 |
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GSE12289 |
| Bilsland, Alan E et al. (2015) Identification of a Selective G1-Phase Benzimidazolone Inhibitor by a Senescence-Targeted Virtual Screen Using Artificial Neural Networks.; Neoplasia, 17: 704-715 |
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GSE72621 |
| Bin Imtiaz, Muhammad Khadeesh et al. (2021) Declining lamin B1 expression mediates age-dependent decreases of hippocampal stem cell activity.; Cell Stem Cell, [no vol.]: [no pages] |
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GSE163795 |
| Binder, Stefanie et al. (2020) Master and servant: LINC00152 - a STAT3-induced long noncoding RNA regulates STAT3 in a positive feedback in human multiple myeloma.; BMC Med Genomics, 13: 22 |
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GSE71092 |
| Bingel, Corinna et al. (2017) Three-dimensional tumor cell growth stimulates autophagic flux and recapitulates chemotherapy resistance.; Cell Death Dis, 8: e3013 |
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GSE100020 |
| Birck, Cindy et al. (2016) Transcriptomic analyses of primary astrocytes under TNF? treatment.; Genom Data, 7: 7-11 |
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GSE73022 |
| Birck, Cindy et al. (2021) NF-κB and TNF Affect the Astrocytic Differentiation from Neural Stem Cells.; Cells, 10: [no pages] |
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GSE117736 |
| Birger, Yehudit et al. (2013) Perturbation of fetal hematopoiesis in a mouse model of Down syndrome's transient myeloproliferative disorder.; Blood, 122: 988-98 |
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GSE46481 |
| Birkenfeld, Andreas L et al. (2011) Deletion of the mammalian INDY homolog mimics aspects of dietary restriction and protects against adiposity and insulin resistance in mice.; Cell Metab, 14: 184-95 |
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GSE11845 |
| Birks, Diane K et al. (2013) Pediatric rhabdoid tumors of kidney and brain show many differences in gene expression but share dysregulation of cell cycle and epigenetic effector genes.; Pediatr Blood Cancer, 60: 1095-102 |
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GSE35493 |
| Birnbaum, David J et al. (2012) Expression Profiles in Stage II Colon Cancer According to APC Gene Status.; Transl Oncol, 5: 72-6 |
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GSE26906 |
| Birnbaum, Emily M et al. (2024) BT-11 repurposing potential for Alzheimer's disease and insights into its mode of actions.; bioRxiv, [no vol.]: [no pages] |
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GSE280023 GSE280024 |
| Birnie, Matthew T et al. (2023) Circadian regulation of hippocampal function is disrupted with corticosteroid treatment.; Proc Natl Acad Sci U S A, 120: e2211996120 |
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GSE223761 GSE224038 |
| Birocchi, Filippo et al. (2022) Targeted inducible delivery of immunoactivating cytokines reprograms glioblastoma microenvironment and inhibits growth in mouse models.; Sci Transl Med, 14: eabl4106 |
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GSE197761 |
| Biros, Erik et al. (2014) Differential gene expression in the proximal neck of human abdominal aortic aneurysm.; Atherosclerosis, 233: 211-8 |
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GSE47472 |
| Birt, Isabelle A et al. (2020) Genetic Liability for Internalizing Versus Externalizing Behavior Manifests in the Developing and Adult Hippocampus: Insight From a Meta-analysis of Transcriptional Profiling Studies in a Selectively Bred Rat Model.; Biol Psychiatry, [no vol.]: [no pages] |
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GSE140594 GSE140598 GSE140597 GSE140596 GSE140287 GSE140595 |
| Birtele, Marcella et al. (2019) Dual modulation of neuron-specific microRNAs and the REST complex promotes functional maturation of human adult induced neurons.; FEBS Lett, 593: 3370-3380 |
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GSE132154 |
| Bischoff, Florian C et al. (2017) Identification and Functional Characterization of Hypoxia-Induced Endoplasmic Reticulum Stress Regulating lncRNA (HypERlnc) in Pericytes.; Circ Res, 121: 368-375 |
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GSE84730 |
| Bisen, Shivantika et al. (2024) A neutrophil elastase-generated mature form of IL-33 is a potent regulator of endothelial cell activation and proliferative retinopathy.; Exp Mol Med, 56: 1703-1716 |
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GSE245784 |
| Bisikirska, Brygida et al. (2016) Elucidation and Pharmacological Targeting of Novel Molecular Drivers of Follicular Lymphoma Progression.; Cancer Res, 76: 664-74 |
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GSE66714 |
| Bisping, Egbert et al. (2006) Gata4 is required for maintenance of postnatal cardiac function and protection from pressure overload-induced heart failure.; Proc Natl Acad Sci U S A, 103: 14471-6 |
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GSE5500 |
| Bissonnette, Robert et al. (2016) Based on Molecular Profiling of Gene Expression, Palmoplantar Pustulosis and Palmoplantar Pustular Psoriasis Are Highly Related Diseases that Appear to Be Distinct from Psoriasis Vulgaris.; PLoS One, 11: e0155215 |
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GSE80047 |
| Biswas, Anup Kumar et al. (2022) Targeting S100A9-ALDH1A1-Retinoic Acid Signaling to Suppress Brain Relapse in EGFR-Mutant Lung Cancer.; Cancer Discov, 12: 1002-1021 |
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GSE190704 |
| Biswas, Debolina Dipankar et al. (2024) Respiratory neuropathology in Spinocerebellar ataxia type 7.; JCI Insight, [no vol.]: [no pages] |
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GSE271392 |
| Biswas, Jeetayu et al. (2020) MS2-TRIBE Evaluates Both Protein-RNA Interactions and Nuclear Organization of Transcription by RNA Editing.; iScience, 23: 101318 |
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GSE152855.2 GSE152855.1 |
| Bitarafan, Sara et al. (2025) Frequency and duration of sensory flicker control transcriptional profiles in 5xFAD mice.; APL Bioeng, 9: 036102 |
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GSE255004 |
| Bitard, Juliette et al. (2024) Uveitic glaucoma-like features in Yap conditional knockout mice.; Cell Death Discov, 10: 48 |
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GSE251685 |
| Biton, Moshe et al. (2018) T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation.; Cell, 175: 1307-1320.e22 |
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GSE106510.3 GSE106510.2 GSE106510.1 GSE106510.8 GSE106510.10 GSE106510.6 GSE106510.9 |
| Bizarro, Jonathan et al. (2021) Nopp140-chaperoned 2'-O-methylation of small nuclear RNAs in Cajal bodies ensures splicing fidelity.; Genes Dev, 35: 1123-1141 |
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GSE173171 |
| Biziotis, Olga-Demetra et al. (2023) Canagliflozin mediates tumor suppression alone and in combination with radiotherapy in non-small cell lung cancer (NSCLC) through inhibition of HIF-1α.; Mol Oncol, 17: 2235-2256 |
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GSE239495 |
| Bjerre, Christina et al. (2013) TIMP1 overexpression mediates resistance of MCF-7 human breast cancer cells to fulvestrant and down-regulates progesterone receptor expression.; Tumour Biol, 34: 3839-51 |
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GSE35535 |
| Bjerrum, Jacob Tveiten et al. (2010) Genome-wide gene expression analysis of mucosal colonic biopsies and isolated colonocytes suggests a continuous inflammatory state in the lamina propria of patients with quiescent ulcerative colitis.; Inflamm Bowel Dis, 16: 999-1007 |
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GSE13367 |
| Bjorkman, Sarah H et al. (2024) ATF4 expression in thermogenic adipocytes is required for cold-induced thermogenesis in mice via FGF21-independent mechanisms.; Sci Rep, 14: 1563 |
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GSE227060 |
| Bjorness, Theresa E et al. (2020) An essential role for MEF2C in the cortical response to loss of sleep in mice.; Elife, 9: [no pages] |
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GSE144957 |
| Bjornsdottir, Unnur S et al. (2011) Pathways activated during human asthma exacerbation as revealed by gene expression patterns in blood.; PLoS One, 6: e21902 |
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GSE19301 |
| Bjørnstad, Linn G et al. (2012) Human ALKBH4 interacts with proteins associated with transcription.; PLoS One, 7: e49045 |
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GSE39127 |
| Blaauboer, Marjolein E et al. (2013) Novel combination of collagen dynamics analysis and transcriptional profiling reveals fibrosis-relevant genes and pathways.; Matrix Biol, [no vol.]: [no pages] |
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GSE37635 |
| Blachly, James S et al. (2015) Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in chronic lymphocytic leukemia.; Proc Natl Acad Sci U S A, 112: 4322-7 |
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GSE66228 |
| Black, Joshua B et al. (2020) Master Regulators and Cofactors of Human Neuronal Cell Fate Specification Identified by CRISPR Gene Activation Screens.; Cell Rep, 33: 108460 |
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GSE159194 GSE159332 GSE159340 |
| Blackham, Samantha et al. (2010) Gene expression profiling indicates the roles of host oxidative stress, apoptosis, lipid metabolism, and intracellular transport genes in the replication of hepatitis C virus.; J Virol, 84: 5404-14 |
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GSE20948 |
| Blackmore, Stephen et al. (2017) Influenza infection triggers disease in a genetic model of experimental autoimmune encephalomyelitis.; Proc Natl Acad Sci U S A, 114: E6107-E6116 |
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GSE96870 |
| Blaeschke, Franziska et al. (2023) Modular pooled discovery of synthetic knockin sequences to program durable cell therapies.; Cell, 186: 4216-4234.e33 |
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GSE232818 GSE232817 GSE232821 |
| Blake, Bevin E et al. (2022) Transcriptional pathways linked to fetal and maternal hepatic dysfunction caused by gestational exposure to perfluorooctanoic acid (PFOA) or hexafluoropropylene oxide-dimer acid (HFPO-DA or GenX) in CD-1 mice.; Ecotoxicol Environ Saf, 248: 114314 |
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GSE199233 |