List of all 16,735 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Bonev, Boyan et al. (2017) Multiscale 3D Genome Rewiring during Mouse Neural Development.; Cell, 171: 557-572.e24 |
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GSE96107 |
| Boneva, Stefaniya Konstantinova et al. (2020) Transcriptional Profiling Uncovers Human Hyalocytes as a Unique Innate Immune Cell Population.; Front Immunol, 11: 567274 |
|
GSE147657 |
| Boneva, Stefaniya Konstantinova et al. (2021) In-Depth Molecular Characterization of Neovascular Membranes Suggests a Role for Hyalocyte-to-Myofibroblast Transdifferentiation in Proliferative Diabetic Retinopathy.; Front Immunol, 12: 757607 |
|
GSE179568 |
| Bonfanti, Paola et al. (2010) Microenvironmental reprogramming of thymic epithelial cells to skin multipotent stem cells.; Nature, 466: 978-82 |
|
GSE21686 |
| Bonnefoi, Hervé et al. (2007) Validation of gene signatures that predict the response of breast cancer to neoadjuvant chemotherapy: a substudy of the EORTC 10994/BIG 00-01 clinical trial.; Lancet Oncol, 8: 1071-8 |
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GSE6861 |
| Bonnefont, Jerome et al. [Unknown date]Cortical Neurogenesis Requires Bcl6-Mediated Transcriptional Repression of Multiple Self-Renewal-Promoting Extrinsic Pathways.; Neuron, 103: 1096-1108.e4 |
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GSE133031 |
| Bonney, Stephanie et al. (2013) Cardiac Per2 functions as novel link between fatty acid metabolism and myocardial inflammation during ischemia and reperfusion injury of the heart.; PLoS One, 8: e71493 |
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GSE45818 |
| Bonome, Tomas et al. (2008) A gene signature predicting for survival in suboptimally debulked patients with ovarian cancer.; Cancer Res, 68: 5478-86 |
|
GSE26712 |
| Bonow, R H et al. (2009) The brain expression of genes involved in inflammatory response, the ribosome, and learning and memory is altered by centrally injected lipopolysaccharide in mice.; Pharmacogenomics J, [no vol.]: [no pages] |
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GSE12284 |
| Bonthuis, Paul J et al. (2015) Noncanonical Genomic Imprinting Effects in Offspring.; Cell Rep, 12: 979-91 |
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GSE70484 |
| Bonzheim, Irina et al. (2013) Identification of C/EBP? target genes in ALK+ anaplastic large cell lymphoma (ALCL) by gene expression profiling and chromatin immunoprecipitation.; PLoS One, 8: e64544 |
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GSE23368 |
| Bonzo, Jessica A et al. (2012) Suppression of hepatocyte proliferation by hepatocyte nuclear factor 4? in adult mice.; J Biol Chem, 287: 7345-56 |
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GSE34581 |
| Boobalan, Elangovan et al. (2022) Zfp503/Nlz2 Is Required for RPE Differentiation and Optic Fissure Closure.; Invest Ophthalmol Vis Sci, 63: 5 |
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GSE180641 |
| Booher, Winona C et al. (2022) Hippocampal RNA sequencing in mice selectively bred for high and low activity.; Genes Brain Behav, [no vol.]: e12832 |
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GSE200043 |
| Booms, Alix et al. (2024) Parkinson's disease risk enhancers in microglia.; iScience, 27: 108921 |
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GSE245523 |
| Boon, Adrianus C M et al. (2009) Host genetic variation affects resistance to infection with a highly pathogenic H5N1 influenza A virus in mice.; J Virol, 83: 10417-26 |
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GSE64750 |
| Boon, Ruben et al. (2020) Amino acid levels determine metabolism and CYP450 function of hepatocytes and hepatoma cell lines.; Nat Commun, 11: 1393 |
|
GSE121905 |
| Boone, Deborah R et al. (2017) Effects of AAV-mediated knockdown of nNOS and GPx-1 gene expression in rat hippocampus after traumatic brain injury.; PLoS One, 12: e0185943 |
|
GSE92363 |
| Boone, Nathalie et al. (2012) Genome-wide analysis of familial dysautonomia and kinetin target genes with patient olfactory ecto-mesenchymal stem cells.; Hum Mutat, 33: 530-40 |
|
GSE27915 |
| Boonyaratanakornkit, Jim B et al. (2009) The C proteins of human parainfluenza virus type 1 (HPIV1) control the transcription of a broad array of cellular genes that would otherwise respond to HPIV1 infection.; J Virol, 83: 1892-910 |
|
GSE12664 |
| Boot, James et al. (2022) Global hypo-methylation in a proportion of glioblastoma enriched for an astrocytic signature is associated with increased invasion and altered immune landscape.; Elife, 11: [no pages] |
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GSE196418 |
| Booth, Heather D E et al. (2019) RNA sequencing reveals MMP2 and TGFB1 downregulation in LRRK2 G2019S Parkinson's iPSC-derived astrocytes.; Neurobiol Dis, 129: 56-66 |
|
GSE120306 |
| Booth, Stephanie et al. (2004) Identification of central nervous system genes involved in the host response to the scrapie agent during preclinical and clinical infection.; J Gen Virol, 85: 3459-71 |
|
GSE1840 |
| Bootsma, Hester J et al. (2007) Analysis of the in vitro transcriptional response of human pharyngeal epithelial cells to adherent Streptococcus pneumoniae: evidence for a distinct response to encapsulated strains.; Infect Immun, 75: 5489-99 |
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GSE8527 |
| Borbely, Gabor et al. (2015) Induction of USP17 by combining BET and HDAC inhibitors in breast cancer cells.; Oncotarget, 6: 33623-35 |
|
GSE65495 |
| Borcherding, Nicholas et al. (2015) Paracrine WNT5A Signaling Inhibits Expansion of Tumor-Initiating Cells.; Cancer Res, 75: 1972-82 |
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GSE64487 |
| Borczuk, Alain C et al. (2011) Progression of human bronchioloalveolar carcinoma to invasive adenocarcinoma is modeled in a transgenic mouse model of K-ras-induced lung cancer by loss of the TGF-? type II receptor.; Cancer Res, 71: 6665-75 |
|
GSE27716 |
| Borders, A S et al. (2007) Macrophage-mediated neuroprotection and neurogenesis in the olfactory epithelium.; Physiol Genomics, 31: 531-43 |
|
GSE6540 |
| Bordignon, Pino et al. (2019) Dualism of FGF and TGF-β Signaling in Heterogeneous Cancer-Associated Fibroblast Activation with ETV1 as a Critical Determinant.; Cell Rep, 28: 2358-2372.e6 |
|
GSE122371 |
| Bordin, Diana L et al. (2024) Loss of alkyladenine DNA glycosylase alters gene expression in the developing mouse brain and leads to reduced anxiety and improved memory.; DNA Repair (Amst), 135: 103632 |
|
GSE243469 |
| Bordon, Alain et al. (2008) Enforced expression of the transcriptional coactivator OBF1 impairs B cell differentiation at the earliest stage of development.; PLoS One, 3: e4007 |
|
GSE12421 |
| Borenshtein, Diana et al. (2008) Diarrhea as a cause of mortality in a mouse model of infectious colitis.; Genome Biol, 9: R122 |
|
GSE8025 |
| Borgan, Eldrid et al. (2013) Subtype-specific response to bevacizumab is reflected in the metabolome and transcriptome of breast cancer xenografts.; Mol Oncol, 7: 130-42 |
|
GSE37543 |
| Borges, Karin et al. (2007) Gene expression changes after seizure preconditioning in the three major hippocampal cell layers.; Neurobiol Dis, 26: 66-77 |
|
GSE1994 |
| Borggrewe, Malte et al. (2021) Regionally diverse astrocyte subtypes and their heterogeneous response to EAE.; Glia, 69: 1140-1154 |
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GSE136358.2 GSE136358.1 |
| Borgognone, Alessandra et al. (2024) Lamivudine modulates the expression of neurological impairment-related genes and LINE-1 retrotransposons in brain tissues of a Down syndrome mouse model.; Front Aging Neurosci, 16: 1386944 |
|
GSE252135 |
| Borisova, Ekaterina et al. (2024) Protein translation rate determines neocortical neuron fate.; Nat Commun, 15: 4879 |
|
GSE172489 |
| Borjabad, Alejandra et al. (2010) Gene expression profiles of HIV-1-infected glia and brain: toward better understanding of the role of astrocytes in HIV-1-associated neurocognitive disorders.; J Neuroimmune Pharmacol, 5: 44-62 |
|
GSE17383 |
| Borjabad, Alejandra et al. (2011) Significant effects of antiretroviral therapy on global gene expression in brain tissues of patients with HIV-1-associated neurocognitive disorders.; PLoS Pathog, 7: e1002213 |
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GSE28160 |
| Borjabad, Alejandra et al. (2024) Innate immune responses reverse HIV cognitive disease in mice: Profile by RNAseq in the brain.; Virology, 589: 109917 |
|
GSE245947 |
| Borjesson, Dori L et al. (2005) Insights into pathogen immune evasion mechanisms: Anaplasma phagocytophilum fails to induce an apoptosis differentiation program in human neutrophils.; J Immunol, 174: 6364-72 |
|
GSE2405 |
| Borkowski, Robert et al. (2015) Genetic mutation of p53 and suppression of the miR-17∼92 cluster are synthetic lethal in non-small cell lung cancer due to upregulation of vitamin D Signaling.; Cancer Res, 75: 666-75 |
|
GSE64007 |
| Borland, Gillian et al. (2016) Addiction to Runx1 is partially attenuated by loss of p53 in the Eµ-Myc lymphoma model.; Oncotarget, 7: 22973-87 |
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GSE78001 |
| Bornstein, Bavat et al. (2023) Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.; Elife, 12: [no pages] |
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GSE208147 |
| Bornstein, Chamutal et al. (2014) A negative feedback loop of transcription factors specifies alternative dendritic cell chromatin States.; Mol Cell, 56: 749-62 |
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GSE62704 |
| Borovecki, F et al. (2005) Genome-wide expression profiling of human blood reveals biomarkers for Huntington's disease.; Proc Natl Acad Sci U S A, 102: 11023-8 |
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GSE1751 |
| Borrelli, Kristyn N et al. (2021) Sex Differences in Behavioral and Brainstem Transcriptomic Neuroadaptations following Neonatal Opioid Exposure in Outbred Mice.; eNeuro, 8: [no pages] |
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GSE141066 |
| Borrelli, Kristyn N et al. (2023) Decreased myelin-related gene expression in the nucleus accumbens during spontaneous neonatal opioid withdrawal in the absence of long-term behavioral effects in adult outbred CFW mice.; Neuropharmacology, 240: 109732 |
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GSE239919 |
| Borromeo, Mark D et al. (2014) A transcription factor network specifying inhibitory versus excitatory neurons in the dorsal spinal cord.; Development, 141: 2803-12 |
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GSE55831 |
| Borràs-Fresneda, Mireia et al. (2016) Differences in DNA Repair Capacity, Cell Death and Transcriptional Response after Irradiation between a Radiosensitive and a Radioresistant Cell Line.; Sci Rep, 6: 27043 |
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GSE80207 |
| Borst, Sara et al. (2021) Study of inherited thrombocytopenia resulting from mutations in ETV6 or RUNX1 using a human pluripotent stem cell model.; Stem Cell Reports, 16: 1458-1467 |
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GSE168326 |
| Bortner, Carl D et al. (2022) Overcoming apoptotic resistance afforded by Bcl-2 in lymphoid tumor cells: a critical role for dexamethasone.; Cell Death Discov, 8: 494 |
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GSE210375 |
| Bortolozzi, Roberta et al. (2018) AKR1C enzymes sustain therapy resistance in paediatric T-ALL.; Br J Cancer, 118: 985-994 |
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GSE87865 |
| Bos, Paula D et al. (2009) Genes that mediate breast cancer metastasis to the brain.; Nature, 459: 1005-9 |
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GSE12276 GSE12237 |
| Bosch, Ana et al. (2015) PI3K inhibition results in enhanced estrogen receptor function and dependence in hormone receptor-positive breast cancer.; Sci Transl Med, 7: 283ra51 |
|
GSE64033 |
| Boschen, Karen E et al. (2021) Transcriptomic analyses of gastrulation-stage mouse embryos with differential susceptibility to alcohol.; Dis Model Mech, 14: [no pages] |
|
GSE163796 |
| Boschen, Karen E et al. (2022) Short-term transcriptomic changes in the mouse neural tube induced by an acute alcohol exposure.; Alcohol, [no vol.]: [no pages] |
|
GSE199646 |
| Bosco, A et al. (2010) Decreased activation of inflammatory networks during acute asthma exacerbations is associated with chronic airflow obstruction.; Mucosal Immunol, 3: 399-409 |
|
GSE19903 |
| Bosco, Anthony et al. (2009) A network modeling approach to analysis of the Th2 memory responses underlying human atopic disease.; J Immunol, 182: 6011-21 |
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GSE14908 |
| Bosco, Anthony et al. (2012) Interferon regulatory factor 7 is a major hub connecting interferon-mediated responses in virus-induced asthma exacerbations in vivo.; J Allergy Clin Immunol, 129: 88-94 |
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GSE30326 |
| Bosco, Nazario et al. (2023) KaryoCreate: A CRISPR-based technology to study chromosome-specific aneuploidy by targeting human centromeres.; Cell, 186: 1985-2001.e19 |
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GSE217325 |
| Bose, Rohit et al. (2017) ERF mutations reveal a balance of ETS factors controlling prostate oncogenesis.; Nature, 546: 671-675 |
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GSE83652 |
| Bose, Shikha et al. (2009) The ATM tumour suppressor gene is down-regulated in EBV-associated nasopharyngeal carcinoma.; J Pathol, 217: 345-52 |
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GSE13597 |
| Bosone, Camilla et al. (2024) A polarized FGF8 source specifies frontotemporal signatures in spatially oriented cell populations of cortical assembloids.; Nat Methods, 21: 2147-2159 |
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GSE175592 GSE231318 |
| Bosotti, Roberta et al. (2012) Transcriptional analysis of the Aurora inhibitor Danusertib leading to biomarker identification in TP53 wild type cells.; Gene, 494: 202-8 |
|
GSE24547 |
| Bosquez Huerta, Navish A et al. (2025) Sex-specific astrocyte regulation of spinal motor circuits by Nkx6.1.; Cell Rep, 44: 115121 |
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GSE282689 |
| Bossel Ben-Moshe, Noa et al. (2012) Context-specific microRNA analysis: identification of functional microRNAs and their mRNA targets.; Nucleic Acids Res, 40: 10614-27 |
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GSE33538 |
| Bossers, Koen et al. (2010) Intensity-based analysis of dual-color gene expression data as an alternative to ratio-based analysis to enhance reproducibility.; BMC Genomics, 11: 112 |
|
GSE12553 |
| Bossé, Yohan et al. (2009) Refining molecular pathways leading to calcific aortic valve stenosis by studying gene expression profile of normal and calcified stenotic human aortic valves.; Circ Cardiovasc Genet, 2: 489-98 |
|
GSE12644 |
| Bot, Anna Maria et al. (2013) Alterations in miRNA levels in the dentate gyrus in epileptic rats.; PLoS One, 8: e76051 |
|
GSE49849 |
| Botermann, Dominik Simon et al. (2021) Hedgehog signaling in endocrine and folliculo-stellate cells of the adult pituitary.; J Endocrinol, 248: 303-316 |
|
GSE153550 |
| Botling, Johan et al. (2013) Biomarker discovery in non-small cell lung cancer: integrating gene expression profiling, meta-analysis, and tissue microarray validation.; Clin Cancer Res, 19: 194-204 |
|
GSE37745 |
| Bott, Matthew et al. (2011) The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma.; Nat Genet, 43: 668-72 |
|
GSE29354 |
| Botta-Orfila, Teresa et al. (2012) Brain transcriptomic profiling in idiopathic and LRRK2-associated Parkinson's disease.; Brain Res, 1466: 152-7 |
|
GSE34516 |
| Botta-Orfila, Teresa et al. (2012) Microarray expression analysis in idiopathic and LRRK2-associated Parkinson's disease.; Neurobiol Dis, 45: 462-8 |
|
GSE23290 |
| Bottelbergs, Astrid et al. (2012) Peroxisome deficiency but not the defect in ether lipid synthesis causes activation of the innate immune system and axonal loss in the central nervous system.; J Neuroinflammation, 9: 61 |
|
GSE31938 |
| Bottomly, Daniel et al. (2011) Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays.; PLoS One, 6: e17820 |
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GSE26024.2 GSE26024.1 |
| Bottomly, Daniel et al. (2012) Expression quantitative trait Loci for extreme host response to influenza a in pre-collaborative cross mice.; G3 (Bethesda), 2: 213-21 |
|
GSE30506 |
| Bou-Tayeh, Berna et al. (2021) Chronic IL-15 Stimulation and Impaired mTOR Signaling and Metabolism in Natural Killer Cells During Acute Myeloid Leukemia.; Front Immunol, 12: 730970 |
|
GSE180409 |
| Boucas, Jorge et al. (2015) Label-Free Protein-RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression.; PLoS One, 10: e0125745 |
|
GSE67266 |
| Bouche, Axelle et al. (2023) In vitro-generated human muscle reserve cells are heterogeneous for Pax7 with distinct molecular states and metabolic profiles.; Stem Cell Res Ther, 14: 243 |
|
GSE233597 |
| Boucherat, Olivier et al. (2015) Epithelial inactivation of Yy1 abrogates lung branching morphogenesis.; Development, 142: 2981-95 |
|
GSE66171 |
| Bouchet, Audrey et al. (2013) Early gene expression analysis in 9L orthotopic tumor-bearing rats identifies immune modulation in molecular response to synchrotron microbeam radiation therapy.; PLoS One, 8: e81874 |
|
GSE50478 |
| Boudil, Amine et al. (2015) IL-7 coordinates proliferation, differentiation and Tcra recombination during thymocyte ?-selection.; Nat Immunol, 16: 397-405 |
|
GSE63932 |
| Boudreault, Francis et al. (2017) Zinc deficiency primes the lung for ventilator-induced injury.; JCI Insight, 2: [no pages] |
|
GSE80161 |
| Bough, Kristopher J et al. (2006) Mitochondrial biogenesis in the anticonvulsant mechanism of the ketogenic diet.; Ann Neurol, 60: 223-35 |
|
GSE1155 |
| Boukas, Leandros et al. (2023) Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice.; bioRxiv, [no vol.]: [no pages] |
|
GSE263144 |
| Boulaire, Jérôme et al. (2009) Gene expression profiling to define host response to baculoviral transduction in the brain.; J Neurochem, 109: 1203-14 |
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GSE9833 GSE9835 GSE9834 |
| Boulay, Anne-Cécile et al. (2017) Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface.; Cell Discov, 3: 17005 |
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GSE72937 GSE76299 |
| Boulay, Anne-Cécile et al. (2018) Connexin 43 Controls the Astrocyte Immunoregulatory Phenotype.; Brain Sci, 8: [no pages] |
|
GSE110721 |
| Boulay, Gaylor et al. (2024) EWS-WT1 fusion isoforms establish oncogenic programs and therapeutic vulnerabilities in desmoplastic small round cell tumors.; Nat Commun, 15: 7460 |
|
GSE212976 |
| Boulling, Arnaud et al. (2013) Identification of HMX1 target genes: a predictive promoter model approach.; Mol Vis, 19: 1779-94 |
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GSE47002 |
| Bourdeau, Véronique et al. (2008) Mechanisms of primary and secondary estrogen target gene regulation in breast cancer cells.; Nucleic Acids Res, 36: 76-93 |
|
GSE8597 |