List of all 17,702 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Blalock, Eric M et al. (2003) Gene microarrays in hippocampal aging: statistical profiling identifies novel processes correlated with cognitive impairment.; J Neurosci, 23: 3807-19 |
|
GSE854 |
| Blalock, Eric M et al. (2004) Incipient Alzheimer's disease: microarray correlation analyses reveal major transcriptional and tumor suppressor responses.; Proc Natl Acad Sci U S A, 101: 2173-8 |
|
GSE1297 |
| Blalock, Eric M et al. (2010) Effects of long-term pioglitazone treatment on peripheral and central markers of aging.; PLoS One, 5: e10405 |
|
GSE20219 |
| Blalock, Eric M et al. (2011) Microarray analyses of laser-captured hippocampus reveal distinct gray and white matter signatures associated with incipient Alzheimer's disease.; J Chem Neuroanat, [no vol.]: [no pages] |
|
GSE28146 |
| Blanchard, Alexa C et al. (2024) Mast cells proliferate in the peri-hippocampal space during early development and modulate local and peripheral immune cells.; Dev Cell, [no vol.]: [no pages] |
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GSE277694 |
| Blanchette, Marie et al. (2025) Regional heterogeneity of the blood-brain barrier.; Nat Commun, 16: 7332 |
|
GSE165457 |
| Blanchette-Farra, Nicole et al. (2018) Contribution of three-dimensional architecture and tumor-associated fibroblasts to hepcidin regulation in breast cancer.; Oncogene, 37: 4013-4032 |
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GSE109733 |
| Blanchi, Bruno et al. (2023) EndoC-βH5 cells are storable and ready-to-use human pancreatic beta cells with physiological insulin secretion.; Mol Metab, 76: 101772 |
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GSE224660 |
| Blanco, Daniel Bastardo et al. (2022) PTEN directs developmental and metabolic signaling for innate-like T cell fate and tissue homeostasis.; Nat Cell Biol, 24: 1642-1654 |
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GSE206462 GSE152294 |
| Blanco-Suarez, Elena et al. (2018) Astrocyte-Secreted Chordin-like 1 Drives Synapse Maturation and Limits Plasticity by Increasing Synaptic GluA2 AMPA Receptors.; Neuron, 100: 1116-1132.e13 |
|
GSE108483 GSE108484 |
| Blank, Bryant S et al. (2014) Misregulation of the broad-range phospholipase C activity increases the susceptibility of Listeria monocytogenes to intracellular killing by neutrophils.; Microbes Infect, 16: 104-13 |
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GSE49820 |
| Blank, Thomas et al. (2016) Brain Endothelial- and Epithelial-Specific Interferon Receptor Chain 1 Drives Virus-Induced Sickness Behavior and Cognitive Impairment.; Immunity, 44: 901-12 |
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GSE74063 GSE74061 |
| Blaskovic, Sanja et al. (2020) Gestation and lactation exposure to nicotine induces transient postnatal changes in lung alveolar development.; Am J Physiol Lung Cell Mol Physiol, 318: L606-L618 |
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GSE102239 |
| Blaskovic, Sanja et al. (2022) Early life exposure to nicotine modifies lung gene response after elastase-induced emphysema.; Respir Res, 23: 44 |
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GSE167567 GSE167568 |
| Blatner, Nichole R et al. (2012) Expression of ROR?t marks a pathogenic regulatory T cell subset in human colon cancer.; Sci Transl Med, 4: 164ra159 |
|
GSE41229 |
| Blaveri, Ekaterini et al. (2010) Expression profiling of a genetic animal model of depression reveals novel molecular pathways underlying depressive-like behaviours.; PLoS One, 5: e12596 |
|
GSE20388 |
| Blaxall, Burns C et al. (2003) Differential myocardial gene expression in the development and rescue of murine heart failure.; Physiol Genomics, 15: 105-14 |
|
GSE670 |
| Blaze, J et al. (2021) Neuronal Nsun2 deficiency produces tRNA epitranscriptomic alterations and proteomic shifts impacting synaptic signaling and behavior.; Nat Commun, 12: 4913 |
|
GSE165202 |
| Blaze, Jennifer et al. (2020) Blast-Related Mild TBI Alters Anxiety-Like Behavior and Transcriptional Signatures in the Rat Amygdala.; Front Behav Neurosci, 14: 160 |
|
GSE155393 |
| Blazquez, Raquel et al. (2022) Intralesional TLR4 agonist treatment strengthens the organ defense against colonizing cancer cells in the brain.; Oncogene, 41: 5008-5019 |
|
GSE196519 |
| Bleharski, Joshua R et al. (2003) Use of genetic profiling in leprosy to discriminate clinical forms of the disease.; Science, 301: 1527-30 |
|
GSE443 |
| Bleich, Andre et al. (2010) Cdcs1 a major colitis susceptibility locus in mice; subcongenic analysis reveals genetic complexity.; Inflamm Bowel Dis, 16: 765-75 |
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GSE15318 |
| Blencowe, Montgomery et al. (2022) Relative contributions of sex hormones, sex chromosomes, and gonads to sex differences in tissue gene regulation.; Genome Res, 32: 807-824 |
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GSE176033 |
| Blischak, John D et al. (2015) Mycobacterial infection induces a specific human innate immune response.; Sci Rep, 5: 16882 |
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GSE67427 |
| Block, Carina L et al. (2022) Prenatal environmental stressors impair postnatal microglia function and adult behavior in males.; Cell Rep, 40: 111161 |
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GSE160344 |
| Bloedjes, Timon A et al. (2020) AKT signaling restrains tumor suppressive functions of FOXO transcription factors and GSK3 kinase in multiple myeloma.; Blood Adv, 4: 4151-4164 |
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GSE120940 |
| Blohmke, Christoph J et al. (2012) Atypical activation of the unfolded protein response in cystic fibrosis airway cells contributes to p38 MAPK-mediated innate immune responses.; J Immunol, [no vol.]: [no pages] |
|
GSE35391 |
| Blomberg, K Emelie M et al. (2009) Transcriptional signatures of Itk-deficient CD3+, CD4+ and CD8+ T-cells.; BMC Genomics, 10: 233 |
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GSE12464 GSE12465 |
| Blomfield, Isabelle Maria et al. (2019) Id4 promotes the elimination of the pro-activation factor Ascl1 to maintain quiescence of adult hippocampal stem cells.; Elife, 8: [no pages] |
|
GSE116997 |
| Bloom, Chloe I et al. (2012) Detectable changes in the blood transcriptome are present after two weeks of antituberculosis therapy.; PLoS One, 7: e46191 |
|
GSE40553 |
| Bloom, Chloe I et al. (2013) Transcriptional blood signatures distinguish pulmonary tuberculosis, pulmonary sarcoidosis, pneumonias and lung cancers.; PLoS One, 8: e70630 |
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GSE42832 GSE42831 GSE42830 GSE42825 GSE42827 GSE42826 |
| Blot, Guillaume et al. (2023) Perilipin 2-positive mononuclear phagocytes accumulate in the diabetic retina and promote PPARγ-dependent vasodegeneration.; J Clin Invest, 133: [no pages] |
|
GSE239512 |
| Bludau, Anna et al. (2023) Functional involvement of septal miR-132 in extinction and oxytocin-mediated reversal of social fear.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE211449 |
| Blum, Jordan M et al. (2013) Distinct and overlapping sarcoma subtypes initiated from muscle stem and progenitor cells.; Cell Rep, 5: 933-40 |
|
GSE46836 |
| Blumenreich, Shani et al. (2020) Substrate reduction therapy using Genz-667161 reduces levels of pathogenic components in a mouse model of neuronopathic forms of Gaucher disease.; J Neurochem, [no vol.]: [no pages] |
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GSE151133 |
| Blättler, Sharon M et al. (2012) Defective mitochondrial morphology and bioenergetic function in mice lacking the transcription factor Yin Yang 1 in skeletal muscle.; Mol Cell Biol, 32: 3333-46 |
|
GSE39009 |
| Blüthgen, Nils et al. (2017) Profiling the MAPK/ERK dependent and independent activity regulated transcriptional programs in the murine hippocampus in vivo.; Sci Rep, 7: 45101 |
|
GSE88723 |
| Bo, Michele Dal et al. (2010) MDM4 (MDMX) is overexpressed in chronic lymphocytic leukaemia (CLL) and marks a subset of p53wild-type CLL with a poor cytotoxic response to Nutlin-3.; Br J Haematol, 150: 237-9 |
|
GSE18971 |
| Boato, Francesco et al. (2023) Activation of MAP2K signaling by genetic engineering or HF-rTMS promotes corticospinal axon sprouting and functional regeneration.; Sci Transl Med, 15: eabq6885 |
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GSE201350 |
| Bobowski-Gerard, Marie et al. (2022) Functional genomics uncovers the transcription factor BNC2 as required for myofibroblastic activation in fibrosis.; Nat Commun, 13: 5324 |
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GSE185527 |
| Bochkov, Y A et al. (2010) Rhinovirus-induced modulation of gene expression in bronchial epithelial cells from subjects with asthma.; Mucosal Immunol, 3: 69-80 |
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GSE13396 |
| Bochner, Ron et al. (2013) Phosphatidylserine increases IKBKAP levels in a humanized knock-in IKBKAP mouse model.; Hum Mol Genet, 22: 2785-94 |
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GSE45580 |
| Bock, Christoph et al. (2011) Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines.; Cell, 144: 439-52 |
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GSE25970 |
| Boeck, Myriam et al. (2020) Temporospatial distribution and transcriptional profile of retinal microglia in the oxygen-induced retinopathy mouse model.; Glia, [no vol.]: [no pages] |
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GSE132731 |
| Boeckmans, Joost et al. (2022) Transcriptomics Reveals Discordant Lipid Metabolism Effects between In Vitro Models Exposed to Elafibranor and Liver Samples of NAFLD Patients after Bariatric Surgery.; Cells, 11: [no pages] |
|
GSE166186 |
| Boeddrich, Annett et al. (2019) The Anti-amyloid Compound DO1 Decreases Plaque Pathology and Neuroinflammation-Related Expression Changes in 5xFAD Transgenic Mice.; Cell Chem Biol, 26: 109-120.e7 |
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GSE119756 |
| Boeddrich, Annett et al. (2023) A proteomics analysis of 5xFAD mouse brain regions reveals the lysosome-associated protein Arl8b as a candidate biomarker for Alzheimer's disease.; Genome Med, 15: 50 |
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GSE198226 |
| Boehme, Nickolas A et al. (2021) Axonopathy precedes cell death in ocular damage mediated by blast exposure.; Sci Rep, 11: 11774 |
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GSE274793 |
| Boelens, Mirjam C et al. (2009) Current smoking-specific gene expression signature in normal bronchial epithelium is enhanced in squamous cell lung cancer.; J Pathol, 218: 182-91 |
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GSE12428 |
| Boer, Karin et al. (2010) Gene expression analysis of tuberous sclerosis complex cortical tubers reveals increased expression of adhesion and inflammatory factors.; Brain Pathol, 20: 704-19 |
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GSE16969 |
| Boerma, Marjan et al. (2005) Microarray analysis of gene expression profiles of cardiac myocytes and fibroblasts after mechanical stress, ionising or ultraviolet radiation.; BMC Genomics, 6: 6 |
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GSE2032 |
| Boerma, Marjan et al. (2008) Comparative gene expression profiling in three primary human cell lines after treatment with a novel inhibitor of Rho kinase or atorvastatin.; Blood Coagul Fibrinolysis, 19: 709-18 |
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GSE8686 |
| Boersma, Brenda J et al. (2008) A stromal gene signature associated with inflammatory breast cancer.; Int J Cancer, 122: 1324-32 |
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GSE5847 |
| Boespflug, Nicholas D et al. (2014) ATF3 is a novel regulator of mouse neutrophil migration.; Blood, 123: 2084-93 |
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GSE53973 |
| Bofill-De Ros, Xavier et al. (2015) Genome-wide miR-155 and miR-802 target gene identification in the hippocampus of Ts65Dn Down syndrome mouse model by miRNA sponges.; BMC Genomics, 16: 907 |
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GSE68074 |
| Bogani, Debora et al. (2013) The PR/SET domain zinc finger protein Prdm4 regulates gene expression in embryonic stem cells but plays a nonessential role in the developing mouse embryo.; Mol Cell Biol, [no vol.]: [no pages] |
|
GSE46308 |
| Bogdanov, Patricia et al. (2014) The db/db mouse: a useful model for the study of diabetic retinal neurodegeneration.; PLoS One, 9: e97302 |
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GSE55389 |
| Bogguri, Chandrakumar et al. (2024) Biphasic response of human iPSC-derived neural network activity following exposure to a sarin-surrogate nerve agent.; Front Cell Neurosci, 18: 1378579 |
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GSE251844 |
| Bogunovic, Dusan et al. (2009) Immune profile and mitotic index of metastatic melanoma lesions enhance clinical staging in predicting patient survival.; Proc Natl Acad Sci U S A, 106: 20429-34 |
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GSE19234 |
| Bohacek, J et al. (2015) Pathological brain plasticity and cognition in the offspring of males subjected to postnatal traumatic stress.; Mol Psychiatry, 20: 621-31 |
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GSE47846 GSE47847 |
| Bohleber, Simon et al. (2022) High-Resolution Ribosome Profiling Reveals Gene-Specific Details of UGA Re-Coding in Selenoprotein Biosynthesis.; Biomolecules, 12: [no pages] |
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GSE145465 |
| Bohlen, Christopher J et al. (2017) Diverse Requirements for Microglial Survival, Specification, and Function Revealed by Defined-Medium Cultures.; Neuron, 94: 759-773.e8 |
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GSE96995 |
| Bohne, Felix et al. (2012) Intra-graft expression of genes involved in iron homeostasis predicts the development of operational tolerance in human liver transplantation.; J Clin Invest, 122: 368-82 |
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GSE28842 |
| Bohrer, Andrea C et al. (2021) Eosinophils are part of the granulocyte response in tuberculosis and promote host resistance in mice.; J Exp Med, 218: [no pages] |
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GSE165871 |
| Bohuslavova, Romana et al. (2023) NEUROD1 reinforces endocrine cell fate acquisition in pancreatic development.; Nat Commun, 14: 5554 |
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GSE212082 |
| Boi, Michela et al. (2015) The BET Bromodomain Inhibitor OTX015 Affects Pathogenetic Pathways in Preclinical B-cell Tumor Models and Synergizes with Targeted Drugs.; Clin Cancer Res, 21: 1628-38 |
|
GSE64820 |
| Boison, Detlev et al. (2022) The impact of methodology on the reproducibility and rigor of DNA methylation data.; Sci Rep, 12: 380 |
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GSE164800 |
| Boisson, Bertrand et al. (2012) Immunodeficiency, autoinflammation and amylopectinosis in humans with inherited HOIL-1 and LUBAC deficiency.; Nat Immunol, 13: 1178-86 |
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GSE40561 |
| Boisvert, Matthew M et al. (2018) The Aging Astrocyte Transcriptome from Multiple Regions of the Mouse Brain.; Cell Rep, 22: 269-285 |
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GSE99791 |
| Boivin, Gregory A et al. (2012) Mapping of clinical and expression quantitative trait loci in a sex-dependent effect of host susceptibility to mouse-adapted influenza H3N2/HK/1/68.; J Immunol, 188: 3949-60 |
|
GSE35888 |
| Boj, Sylvia F et al. (2012) Diabetes risk gene and Wnt effector Tcf7l2/TCF4 controls hepatic response to perinatal and adult metabolic demand.; Cell, 151: 1595-607 |
|
GSE41284 |
| Bokov, Roman O et al. (2025) Molecular insights into human soleus muscle atrophy development: long-term dry immersion effects on the transcriptomic profile and posttranslational signaling.; Physiol Genomics, 57: 357-382 |
|
GSE268033 |
| Boland, Brandon B et al. (2022) Peptide-YY3-36/glucagon-like peptide-1 combination treatment of obese diabetic mice improves insulin sensitivity associated with recovered pancreatic β-cell function and synergistic activation of discrete hypothalamic and brainstem neuronal circuitries.; Mol Metab, 55: 101392 |
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GSE160802 |
| Bolcun-Filas, Ewelina et al. (2011) A-MYB (MYBL1) transcription factor is a master regulator of male meiosis.; Development, 138: 3319-30 |
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GSE28025 |
| Boldanova, Tujana et al. (2017) Transcriptional response to hepatitis C virus infection and interferon-alpha treatment in the human liver.; EMBO Mol Med, 9: 816-834 |
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GSE84346 |
| Bolden, J E et al. (2013) HDAC inhibitors induce tumor-cell-selective pro-apoptotic transcriptional responses.; Cell Death Dis, 4: e519 |
|
GSE43010 |
| Bolea, Irene et al. (2019) Defined neuronal populations drive fatal phenotype in a mouse model of Leigh syndrome.; Elife, 8: [no pages] |
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GSE125470 |
| Bolen, Christopher R et al. (2013) Dynamic expression profiling of Type I and Type III Interferon-stimulated hepatocytes reveals a stable hierarchy of gene expression.; Hepatology, [no vol.]: [no pages] |
|
GSE48400 |
| Bolen, Christopher R et al. (2013) The blood transcriptional signature of chronic hepatitis C virus is consistent with an ongoing interferon-mediated antiviral response.; J Interferon Cytokine Res, [no vol.]: [no pages] |
|
GSE40184 |
| Boles, Nathan C et al. (2014) NPTX1 regulates neural lineage specification from human pluripotent stem cells.; Cell Rep, 6: 724-36 |
|
GSE34551 |
| Boll, K et al. (2013) MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma.; Oncogene, 32: 277-85 |
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GSE17315 GSE22979 |
| Bollig-Fischer, Aliccia et al. (2010) HER-2 signaling, acquisition of growth factor independence, and regulation of biological networks associated with cell transformation.; Cancer Res, 70: 7862-73 |
|
GSE23135 |
| Bollinger, Eliza et al. (2025) Restoration of branched chain amino acid catabolism improves kidney function in preclinical cardiovascular-kidney-metabolic syndrome models.; Kidney Int, [no vol.]: [no pages] |
|
GSE263155 |
| Bolognani, Federico et al. (2010) Novel recognition motifs and biological functions of the RNA-binding protein HuD revealed by genome-wide identification of its targets.; Nucleic Acids Res, 38: 117-30 |
|
GSE11333 |
| Bolotin, Eugene et al. (2010) Integrated approach for the identification of human hepatocyte nuclear factor 4alpha target genes using protein binding microarrays.; Hepatology, 51: 642-53 |
|
GSE29084 |
| Bolotin, Eugene et al. (2013) Statin induced changes in gene expression in EBV-transformed and native B-cells.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE51444 |
| Bolte, Ashley C et al. (2020) Meningeal lymphatic dysfunction exacerbates traumatic brain injury pathogenesis.; Nat Commun, 11: 4524 |
|
GSE155063 |
| Böiers, Charlotta et al. (2013) Lymphomyeloid contribution of an immune-restricted progenitor emerging prior to definitive hematopoietic stem cells.; Cell Stem Cell, 13: 535-48 |
|
GSE50896 |