List of all 16,742 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Bourdeau, Véronique et al. (2008) Mechanisms of primary and secondary estrogen target gene regulation in breast cancer cells.; Nucleic Acids Res, 36: 76-93 |
|
GSE8597 |
| Bourdeaut, Franck et al. (2009) Cholinergic switch associated with morphological differentiation in neuroblastoma.; J Pathol, 219: 463-72 |
|
GSE14880 |
| Bourner, Luke A et al. (2022) AhR promotes phosphorylation of ARNT isoform 1 in human T cell malignancies as a switch for optimal AhR activity.; Proc Natl Acad Sci U S A, 119: e2114336119 |
|
GSE184151.2 GSE184151.1 |
| Bourque, Kyla et al. (2023) Comparing the signaling and transcriptome profiling landscapes of human iPSC-derived and primary rat neonatal cardiomyocytes.; Sci Rep, 13: 12248 |
|
GSE225707.1 GSE225707.2 |
| Bourquin, Jean-Pierre et al. (2006) Identification of distinct molecular phenotypes in acute megakaryoblastic leukemia by gene expression profiling.; Proc Natl Acad Sci U S A, 103: 3339-44 |
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GSE83449 GSE4119 |
| Bouschet, Tristan et al. [Unknown date]In Vitro Corticogenesis from Embryonic Stem Cells Recapitulates the In Vivo Epigenetic Control of Imprinted Gene Expression.; Cereb Cortex, 27: 2418-2433 |
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GSE58523 |
| Bousman, Chad A et al. (2010) Preliminary evidence of ubiquitin proteasome system dysregulation in schizophrenia and bipolar disorder: convergent pathway analysis findings from two independent samples.; Am J Med Genet B Neuropsychiatr Genet, 153B: 494-502 |
|
GSE18312 |
| Boussouar, F et al. (2014) A specific CBP/p300-dependent gene expression programme drives the metabolic remodelling in late stages of spermatogenesis.; Andrology, 2: 351-9 |
|
GSE55767 |
| Boutaoui, Nadia et al. (2019) Epigenome-wide effects of vitamin D on asthma bronchial epithelial cells.; Epigenetics, 14: 844-849 |
|
GSE106885 |
| Boutej, Hejer et al. (2017) Diverging mRNA and Protein Networks in Activated Microglia Reveal SRSF3 Suppresses Translation of Highly Upregulated Innate Immune Transcripts.; Cell Rep, 21: 3220-3233 |
|
GSE107034 |
| Boutros, Paul C et al. (2011) mRNA levels in control rat liver display strain-specific, hereditary, and AHR-dependent components.; PLoS One, 6: e18337 |
|
GSE10448 |
| Boutz, Paul L et al. (2015) Detained introns are a novel, widespread class of post-transcriptionally spliced introns.; Genes Dev, 29: 63-80 |
|
GSE57231 |
| Bovee, Corinne E et al. (2024) Perilipin 5 Phosphorylation is Dispensable for Upregulation of Hepatic Lipid Metabolism Genes upon Fasting but Required for Insulin Receptor Substrate 2 Expression in Male Mice.; bioRxiv, [no vol.]: [no pages] |
|
GSE275608 |
| Bovio, Patrick Piero et al. (2019) Differential Methylation of H3K79 Reveals DOT1L Target Genes and Function in the Cerebellum In Vivo.; Mol Neurobiol, 56: 4273-4287 |
|
GSE101945 |
| Bowden, Nikola A et al. (2013) Regulators of global genome repair do not respond to DNA damaging therapy but correlate with survival in melanoma.; PLoS One, 8: e70424 |
|
GSE47980 |
| Bowen, Charles M et al. (2023) Naproxen chemoprevention induces proliferation of cytotoxic lymphocytes in Lynch Syndrome colorectal mucosa.; Front Immunol, 14: 1162669 |
|
GSE144381.2 GSE144381.1 |
| Bowen, Joanne M et al. (2007) Gene expression analysis of multiple gastrointestinal regions reveals activation of common cell regulatory pathways following cytotoxic chemotherapy.; Int J Cancer, 121: 1847-56 |
|
GSE11722 |
| Bowen, Margot E et al. (2019) The Spatiotemporal Pattern and Intensity of p53 Activation Dictates Phenotypic Diversity in p53-Driven Developmental Syndromes.; Dev Cell, 50: 212-228.e6 |
|
GSE128191 GSE111753 |
| Bowen, Nathan J et al. (2009) Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells.; BMC Med Genomics, 2: 71 |
|
GSE14407 |
| Bowler, Russell P et al. (2002) A catalytic antioxidant (AEOL 10150) attenuates expression of inflammatory genes in stroke.; Free Radic Biol Med, 33: 1141-52 |
|
GSE63 |
| Bowles, Kathryn R et al. (2021) ELAVL4, splicing, and glutamatergic dysfunction precede neuron loss in MAPT mutation cerebral organoids.; Cell, 184: 4547-4563.e17 |
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GSE171343 |
| Bowles, Kathryn R et al. (2024) Development of MAPT S305 mutation human iPSC lines exhibiting elevated 4R tau expression and functional alterations in neurons and astrocytes.; Cell Rep, 43: 115013 |
|
GSE260517 |
| Bowman, Robert L et al. (2016) Macrophage Ontogeny Underlies Differences in Tumor-Specific Education in Brain Malignancies.; Cell Rep, 17: 2445-2459 |
|
GSE86573 |
| Bowyer, John F et al. (2015) Evaluating the Stability of RNA-Seq Transcriptome Profiles and Drug-Induced Immune-Related Expression Changes in Whole Blood.; PLoS One, 10: e0133315 |
|
GSE64778 |
| Boxer, Lisa D et al. [Unknown date]MeCP2 Represses the Rate of Transcriptional Initiation of Highly Methylated Long Genes.; Mol Cell, 77: 294-309.e9 |
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GSE128178 GSE139508 |
| Boyd, Penelope J et al. [Unknown date]Bioenergetic status modulates motor neuron vulnerability and pathogenesis in a zebrafish model of spinal muscular atrophy.; PLoS Genet, 13: e1006744 |
|
GSE86908 |
| Boyd, Rachel J et al. (2023) Evaluating the mouse neural precursor line, SN4741, as a suitable proxy for midbrain dopaminergic neurons.; Res Sq, [no vol.]: [no pages] |
|
GSE225071 |
| Boyer, Justin G et al. (2022) Depletion of skeletal muscle satellite cells attenuates pathology in muscular dystrophy.; Nat Commun, 13: 2940 |
|
GSE168703 |
| Boyle, Jay O et al. (2010) Effects of cigarette smoke on the human oral mucosal transcriptome.; Cancer Prev Res (Phila), 3: 266-78 |
|
GSE17913 |
| Bozdag, Deniz et al. (2024) Dysregulation of adipogenesis and disrupted lipid metabolism by the antidepressants citalopram and sertraline.; Toxicol Appl Pharmacol, 486: 116937 |
|
GSE242103 |
| Bozek, Katarzyna et al. (2014) Exceptional evolutionary divergence of human muscle and brain metabolomes parallels human cognitive and physical uniqueness.; PLoS Biol, 12: e1001871 |
|
GSE49379.1 GSE49379.3 |
| Bozulic, Lana et al. (2008) PKBalpha/Akt1 acts downstream of DNA-PK in the DNA double-strand break response and promotes survival.; Mol Cell, 30: 203-13 |
|
GSE9146 |
| Braakhuis, B J M et al. (2013) Expression signature in peripheral blood cells for molecular diagnosis of head and neck squamous cell carcinoma.; Oral Dis, 19: 452-5 |
|
GSE39400 |
| Brachmann, Saskia M et al. (2012) Characterization of the mechanism of action of the pan class I PI3K inhibitor NVP-BKM120 across a broad range of concentrations.; Mol Cancer Ther, 11: 1747-57 |
|
GSE33643 |
| Bracko, Oliver et al. (2012) Gene expression profiling of neural stem cells and their neuronal progeny reveals IGF2 as a regulator of adult hippocampal neurogenesis.; J Neurosci, 32: 3376-87 |
|
GSE21208 |
| Bradesi, Sylvie et al. (2015) Identification of Spinal Cord MicroRNA and Gene Signatures in a Model of Chronic Stress-Induced Visceral Hyperalgesia in Rat.; PLoS One, 10: e0130938 |
|
GSE67830 |
| Bradford, Blair U et al. (2011) Interstrain differences in the liver effects of trichloroethylene in a multistrain panel of inbred mice.; Toxicol Sci, 120: 206-17 |
|
GSE24278 |
| Bradley, Robert A et al. (2019) Regionally specified human pluripotent stem cell-derived astrocytes exhibit different molecular signatures and functional properties.; Development, 146: [no pages] |
|
GSE133489 |
| Bradner, James E et al. (2010) Chemical genetic strategy identifies histone deacetylase 1 (HDAC1) and HDAC2 as therapeutic targets in sickle cell disease.; Proc Natl Acad Sci U S A, 107: 12617-22 |
|
GSE22366 |
| Brady, Colleen A et al. (2011) Distinct p53 transcriptional programs dictate acute DNA-damage responses and tumor suppression.; Cell, 145: 571-83 |
|
GSE27901 |
| Brady, Jennifer J et al. (2013) Early role for IL-6 signalling during generation of induced pluripotent stem cells revealed by heterokaryon RNA-Seq.; Nat Cell Biol, 15: 1244-52 |
|
GSE46104 |
| Brady, Rebecca A et al. (2015) RNA-Seq Analysis of the Host Response to Staphylococcus aureus Skin and Soft Tissue Infection in a Mouse Model.; PLoS One, 10: e0124877 |
|
GSE56227 |
| Bramall, Alexa N et al. (2013) Endothelin-2-mediated protection of mutant photoreceptors in inherited photoreceptor degeneration.; PLoS One, 8: e58023 |
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GSE38797 |
| Bramel, Emily E et al. (2022) Postnatal Smad3 Inactivation in Murine Smooth Muscle Cells Elicits a Temporally and Regionally Distinct Transcriptional Response.; Front Cardiovasc Med, 9: 826495 |
|
GSE189544 |
| Brami-Cherrier, Karen et al. (2020) Cocaine-mediated circadian reprogramming in the striatum through dopamine D2R and PPARγ activation.; Nat Commun, 11: 4448 |
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GSE142657 |
| Bramswig, Nuria C et al. (2013) Epigenomic plasticity enables human pancreatic ? to ? cell reprogramming.; J Clin Invest, 123: 1275-84 |
|
GSE50386 |
| Brand, Carolin et al. (2023) Kunjin Virus, Zika Virus, and Yellow Fever Virus Infections Have Distinct Effects on the Coding Transcriptome and Proteome of Brain-Derived U87 Cells.; Viruses, 15: [no pages] |
|
GSE232504 |
| Brandao, Wesley et al. (2025) Inhaled xenon modulates microglia and ameliorates disease in mouse models of amyloidosis and tauopathy.; Sci Transl Med, 17: eadk3690 |
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GSE269481 GSE271471 GSE271472 GSE272686 GSE273575 GSE272684 GSE273541 GSE272910 |
| Brandenburg, Cheryl et al. (2022) Transcriptomic analysis of isolated and pooled human postmortem cerebellar Purkinje cells in autism spectrum disorders.; Front Genet, 13: 944837 |
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GSE211154 |
| Branigan, Gregory L et al. (2023) Breast cancer therapies reduce risk of Alzheimer's disease and promote estrogenic pathways and action in brain.; iScience, 26: 108316 |
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GSE241054 |
| Brannian, John et al. (2009) Progressive obesity leads to altered ovarian gene expression in the Lethal Yellow mouse: a microarray study.; J Ovarian Res, 2: 10 |
|
GSE14937 |
| Brannon, A Rose et al. (2010) Molecular Stratification of Clear Cell Renal Cell Carcinoma by Consensus Clustering Reveals Distinct Subtypes and Survival Patterns.; Genes Cancer, 1: 152-163 |
|
GSE16449 |
| Brase, Jan C et al. (2011) TMPRSS2-ERG -specific transcriptional modulation is associated with prostate cancer biomarkers and TGF-? signaling.; BMC Cancer, 11: 507 |
|
GSE29079 |
| Brattås, Per Ludvik et al. (2017) TRIM28 Controls a Gene Regulatory Network Based on Endogenous Retroviruses in Human Neural Progenitor Cells.; Cell Rep, 18: 1-11 |
|
GSE84259 |
| Braun, David A et al. (2013) Cytokine response is determined by duration of receptor and signal transducers and activators of transcription 3 (STAT3) activation.; J Biol Chem, 288: 2986-93 |
|
GSE45466 |
| Braun, David J et al. (2023) Early chronic suppression of microglial p38α in a model of Alzheimer's disease does not significantly alter amyloid-associated neuropathology.; PLoS One, 18: e0286495 |
|
GSE222257 |
| Braun, Laurence et al. (2019) The Toxoplasma effector TEEGR promotes parasite persistence by modulating NF-κB signalling via EZH2.; Nat Microbiol, 4: 1208-1220 |
|
GSE113658.2 |
| Braun, Simon M G et al. (2021) BAF subunit switching regulates chromatin accessibility to control cell cycle exit in the developing mammalian cortex.; Genes Dev, 35: 335-353 |
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GSE164990 |
| Braun, Theodore P et al. (2011) Central nervous system inflammation induces muscle atrophy via activation of the hypothalamic-pituitary-adrenal axis.; J Exp Med, 208: 2449-63 |
|
GSE26766 |
| Braunstein, Marsela et al. (2016) Downregulation of histone H2A and H2B pathways is associated with anthracycline sensitivity in breast cancer.; Breast Cancer Res, 18: 16 |
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GSE54326 |
| Bravo, Celeste Parra et al. (2023) Human iPSC 4R tauopathy model uncovers modifiers of tau propagation.; bioRxiv, [no vol.]: [no pages] |
|
GSE255902 |
| Bravo-Hernandez, Mariana et al. (2020) Spinal subpial delivery of AAV9 enables widespread gene silencing and blocks motoneuron degeneration in ALS.; Nat Med, 26: 118-130 |
|
GSE135539 |
| Bray, Eric R et al. [Unknown date]Thrombospondin-1 Mediates Axon Regeneration in Retinal Ganglion Cells.; Neuron, 103: 642-657.e7 |
|
GSE115661 |
| Bray, Molly S et al. (2008) Disruption of the circadian clock within the cardiomyocyte influences myocardial contractile function, metabolism, and gene expression.; Am J Physiol Heart Circ Physiol, 294: H1036-47 |
|
GSE10045 |
| Bredel, Markus et al. (2005) Functional network analysis reveals extended gliomagenesis pathway maps and three novel MYC-interacting genes in human gliomas.; Cancer Res, 65: 8679-89 |
|
GSE2223 |
| Bredemeyer, Andrea L et al. (2008) DNA double-strand breaks activate a multi-functional genetic program in developing lymphocytes.; Nature, 456: 819-23 |
|
GSE9024 |
| Breen, M S et al. (2016) Candidate gene networks and blood biomarkers of methamphetamine-associated psychosis: an integrative RNA-sequencing report.; Transl Psychiatry, 6: e802 |
|
GSE74737 |
| Breen, Michael S et al. (2018) Gene expression in cord blood links genetic risk for neurodevelopmental disorders with maternal psychological distress and adverse childhood outcomes.; Brain Behav Immun, 73: 320-330 |
|
GSE114852 |
| Breen, Michael S et al. (2020) Episignatures Stratifying Helsmoortel-Van Der Aa Syndrome Show Modest Correlation with Phenotype.; Am J Hum Genet, 107: 555-563 |
|
GSE152421 |
| Breen, Michael S et al. (2020) Transcriptional signatures of participant-derived neural progenitor cells and neurons implicate altered Wnt signaling in Phelan-McDermid syndrome and autism.; Mol Autism, 11: 53 |
|
GSE150429 |
| Breen, Michael S et al. (2023) Large 22q13.3 deletions perturb peripheral transcriptomic and metabolomic profiles in Phelan-McDermid syndrome.; HGG Adv, 4: 100145 |
|
GSE212096 |
| Breen, Michael S et al. (2024) Convergent molecular signatures across eating disorders and obsessive-compulsive disorder in the human brain.; medRxiv, [no vol.]: [no pages] |
|
GSE262138 |
| Breitfeld, J et al. (2016) Proliferation rates and gene expression profiles in human lymphoblastoid cell lines from patients with depression characterized in response to antidepressant drug therapy.; Transl Psychiatry, 6: e950 |
|
GSE83386 |
| Breitmeyer, Ricarda et al. (2023) Regulation of synaptic connectivity in schizophrenia spectrum by mutual neuron-microglia interaction.; Commun Biol, 6: 472 |
|
GSE213232 |
| Brena, S F et al. (1991) The needle and the brain: psychophysiological factors involved in nerve blocking for chronic pain.; Clin J Pain, 7: 245-7; discussion 248-51 |
|
GSE28467 |
| Brendza, Robert et al. (2021) Genetic ablation of Gpnmb does not alter synuclein-related pathology.; Neurobiol Dis, 159: 105494 |
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GSE163559 GSE163727 |
| Brennan, Christopher M et al. (2022) DUX4 expression activates JNK and p38 MAP kinases in myoblasts.; Dis Model Mech, 15: [no pages] |
|
GSE205421 |
| Brennand, K et al. (2015) Phenotypic differences in hiPSC NPCs derived from patients with schizophrenia.; Mol Psychiatry, 20: 361-8 |
|
GSE40102 |
| Brennand, Kristen J et al. (2011) Modelling schizophrenia using human induced pluripotent stem cells.; Nature, [no vol.]: [no pages] |
|
GSE25673 |
| Brennen, W Nathaniel et al. (2021) Resistance to androgen receptor signaling inhibition does not necessitate development of neuroendocrine prostate cancer.; JCI Insight, 6: [no pages] |
|
GSE160393 |
| Brenner, Eric et al. (2020) Single cell transcriptome profiling of the human alcohol-dependent brain.; Hum Mol Genet, 29: 1144-1153 |
|
GSE141552 |
| Bresciani, Erica et al. (2021) Redundant mechanisms driven independently by RUNX1 and GATA2 for hematopoietic development.; Blood Adv, 5: 4949-4962 |
|
GSE158100 |
| Breslin, Gavin et al. (2013) Perceived control over physical and mental well-being: the effects of gender, age and social class.; J Health Psychol, [no vol.]: [no pages] |
|
GSE21565 |
| Breßer, Mona et al. (2025) Macrophage-induced enteric neurodegeneration leads to motility impairment during gut inflammation.; EMBO Mol Med, 17: 301-335 |
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GSE263125.2 GSE263125.1 |