List of all 20,326 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Boi, Michela et al. (2015) The BET Bromodomain Inhibitor OTX015 Affects Pathogenetic Pathways in Preclinical B-cell Tumor Models and Synergizes with Targeted Drugs.; Clin Cancer Res, 21: 1628-38 |
|
GSE64820 |
| Boison, Detlev et al. (2022) The impact of methodology on the reproducibility and rigor of DNA methylation data.; Sci Rep, 12: 380 |
|
GSE164800 |
| Boisson, Bertrand et al. (2012) Immunodeficiency, autoinflammation and amylopectinosis in humans with inherited HOIL-1 and LUBAC deficiency.; Nat Immunol, 13: 1178-86 |
|
GSE40561 |
| Boisvert, Matthew M et al. (2018) The Aging Astrocyte Transcriptome from Multiple Regions of the Mouse Brain.; Cell Rep, 22: 269-285 |
|
GSE99791 |
| Boivin, Gregory A et al. (2012) Mapping of clinical and expression quantitative trait loci in a sex-dependent effect of host susceptibility to mouse-adapted influenza H3N2/HK/1/68.; J Immunol, 188: 3949-60 |
|
GSE35888 |
| Boj, Sylvia F et al. (2012) Diabetes risk gene and Wnt effector Tcf7l2/TCF4 controls hepatic response to perinatal and adult metabolic demand.; Cell, 151: 1595-607 |
|
GSE41284 |
| Bokobza, Cindy et al. (2025) A systematic scoring system to optimise the testing of neurotherapeutics in models of perinatal brain injury, with an applied case study of human umbilical-cord MSC.; J Neuroinflammation, 23: 3 |
|
GSE298271 |
| Bokov, Roman O et al. (2025) Molecular insights into human soleus muscle atrophy development: long-term dry immersion effects on the transcriptomic profile and posttranslational signaling.; Physiol Genomics, 57: 357-382 |
|
GSE268033 |
| Boland, Brandon B et al. (2022) Peptide-YY3-36/glucagon-like peptide-1 combination treatment of obese diabetic mice improves insulin sensitivity associated with recovered pancreatic β-cell function and synergistic activation of discrete hypothalamic and brainstem neuronal circuitries.; Mol Metab, 55: 101392 |
|
GSE160802 |
| Bolcun-Filas, Ewelina et al. (2011) A-MYB (MYBL1) transcription factor is a master regulator of male meiosis.; Development, 138: 3319-30 |
|
GSE28025 |
| Boldanova, Tujana et al. (2017) Transcriptional response to hepatitis C virus infection and interferon-alpha treatment in the human liver.; EMBO Mol Med, 9: 816-834 |
|
GSE84346 |
| Bolden, J E et al. (2013) HDAC inhibitors induce tumor-cell-selective pro-apoptotic transcriptional responses.; Cell Death Dis, 4: e519 |
|
GSE43010 |
| Bolea, Irene et al. (2019) Defined neuronal populations drive fatal phenotype in a mouse model of Leigh syndrome.; Elife, 8: [no pages] |
|
GSE125470 |
| Bolen, Christopher R et al. (2013) Dynamic expression profiling of Type I and Type III Interferon-stimulated hepatocytes reveals a stable hierarchy of gene expression.; Hepatology, [no vol.]: [no pages] |
|
GSE48400 |
| Bolen, Christopher R et al. (2013) The blood transcriptional signature of chronic hepatitis C virus is consistent with an ongoing interferon-mediated antiviral response.; J Interferon Cytokine Res, [no vol.]: [no pages] |
|
GSE40184 |
| Boles, Nathan C et al. (2014) NPTX1 regulates neural lineage specification from human pluripotent stem cells.; Cell Rep, 6: 724-36 |
|
GSE34551 |
| Boll, K et al. (2013) MiR-130a, miR-203 and miR-205 jointly repress key oncogenic pathways and are downregulated in prostate carcinoma.; Oncogene, 32: 277-85 |
|
GSE22979 GSE17315 |
| Bollig-Fischer, Aliccia et al. (2010) HER-2 signaling, acquisition of growth factor independence, and regulation of biological networks associated with cell transformation.; Cancer Res, 70: 7862-73 |
|
GSE23135 |
| Bollinger, Eliza et al. (2025) Restoration of branched chain amino acid catabolism improves kidney function in preclinical cardiovascular-kidney-metabolic syndrome models.; Kidney Int, [no vol.]: [no pages] |
|
GSE263155 |
| Bolognani, Federico et al. (2010) Novel recognition motifs and biological functions of the RNA-binding protein HuD revealed by genome-wide identification of its targets.; Nucleic Acids Res, 38: 117-30 |
|
GSE11333 |
| Bolotin, Eugene et al. (2010) Integrated approach for the identification of human hepatocyte nuclear factor 4alpha target genes using protein binding microarrays.; Hepatology, 51: 642-53 |
|
GSE29084 |
| Bolotin, Eugene et al. (2013) Statin induced changes in gene expression in EBV-transformed and native B-cells.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE51444 |
| Bolte, Ashley C et al. (2020) Meningeal lymphatic dysfunction exacerbates traumatic brain injury pathogenesis.; Nat Commun, 11: 4524 |
|
GSE155063 |
| Bolte, Ashley C et al. (2023) The meningeal transcriptional response to traumatic brain injury and aging.; Elife, 12: [no pages] |
|
GSE206932 |
| Bolton, Jessica L et al. (2020) Unexpected Transcriptional Programs Contribute to Hippocampal Memory Deficits and Neuronal Stunting after Early-Life Adversity.; Cell Rep, 33: 108511 |
|
GSE161498 |
| Bomben, Riccardo et al. (2010) Expression of mutated IGHV3-23 genes in chronic lymphocytic leukemia identifies a disease subset with peculiar clinical and biological features.; Clin Cancer Res, 16: 620-8 |
|
GSE16065 |
| Bomer, Nils et al. (2016) Aberrant Calreticulin Expression in Articular Cartilage of Dio2 Deficient Mice.; PLoS One, 11: e0154999 |
|
GSE79239 |
| Bonanomi, Dario et al. (2019) p190RhoGAP Filters Competing Signals to Resolve Axon Guidance Conflicts.; Neuron, 102: 602-620.e9 |
|
GSE126534 |
| Bonasera, Stephen J et al. (2016) Age-related changes in cerebellar and hypothalamic function accompany non-microglial immune gene expression, altered synapse organization, and excitatory amino acid neurotransmission deficits.; Aging (Albany NY), 8: 2153-2181 |
|
GSE87102 |
| Bonaventure, Boris et al. (2022) The DEAD box RNA helicase DDX42 is an intrinsic inhibitor of positive-strand RNA viruses.; EMBO Rep, 23: e54061 |
|
GSE207288 |
| Bonazzi, Vanessa F et al. (2009) Identification of candidate tumor suppressor genes inactivated by promoter methylation in melanoma.; Genes Chromosomes Cancer, 48: 10-21 |
|
GSE32492 |
| Bondulich, Marie K et al. (2017) Myostatin inhibition prevents skeletal muscle pathophysiology in Huntington's disease mice.; Sci Rep, 7: 14275 |
|
GSE81367 |
| Bonetti, Lynn et al. (2024) A Th17 cell-intrinsic glutathione/mitochondrial-IL-22 axis protects against intestinal inflammation.; Cell Metab, 36: 1726-1744.e10 |
|
GSE248348 |
| Bonev, Boyan et al. (2017) Multiscale 3D Genome Rewiring during Mouse Neural Development.; Cell, 171: 557-572.e24 |
|
GSE96107 |
| Boneva, Stefaniya Konstantinova et al. (2020) Transcriptional Profiling Uncovers Human Hyalocytes as a Unique Innate Immune Cell Population.; Front Immunol, 11: 567274 |
|
GSE147657 |
| Boneva, Stefaniya Konstantinova et al. (2021) In-Depth Molecular Characterization of Neovascular Membranes Suggests a Role for Hyalocyte-to-Myofibroblast Transdifferentiation in Proliferative Diabetic Retinopathy.; Front Immunol, 12: 757607 |
|
GSE179568 |
| Bonfanti, Paola et al. (2010) Microenvironmental reprogramming of thymic epithelial cells to skin multipotent stem cells.; Nature, 466: 978-82 |
|
GSE21686 |
| Bonnefoi, Hervé et al. (2007) Validation of gene signatures that predict the response of breast cancer to neoadjuvant chemotherapy: a substudy of the EORTC 10994/BIG 00-01 clinical trial.; Lancet Oncol, 8: 1071-8 |
|
GSE6861 |
| Bonnefont, Jerome et al. (2019) Cortical Neurogenesis Requires Bcl6-Mediated Transcriptional Repression of Multiple Self-Renewal-Promoting Extrinsic Pathways.; Neuron, 103: 1096-1108.e4 |
|
GSE133031 |
| Bonney, Stephanie et al. (2013) Cardiac Per2 functions as novel link between fatty acid metabolism and myocardial inflammation during ischemia and reperfusion injury of the heart.; PLoS One, 8: e71493 |
|
GSE45818 |
| Bonome, Tomas et al. (2008) A gene signature predicting for survival in suboptimally debulked patients with ovarian cancer.; Cancer Res, 68: 5478-86 |
|
GSE26712 |
| Bonow, R H et al. (2009) The brain expression of genes involved in inflammatory response, the ribosome, and learning and memory is altered by centrally injected lipopolysaccharide in mice.; Pharmacogenomics J, [no vol.]: [no pages] |
|
GSE12284 |
| Bonthuis, Paul J et al. (2015) Noncanonical Genomic Imprinting Effects in Offspring.; Cell Rep, 12: 979-91 |
|
GSE70484 |
| Bonzheim, Irina et al. (2013) Identification of C/EBP? target genes in ALK+ anaplastic large cell lymphoma (ALCL) by gene expression profiling and chromatin immunoprecipitation.; PLoS One, 8: e64544 |
|
GSE23368 |
| Bonzo, Jessica A et al. (2012) Suppression of hepatocyte proliferation by hepatocyte nuclear factor 4? in adult mice.; J Biol Chem, 287: 7345-56 |
|
GSE34581 |
| Boobalan, Elangovan et al. (2022) Zfp503/Nlz2 Is Required for RPE Differentiation and Optic Fissure Closure.; Invest Ophthalmol Vis Sci, 63: 5 |
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GSE180641 |
| Booher, Winona C et al. (2022) Hippocampal RNA sequencing in mice selectively bred for high and low activity.; Genes Brain Behav, [no vol.]: e12832 |
|
GSE200043 |
| Booms, Alix et al. (2024) Parkinson's disease risk enhancers in microglia.; iScience, 27: 108921 |
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GSE245523 |
| Boon, Adrianus C M et al. (2009) Host genetic variation affects resistance to infection with a highly pathogenic H5N1 influenza A virus in mice.; J Virol, 83: 10417-26 |
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GSE64750 |
| Boon, Ruben et al. (2020) Amino acid levels determine metabolism and CYP450 function of hepatocytes and hepatoma cell lines.; Nat Commun, 11: 1393 |
|
GSE121905 |
| Boone, Deborah R et al. (2017) Effects of AAV-mediated knockdown of nNOS and GPx-1 gene expression in rat hippocampus after traumatic brain injury.; PLoS One, 12: e0185943 |
|
GSE92363 |
| Boone, Nathalie et al. (2012) Genome-wide analysis of familial dysautonomia and kinetin target genes with patient olfactory ecto-mesenchymal stem cells.; Hum Mutat, 33: 530-40 |
|
GSE27915 |
| Boonyaratanakornkit, Jim B et al. (2009) The C proteins of human parainfluenza virus type 1 (HPIV1) control the transcription of a broad array of cellular genes that would otherwise respond to HPIV1 infection.; J Virol, 83: 1892-910 |
|
GSE12664 |
| Boot, James et al. (2022) Global hypo-methylation in a proportion of glioblastoma enriched for an astrocytic signature is associated with increased invasion and altered immune landscape.; Elife, 11: [no pages] |
|
GSE196418 |
| Booth, Heather D E et al. (2019) RNA sequencing reveals MMP2 and TGFB1 downregulation in LRRK2 G2019S Parkinson's iPSC-derived astrocytes.; Neurobiol Dis, 129: 56-66 |
|
GSE120306 |
| Booth, Stephanie et al. (2004) Identification of central nervous system genes involved in the host response to the scrapie agent during preclinical and clinical infection.; J Gen Virol, 85: 3459-71 |
|
GSE1840 |
| Bootsma, Hester J et al. (2007) Analysis of the in vitro transcriptional response of human pharyngeal epithelial cells to adherent Streptococcus pneumoniae: evidence for a distinct response to encapsulated strains.; Infect Immun, 75: 5489-99 |
|
GSE8527 |
| Borbely, Gabor et al. (2015) Induction of USP17 by combining BET and HDAC inhibitors in breast cancer cells.; Oncotarget, 6: 33623-35 |
|
GSE65495 |
| Borcherding, Nicholas et al. (2015) Paracrine WNT5A Signaling Inhibits Expansion of Tumor-Initiating Cells.; Cancer Res, 75: 1972-82 |
|
GSE64487 |
| Borczuk, Alain C et al. (2011) Progression of human bronchioloalveolar carcinoma to invasive adenocarcinoma is modeled in a transgenic mouse model of K-ras-induced lung cancer by loss of the TGF-? type II receptor.; Cancer Res, 71: 6665-75 |
|
GSE27716 |
| Borders, A S et al. (2007) Macrophage-mediated neuroprotection and neurogenesis in the olfactory epithelium.; Physiol Genomics, 31: 531-43 |
|
GSE6540 |
| Bordignon, Pino et al. (2019) Dualism of FGF and TGF-β Signaling in Heterogeneous Cancer-Associated Fibroblast Activation with ETV1 as a Critical Determinant.; Cell Rep, 28: 2358-2372.e6 |
|
GSE122371 |
| Bordin, Diana L et al. (2024) Loss of alkyladenine DNA glycosylase alters gene expression in the developing mouse brain and leads to reduced anxiety and improved memory.; DNA Repair (Amst), 135: 103632 |
|
GSE243469 |
| Bordin, Diana L et al. (2025) SMUG1 DNA glycosylase modulates reward behaviour through regulation of olfactory receptor gene expression.; Nucleic Acids Res, 53: [no pages] |
|
GSE274703 |
| Bordon, Alain et al. (2008) Enforced expression of the transcriptional coactivator OBF1 impairs B cell differentiation at the earliest stage of development.; PLoS One, 3: e4007 |
|
GSE12421 |
| Borel, Valerie et al. (2022) Disrupted control of origin activation compromises genome integrity upon destabilization of Polε and dysfunction of the TRP53-CDKN1A/P21 axis.; Cell Rep, 39: 110871 |
|
GSE200475 |
| Boreland, Andrew J et al. (2025) Ethanol induces neuroimmune dysregulation and soluble TREM2 generation in a human iPSC neuron, astrocyte, microglia triculture model.; Alcohol, [no vol.]: [no pages] |
|
GSE303551 |
| Borenshtein, Diana et al. (2008) Diarrhea as a cause of mortality in a mouse model of infectious colitis.; Genome Biol, 9: R122 |
|
GSE8025 |
| Borets, Lyudmila et al. (2026) Preclinical Characterization of Vindeburnol: Pharmacokinetics, Safety, and Cognitive-Enhancing Properties.; ACS Pharmacol Transl Sci, 9: 141-152 |
|
GSE301918 |
| Borgan, Eldrid et al. (2013) Subtype-specific response to bevacizumab is reflected in the metabolome and transcriptome of breast cancer xenografts.; Mol Oncol, 7: 130-42 |
|
GSE37543 |
| Borges, Karin et al. (2007) Gene expression changes after seizure preconditioning in the three major hippocampal cell layers.; Neurobiol Dis, 26: 66-77 |
|
GSE1994 |
| Borggrewe, Malte et al. (2021) Regionally diverse astrocyte subtypes and their heterogeneous response to EAE.; Glia, 69: 1140-1154 |
|
GSE136358.2 GSE136358.1 |
| Borgognone, Alessandra et al. (2024) Lamivudine modulates the expression of neurological impairment-related genes and LINE-1 retrotransposons in brain tissues of a Down syndrome mouse model.; Front Aging Neurosci, 16: 1386944 |
|
GSE252135 |
| Borisova, Ekaterina et al. (2024) Protein translation rate determines neocortical neuron fate.; Nat Commun, 15: 4879 |
|
GSE172489 |
| Borjabad, Alejandra et al. (2010) Gene expression profiles of HIV-1-infected glia and brain: toward better understanding of the role of astrocytes in HIV-1-associated neurocognitive disorders.; J Neuroimmune Pharmacol, 5: 44-62 |
|
GSE17383 |
| Borjabad, Alejandra et al. (2011) Significant effects of antiretroviral therapy on global gene expression in brain tissues of patients with HIV-1-associated neurocognitive disorders.; PLoS Pathog, 7: e1002213 |
|
GSE28160 |
| Borjabad, Alejandra et al. (2024) Innate immune responses reverse HIV cognitive disease in mice: Profile by RNAseq in the brain.; Virology, 589: 109917 |
|
GSE245947 |
| Borjesson, Dori L et al. (2005) Insights into pathogen immune evasion mechanisms: Anaplasma phagocytophilum fails to induce an apoptosis differentiation program in human neutrophils.; J Immunol, 174: 6364-72 |
|
GSE2405 |
| Borkowski, Robert et al. (2015) Genetic mutation of p53 and suppression of the miR-17∼92 cluster are synthetic lethal in non-small cell lung cancer due to upregulation of vitamin D Signaling.; Cancer Res, 75: 666-75 |
|
GSE64007 |
| Borland, Gillian et al. (2016) Addiction to Runx1 is partially attenuated by loss of p53 in the Eµ-Myc lymphoma model.; Oncotarget, 7: 22973-87 |
|
GSE78001 |
| Bornstein, Bavat et al. (2023) Molecular characterization of the intact mouse muscle spindle using a multi-omics approach.; Elife, 12: [no pages] |
|
GSE208147 |
| Bornstein, Chamutal et al. (2014) A negative feedback loop of transcription factors specifies alternative dendritic cell chromatin States.; Mol Cell, 56: 749-62 |
|
GSE62704 |
| Borovecki, F et al. (2005) Genome-wide expression profiling of human blood reveals biomarkers for Huntington's disease.; Proc Natl Acad Sci U S A, 102: 11023-8 |
|
GSE1751 |
| Borrelli, Kristyn N et al. (2021) Sex Differences in Behavioral and Brainstem Transcriptomic Neuroadaptations following Neonatal Opioid Exposure in Outbred Mice.; eNeuro, 8: [no pages] |
|
GSE141066 |
| Borrelli, Kristyn N et al. (2023) Decreased myelin-related gene expression in the nucleus accumbens during spontaneous neonatal opioid withdrawal in the absence of long-term behavioral effects in adult outbred CFW mice.; Neuropharmacology, 240: 109732 |
|
GSE239919 |
| Borromeo, Mark D et al. (2014) A transcription factor network specifying inhibitory versus excitatory neurons in the dorsal spinal cord.; Development, 141: 2803-12 |
|
GSE55831 |
| Borràs-Fresneda, Mireia et al. (2016) Differences in DNA Repair Capacity, Cell Death and Transcriptional Response after Irradiation between a Radiosensitive and a Radioresistant Cell Line.; Sci Rep, 6: 27043 |
|
GSE80207 |
| Borst, Sara et al. (2021) Study of inherited thrombocytopenia resulting from mutations in ETV6 or RUNX1 using a human pluripotent stem cell model.; Stem Cell Reports, 16: 1458-1467 |
|
GSE168326 |
| Bortner, Carl D et al. (2022) Overcoming apoptotic resistance afforded by Bcl-2 in lymphoid tumor cells: a critical role for dexamethasone.; Cell Death Discov, 8: 494 |
|
GSE210375 |
| Bortolozzi, Roberta et al. (2018) AKR1C enzymes sustain therapy resistance in paediatric T-ALL.; Br J Cancer, 118: 985-994 |
|
GSE87865 |
| Bos, Paula D et al. (2009) Genes that mediate breast cancer metastasis to the brain.; Nature, 459: 1005-9 |
|
GSE12237 GSE12276 |
| Bosch, Ana et al. (2015) PI3K inhibition results in enhanced estrogen receptor function and dependence in hormone receptor-positive breast cancer.; Sci Transl Med, 7: 283ra51 |
|
GSE64033 |
| Boschen, Karen E et al. (2021) Transcriptomic analyses of gastrulation-stage mouse embryos with differential susceptibility to alcohol.; Dis Model Mech, 14: [no pages] |
|
GSE163796 |
| Boschen, Karen E et al. (2022) Short-term transcriptomic changes in the mouse neural tube induced by an acute alcohol exposure.; Alcohol, [no vol.]: [no pages] |
|
GSE199646 |
| Bosco, A et al. (2010) Decreased activation of inflammatory networks during acute asthma exacerbations is associated with chronic airflow obstruction.; Mucosal Immunol, 3: 399-409 |
|
GSE19903 |
| Bosco, Anthony et al. (2012) Interferon regulatory factor 7 is a major hub connecting interferon-mediated responses in virus-induced asthma exacerbations in vivo.; J Allergy Clin Immunol, 129: 88-94 |
|
GSE30326 |
| Böiers, Charlotta et al. (2013) Lymphomyeloid contribution of an immune-restricted progenitor emerging prior to definitive hematopoietic stem cells.; Cell Stem Cell, 13: 535-48 |
|
GSE50896 |