List of all 20,326 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Bosco, Anthony et al. (2009) A network modeling approach to analysis of the Th2 memory responses underlying human atopic disease.; J Immunol, 182: 6011-21 |
|
GSE14908 |
| Bosco, Nazario et al. (2023) KaryoCreate: A CRISPR-based technology to study chromosome-specific aneuploidy by targeting human centromeres.; Cell, 186: 1985-2001.e19 |
|
GSE217325 |
| Bosco, Patrick et al. (2024) Generating iAstrocytes From Human Induced Pluripotent Stem Cells by Combining Low-Density Passaging of Neural Progenitor Cells and Transcription Factor NFIA Transdifferentiation.; Curr Protoc, 4: e70049 |
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GSE273666 |
| Bose, Mahima et al. (2025) LHX2 regulates dendritic morphogenesis in layer II/III neurons of the neocortex.; Sci Adv, 11: eado1384 |
|
GSE253914 |
| Bose, Rohit et al. (2017) ERF mutations reveal a balance of ETS factors controlling prostate oncogenesis.; Nature, 546: 671-675 |
|
GSE83652 |
| Bose, Shikha et al. (2009) The ATM tumour suppressor gene is down-regulated in EBV-associated nasopharyngeal carcinoma.; J Pathol, 217: 345-52 |
|
GSE13597 |
| Boskovic, Pavle et al. (2024) Branched-chain amino acid transaminase 1 regulates glioblastoma cell plasticity and contributes to immunosuppression.; Neuro Oncol, 26: 251-265 |
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GSE247299 |
| Bosone, Camilla et al. (2024) A polarized FGF8 source specifies frontotemporal signatures in spatially oriented cell populations of cortical assembloids.; Nat Methods, 21: 2147-2159 |
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GSE175592 GSE231318 |
| Bosotti, Roberta et al. (2012) Transcriptional analysis of the Aurora inhibitor Danusertib leading to biomarker identification in TP53 wild type cells.; Gene, 494: 202-8 |
|
GSE24547 |
| Bosquez Huerta, Navish A et al. (2025) Sex-specific astrocyte regulation of spinal motor circuits by Nkx6.1.; Cell Rep, 44: 115121 |
|
GSE282689 |
| Bossel Ben-Moshe, Noa et al. (2012) Context-specific microRNA analysis: identification of functional microRNAs and their mRNA targets.; Nucleic Acids Res, 40: 10614-27 |
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GSE33538 |
| Bossers, Koen et al. (2010) Intensity-based analysis of dual-color gene expression data as an alternative to ratio-based analysis to enhance reproducibility.; BMC Genomics, 11: 112 |
|
GSE12553 |
| Bossé, Yohan et al. (2009) Refining molecular pathways leading to calcific aortic valve stenosis by studying gene expression profile of normal and calcified stenotic human aortic valves.; Circ Cardiovasc Genet, 2: 489-98 |
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GSE12644 |
| Bot, Anna Maria et al. (2013) Alterations in miRNA levels in the dentate gyrus in epileptic rats.; PLoS One, 8: e76051 |
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GSE49849 |
| Botermann, Dominik Simon et al. (2021) Hedgehog signaling in endocrine and folliculo-stellate cells of the adult pituitary.; J Endocrinol, 248: 303-316 |
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GSE153550 |
| Botling, Johan et al. (2013) Biomarker discovery in non-small cell lung cancer: integrating gene expression profiling, meta-analysis, and tissue microarray validation.; Clin Cancer Res, 19: 194-204 |
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GSE37745 |
| Bott, Matthew et al. (2011) The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma.; Nat Genet, 43: 668-72 |
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GSE29354 |
| Botta-Orfila, Teresa et al. (2012) Brain transcriptomic profiling in idiopathic and LRRK2-associated Parkinson's disease.; Brain Res, 1466: 152-7 |
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GSE34516 |
| Botta-Orfila, Teresa et al. (2012) Microarray expression analysis in idiopathic and LRRK2-associated Parkinson's disease.; Neurobiol Dis, 45: 462-8 |
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GSE23290 |
| Bottelbergs, Astrid et al. (2012) Peroxisome deficiency but not the defect in ether lipid synthesis causes activation of the innate immune system and axonal loss in the central nervous system.; J Neuroinflammation, 9: 61 |
|
GSE31938 |
| Bottomly, Daniel et al. (2011) Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays.; PLoS One, 6: e17820 |
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GSE26024.1 GSE26024.2 |
| Bottomly, Daniel et al. (2012) Expression quantitative trait Loci for extreme host response to influenza a in pre-collaborative cross mice.; G3 (Bethesda), 2: 213-21 |
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GSE30506 |
| Bottoni, Giulia et al. (2019) CSL controls telomere maintenance and genome stability in human dermal fibroblasts.; Nat Commun, 10: 3884 |
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GSE113542 |
| Bou-Rouphael, Johnny et al. (2025) Heterozygous pathogenic variants in the splicing factor SF1 lead to a large spectrum of neurodevelopmental disorders.; Am J Hum Genet, 112: 2605-2624 |
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GSE288121 |
| Bou-Tayeh, Berna et al. (2021) Chronic IL-15 Stimulation and Impaired mTOR Signaling and Metabolism in Natural Killer Cells During Acute Myeloid Leukemia.; Front Immunol, 12: 730970 |
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GSE180409 |
| Boucas, Jorge et al. (2015) Label-Free Protein-RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression.; PLoS One, 10: e0125745 |
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GSE67266 |
| Bouche, Axelle et al. (2023) In vitro-generated human muscle reserve cells are heterogeneous for Pax7 with distinct molecular states and metabolic profiles.; Stem Cell Res Ther, 14: 243 |
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GSE233597 |
| Boucherat, Olivier et al. (2015) Epithelial inactivation of Yy1 abrogates lung branching morphogenesis.; Development, 142: 2981-95 |
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GSE66171 |
| Bouchet, Audrey et al. (2013) Early gene expression analysis in 9L orthotopic tumor-bearing rats identifies immune modulation in molecular response to synchrotron microbeam radiation therapy.; PLoS One, 8: e81874 |
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GSE50478 |
| Boudil, Amine et al. (2015) IL-7 coordinates proliferation, differentiation and Tcra recombination during thymocyte ?-selection.; Nat Immunol, 16: 397-405 |
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GSE63932 |
| Boudreault, Francis et al. (2017) Zinc deficiency primes the lung for ventilator-induced injury.; JCI Insight, 2: [no pages] |
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GSE80161 |
| Bough, Kristopher J et al. (2006) Mitochondrial biogenesis in the anticonvulsant mechanism of the ketogenic diet.; Ann Neurol, 60: 223-35 |
|
GSE1155 |
| Boukas, Leandros et al. (2023) Neuron-specific chromatin disruption at CpG islands and aging-related regions in Kabuki syndrome mice.; bioRxiv, [no vol.]: [no pages] |
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GSE263144 |
| Boulaire, Jérôme et al. (2009) Gene expression profiling to define host response to baculoviral transduction in the brain.; J Neurochem, 109: 1203-14 |
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GSE9834 GSE9835 GSE9833 |
| Boulay, Anne-Cécile et al. (2017) Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface.; Cell Discov, 3: 17005 |
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GSE72937 GSE76299 |
| Boulay, Anne-Cécile et al. (2018) Connexin 43 Controls the Astrocyte Immunoregulatory Phenotype.; Brain Sci, 8: [no pages] |
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GSE110721 |
| Boulay, Gaylor et al. (2024) EWS-WT1 fusion isoforms establish oncogenic programs and therapeutic vulnerabilities in desmoplastic small round cell tumors.; Nat Commun, 15: 7460 |
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GSE212976 |
| Boulling, Arnaud et al. (2013) Identification of HMX1 target genes: a predictive promoter model approach.; Mol Vis, 19: 1779-94 |
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GSE47002 |
| Bourdeau, Véronique et al. (2008) Mechanisms of primary and secondary estrogen target gene regulation in breast cancer cells.; Nucleic Acids Res, 36: 76-93 |
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GSE8597 |
| Bourdeaut, Franck et al. (2009) Cholinergic switch associated with morphological differentiation in neuroblastoma.; J Pathol, 219: 463-72 |
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GSE14880 |
| Bourner, Luke A et al. (2022) AhR promotes phosphorylation of ARNT isoform 1 in human T cell malignancies as a switch for optimal AhR activity.; Proc Natl Acad Sci U S A, 119: e2114336119 |
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GSE184151.1 GSE184151.2 |
| Bourque, Kyla et al. (2023) Comparing the signaling and transcriptome profiling landscapes of human iPSC-derived and primary rat neonatal cardiomyocytes.; Sci Rep, 13: 12248 |
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GSE225707.1 GSE225707.2 |
| Bourquin, Jean-Pierre et al. (2006) Identification of distinct molecular phenotypes in acute megakaryoblastic leukemia by gene expression profiling.; Proc Natl Acad Sci U S A, 103: 3339-44 |
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GSE4119 GSE83449 |
| Bouschet, Tristan et al. (2017) In Vitro Corticogenesis from Embryonic Stem Cells Recapitulates the In Vivo Epigenetic Control of Imprinted Gene Expression.; Cereb Cortex, 27: 2418-2433 |
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GSE58523.2 GSE58523.1 |
| Bousman, Chad A et al. (2010) Preliminary evidence of ubiquitin proteasome system dysregulation in schizophrenia and bipolar disorder: convergent pathway analysis findings from two independent samples.; Am J Med Genet B Neuropsychiatr Genet, 153B: 494-502 |
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GSE18312 |
| Boussouar, F et al. (2014) A specific CBP/p300-dependent gene expression programme drives the metabolic remodelling in late stages of spermatogenesis.; Andrology, 2: 351-9 |
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GSE55767 |
| Boutaoui, Nadia et al. (2019) Epigenome-wide effects of vitamin D on asthma bronchial epithelial cells.; Epigenetics, 14: 844-849 |
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GSE106885 |
| Boutej, Hejer et al. (2017) Diverging mRNA and Protein Networks in Activated Microglia Reveal SRSF3 Suppresses Translation of Highly Upregulated Innate Immune Transcripts.; Cell Rep, 21: 3220-3233 |
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GSE107034 |
| Boutelle, Anthony M et al. (2025) Integrative multiomic approaches reveal ZMAT3 and p21 as conserved hubs in the p53 tumor suppression network.; Cell Death Differ, 32: 1954-1969 |
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GSE289471 |
| Boutou, Athena et al. (2024) Microglia regulate cortical remyelination via TNFR1-dependent phenotypic polarization.; Cell Rep, 43: 114894 |
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GSE278199 |
| Boutros, Paul C et al. (2011) mRNA levels in control rat liver display strain-specific, hereditary, and AHR-dependent components.; PLoS One, 6: e18337 |
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GSE10448 |
| Boutz, Paul L et al. (2015) Detained introns are a novel, widespread class of post-transcriptionally spliced introns.; Genes Dev, 29: 63-80 |
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GSE57231 |
| Bovee, Corinne E et al. (2024) Perilipin 5 Phosphorylation is Dispensable for Upregulation of Hepatic Lipid Metabolism Genes upon Fasting but Required for Insulin Receptor Substrate 2 Expression in Male Mice.; bioRxiv, [no vol.]: [no pages] |
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GSE275608 |
| Bovio, Patrick Piero et al. (2019) Differential Methylation of H3K79 Reveals DOT1L Target Genes and Function in the Cerebellum In Vivo.; Mol Neurobiol, 56: 4273-4287 |
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GSE101945 |
| Bowden, Nikola A et al. (2013) Regulators of global genome repair do not respond to DNA damaging therapy but correlate with survival in melanoma.; PLoS One, 8: e70424 |
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GSE47980 |
| Bowen, Charles M et al. (2023) Naproxen chemoprevention induces proliferation of cytotoxic lymphocytes in Lynch Syndrome colorectal mucosa.; Front Immunol, 14: 1162669 |
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GSE144381.2 GSE144381.1 |
| Bowen, Joanne M et al. (2007) Gene expression analysis of multiple gastrointestinal regions reveals activation of common cell regulatory pathways following cytotoxic chemotherapy.; Int J Cancer, 121: 1847-56 |
|
GSE11722 |
| Bowen, Margot E et al. (2019) The Spatiotemporal Pattern and Intensity of p53 Activation Dictates Phenotypic Diversity in p53-Driven Developmental Syndromes.; Dev Cell, 50: 212-228.e6 |
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GSE111753 GSE128191 |
| Bowen, Nathan J et al. (2009) Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells.; BMC Med Genomics, 2: 71 |
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GSE14407 |
| Bowler, Russell P et al. (2002) A catalytic antioxidant (AEOL 10150) attenuates expression of inflammatory genes in stroke.; Free Radic Biol Med, 33: 1141-52 |
|
GSE63 |
| Bowles, Kathryn R et al. (2021) ELAVL4, splicing, and glutamatergic dysfunction precede neuron loss in MAPT mutation cerebral organoids.; Cell, 184: 4547-4563.e17 |
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GSE171343 |
| Bowles, Kathryn R et al. (2024) Development of MAPT S305 mutation human iPSC lines exhibiting elevated 4R tau expression and functional alterations in neurons and astrocytes.; Cell Rep, 43: 115013 |
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GSE260517 |
| Bowman, Robert L et al. (2016) Macrophage Ontogeny Underlies Differences in Tumor-Specific Education in Brain Malignancies.; Cell Rep, 17: 2445-2459 |
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GSE86573 |
| Bowyer, John F et al. (2015) Evaluating the Stability of RNA-Seq Transcriptome Profiles and Drug-Induced Immune-Related Expression Changes in Whole Blood.; PLoS One, 10: e0133315 |
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GSE64778 |
| Boxer, Lisa D et al. (2020) MeCP2 Represses the Rate of Transcriptional Initiation of Highly Methylated Long Genes.; Mol Cell, 77: 294-309.e9 |
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GSE139508 GSE128178 |
| Boyd, Andrea I et al. (2025) Nasal microbionts differentially colonize and elicit cytokines in human nasal epithelial organoids.; mSphere, 10: e0049325 |
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GSE277582 |
| Boyd, Penelope J et al. (2017) Bioenergetic status modulates motor neuron vulnerability and pathogenesis in a zebrafish model of spinal muscular atrophy.; PLoS Genet, 13: e1006744 |
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GSE86908 |
| Boyd, Rachel J et al. (2023) Evaluating the mouse neural precursor line, SN4741, as a suitable proxy for midbrain dopaminergic neurons.; Res Sq, [no vol.]: [no pages] |
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GSE225071 |
| Boyer, Justin G et al. (2022) Depletion of skeletal muscle satellite cells attenuates pathology in muscular dystrophy.; Nat Commun, 13: 2940 |
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GSE168703 |
| Boyle, Jay O et al. (2010) Effects of cigarette smoke on the human oral mucosal transcriptome.; Cancer Prev Res (Phila), 3: 266-78 |
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GSE17913 |
| Bozdag, Deniz et al. (2024) Dysregulation of adipogenesis and disrupted lipid metabolism by the antidepressants citalopram and sertraline.; Toxicol Appl Pharmacol, 486: 116937 |
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GSE242103 |
| Bozek, Katarzyna et al. (2014) Exceptional evolutionary divergence of human muscle and brain metabolomes parallels human cognitive and physical uniqueness.; PLoS Biol, 12: e1001871 |
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GSE49379.3 GSE49379.1 |
| Bozulic, Lana et al. (2008) PKBalpha/Akt1 acts downstream of DNA-PK in the DNA double-strand break response and promotes survival.; Mol Cell, 30: 203-13 |
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GSE9146 |
| Braakhuis, B J M et al. (2013) Expression signature in peripheral blood cells for molecular diagnosis of head and neck squamous cell carcinoma.; Oral Dis, 19: 452-5 |
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GSE39400 |
| Brachmann, Saskia M et al. (2012) Characterization of the mechanism of action of the pan class I PI3K inhibitor NVP-BKM120 across a broad range of concentrations.; Mol Cancer Ther, 11: 1747-57 |
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GSE33643 |
| Bracko, Oliver et al. (2012) Gene expression profiling of neural stem cells and their neuronal progeny reveals IGF2 as a regulator of adult hippocampal neurogenesis.; J Neurosci, 32: 3376-87 |
|
GSE21208 |
| Bradesi, Sylvie et al. (2015) Identification of Spinal Cord MicroRNA and Gene Signatures in a Model of Chronic Stress-Induced Visceral Hyperalgesia in Rat.; PLoS One, 10: e0130938 |
|
GSE67830 |
| Bradford, Blair U et al. (2011) Interstrain differences in the liver effects of trichloroethylene in a multistrain panel of inbred mice.; Toxicol Sci, 120: 206-17 |
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GSE24278 |
| Bradley, Allyssa et al. (2025) Targeting ATF6 reduces pathological neovascularization and improves visual outcomes in retinal disease models.; Sci Rep, 15: 33070 |
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GSE292097.1 GSE292097.2 |
| Bradley, Robert A et al. (2019) Regionally specified human pluripotent stem cell-derived astrocytes exhibit different molecular signatures and functional properties.; Development, 146: [no pages] |
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GSE133489 |
| Bradner, James E et al. (2010) Chemical genetic strategy identifies histone deacetylase 1 (HDAC1) and HDAC2 as therapeutic targets in sickle cell disease.; Proc Natl Acad Sci U S A, 107: 12617-22 |
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GSE22366 |
| Brady, Colleen A et al. (2011) Distinct p53 transcriptional programs dictate acute DNA-damage responses and tumor suppression.; Cell, 145: 571-83 |
|
GSE27901 |
| Brady, Jennifer J et al. (2013) Early role for IL-6 signalling during generation of induced pluripotent stem cells revealed by heterokaryon RNA-Seq.; Nat Cell Biol, 15: 1244-52 |
|
GSE46104 |
| Brady, Jennifer J et al. (2016) An Arntl2-Driven Secretome Enables Lung Adenocarcinoma Metastatic Self-Sufficiency.; Cancer Cell, 29: 697-710 |
|
GSE72942 |
| Brady, Owen A et al. (2018) The transcription factors TFE3 and TFEB amplify p53 dependent transcriptional programs in response to DNA damage.; Elife, 7: [no pages] |
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GSE118517 GSE118516 |