List of all 16,751 published papers with data in Gemma:

To search for a paper or experiment and see more details, visit the annotated paper search page.

Breslin, Gavin et al. (2013) Perceived control over physical and mental well-being: the effects of gender, age and social class.; J Health Psychol, [no vol.]: [no pages] PubMed link GSE21565  
Bresolin, S et al. (2012) Gene expression signatures of pediatric myelodysplastic syndromes are associated with risk of evolution into acute myeloid leukemia.; Leukemia, [no vol.]: [no pages] PubMed link GSE29326  
Bresolin, Silvia et al. (2010) Gene expression-based classification as an independent predictor of clinical outcome in juvenile myelomonocytic leukemia.; J Clin Oncol, 28: 1919-27 PubMed link GSE14858  
Bressan, Raul Bardini et al. (2021) Regional identity of human neural stem cells determines oncogenic responses to histone H3.3 mutants.; Cell Stem Cell, 28: 877-893.e9 PubMed link GSE163044  
Bresser, Kaspar et al. (2020) A mouse model that is immunologically tolerant to reporter and modifier proteins.; Commun Biol, 3: 273 PubMed link GSE147757  
Breynaert, Christine et al. (2013) Unique gene expression and MR T2 relaxometry patterns define chronic murine dextran sodium sulphate colitis as a model for connective tissue changes in human Crohn's disease.; PLoS One, 8: e68876 PubMed link GSE42768  
Breynaert, Christine et al. (2016) Genetic Deletion of Tissue Inhibitor of Metalloproteinase-1/TIMP-1 Alters Inflammation and Attenuates Fibrosis in Dextran Sodium Sulphate-induced Murine Models of Colitis.; J Crohns Colitis, [no vol.]: [no pages] PubMed link GSE73424  
Brichta, Lars et al. (2015) Identification of neurodegenerative factors using translatome-regulatory network analysis.; Nat Neurosci, 18: 1325-33 PubMed link GSE54795   GSE64452   GSE64526   GSE70133  
Brida, Kasey L et al. (2024) Reelin marks cocaine-activated striatal ensembles, promotes neuronal excitability, and regulates cocaine reward.; bioRxiv, [no vol.]: [no pages] PubMed link GSE269366  
Bridges, James P et al. (2014) Epithelial SCAP/INSIG/SREBP signaling regulates multiple biological processes during perinatal lung maturation.; PLoS One, 9: e91376 PubMed link GSE53397  
Bridges, Kamiya et al. (2022) Loss ofRunx1Induces Granulosa Cell Defects and Development of Ovarian Tumors in the Mouse.; Int J Mol Sci, 23: [no pages] PubMed link GSE211241  
Briese, Michael et al. [Unknown date]Loss of Tdp-43 disrupts the axonal transcriptome of motoneurons accompanied by impaired axonal translation and mitochondria function.; Acta Neuropathol Commun, 8: 116 PubMed link GSE147607  
Brifault, Coralie et al. (2020) Deletion of the Gene Encoding the NMDA Receptor GluN1 Subunit in Schwann Cells Causes Ultrastructural Changes in Remak Bundles and Hypersensitivity in Pain Processing.; J Neurosci, 40: 9121-9136 PubMed link GSE154182  
Briggs, James A et al. (2013) Integration-free induced pluripotent stem cells model genetic and neural developmental features of down syndrome etiology.; Stem Cells, 31: 467-78 PubMed link GSE42956  
Brightman, Diana S et al. [Unknown date]MLL1 is essential for retinal neurogenesis and horizontal inner neuron integrity.; Sci Rep, 8: 11902 PubMed link GSE103264  
Brigidi, G Stefano et al. (2019) Genomic Decoding of Neuronal Depolarization by Stimulus-Specific NPAS4 Heterodimers.; Cell, 179: 373-391.e27 PubMed link GSE134203  
Brina, Daniela et al. (2015) eIF6 coordinates insulin sensitivity and lipid metabolism by coupling translation to transcription.; Nat Commun, 6: 8261 PubMed link GSE61121  
Brinkmann, Christel Rothe et al. (2018) Treatment of HIV-Infected Individuals with the Histone Deacetylase Inhibitor Panobinostat Results in Increased Numbers of Regulatory T Cells and LimitsEx VivoLipopolysaccharide-Induced Inflammatory Responses.; mSphere, 3: [no pages] PubMed link GSE109792  
Brinkmeier, Michelle L et al. (2020) Rathke's cleft-like cysts arise from Isl1 deletion in murine pituitary progenitors.; J Clin Invest, 130: 4501-4515 PubMed link GSE149019  
Briot, Anaïs et al. (2015) Endothelial NOTCH1 is suppressed by circulating lipids and antagonizes inflammation during atherosclerosis.; J Exp Med, 212: 2147-63 PubMed link GSE72633  
Briso, Eva M et al. (2013) Inflammation-mediated skin tumorigenesis induced by epidermal c-Fos.; Genes Dev, 27: 1959-73 PubMed link GSE50621  
Brito, Ariadna et al. (2021) Cell fusion enhances energy metabolism of mesenchymal tumor hybrid cells to sustain their proliferation and invasion.; BMC Cancer, 21: 863 PubMed link GSE171471  
Brocato, Emily R et al. (2023) Adolescent binge ethanol impacts H3K36me3 regulation of synaptic genes.; Front Mol Neurosci, 16: 1082104 PubMed link GSE220745  
Brock, Amy et al. (2014) Silencing HoxA1 by intraductal injection of siRNA lipidoid nanoparticles prevents mammary tumor progression in mice.; Sci Transl Med, 6: 217ra2 PubMed link GSE50813  
Brockington, Alice et al. (2013) Unravelling the enigma of selective vulnerability in neurodegeneration: motor neurons resistant to degeneration in ALS show distinct gene expression characteristics and decreased susceptibility to excitotoxicity.; Acta Neuropathol, 125: 95-109 PubMed link GSE40438  
Brodehl, Andreas et al. (2017) Transgenic mice overexpressing desmocollin-2 (DSC2) develop cardiomyopathy associated with myocardial inflammation and fibrotic remodeling.; PLoS One, 12: e0174019 PubMed link GSE84645  
Broderick, Claire et al. (2021) Host transcriptional response to TB preventive therapy differentiates two sub-groups of IGRA-positive individuals.; Tuberculosis (Edinb), 127: 102033 PubMed link GSE153340  
Brodtkorb, Marianne et al. (2014) Whole-genome integrative analysis reveals expression signatures predicting transformation in follicular lymphoma.; Blood, 123: 1051-4 PubMed link GSE53820  
Broeren, Mathijs G A et al. (2016) Disease-Regulated Gene Therapy with Anti-Inflammatory Interleukin-10 Under the Control of the CXCL10 Promoter for the Treatment of Rheumatoid Arthritis.; Hum Gene Ther, 27: 244-54 PubMed link GSE77298.2  
Bronner, Iraad F et al. (2009) Comprehensive mRNA expression profiling distinguishes tauopathies and identifies shared molecular pathways.; PLoS One, 4: e6826 PubMed link E-MEXP-2280  
Brooks, Matthew J et al. (2011) Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.; Mol Vis, 17: 3034-54 PubMed link GSE174522   GSE33141   GSE180142  
Brooks, Matthew J et al. [Unknown date]Improved Retinal Organoid Differentiation by Modulating Signaling Pathways Revealed by Comparative Transcriptome Analyses with Development In Vivo.; Stem Cell Reports, 13: 891-905 PubMed link GSE102794   GSE136379  
Brooks, Michael D et al. (2014) PDE7B is a novel, prognostically significant mediator of glioblastoma growth whose expression is regulated by endothelial cells.; PLoS One, 9: e107397 PubMed link GSE51253  
Brose, Rebecca Deering et al. [Unknown date]Hydroxyurea attenuates oxidative, metabolic, and excitotoxic stress in rat hippocampal neurons and improves spatial memory in a mouse model of Alzheimer's disease.; Neurobiol Aging, 72: 121-133 PubMed link GSE111940  
Brosens, Jan J et al. (2014) Uterine selection of human embryos at implantation.; Sci Rep, 4: 3894 PubMed link GSE47019  
Brosius Lutz, Amanda et al. (2022) An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury.; J Neuroinflammation, 19: 105 PubMed link GSE177037  
Brouard, S et al. (2010) Comparative transcriptional and phenotypic peripheral blood analysis of kidney recipients under cyclosporin A or sirolimus monotherapy.; Am J Transplant, 10: 2604-14 PubMed link GSE22224  
Brousseau, Marine et al. (2020) MeCP2 is involved in random mono-allelic expression for a subset of human autosomal genes.; Biochim Biophys Acta Mol Basis Dis, 1866: 165730 PubMed link GSE140740  
Brouwers, Bas et al. (2014) Impaired islet function in commonly used transgenic mouse lines due to human growth hormone minigene expression.; Cell Metab, 20: 979-90 PubMed link GSE50851  
Brouwers, Bas et al. (2021) Loss ofFurinin β-Cells Induces an mTORC1-ATF4 Anabolic Pathway That Leads to β-Cell Dysfunction.; Diabetes, 70: 492-503 PubMed link GSE150312  
Browder, Kristen C et al. (2022) In vivo partial reprogramming alters age-associated molecular changes during physiological aging in mice.; Nat Aging, 2: 243-253 PubMed link GSE190984   GSE190983   GSE190985  
Brown, Ashley S et al. (2021) Intrauterine Growth Restriction Causes Abnormal Embryonic Dentate Gyrus Neurogenesis in Mouse Offspring That Leads to Adult Learning and Memory Deficits.; eNeuro, 8: [no pages] PubMed link GSE173845  
Brown, Christine E et al. (2013) Glioma IL13R?2 is associated with mesenchymal signature gene expression and poor patient prognosis.; PLoS One, 8: e77769 PubMed link GSE40904  
Brown, Elizabeth J et al. (2024) PRMT5 inhibition shows in vitro efficacy against H3K27M-altered diffuse midline glioma, but does not extend survival in vivo.; Sci Rep, 14: 328 PubMed link GSE230065  
Brown, Fiona C et al. [Unknown date]MEF2C Phosphorylation Is Required for Chemotherapy Resistance in Acute Myeloid Leukemia.; Cancer Discov, 8: 478-497 PubMed link GSE94453  
Brown, Jacob D et al. (2009) Expression profiling during ocular development identifies 2 Nlz genes with a critical role in optic fissure closure.; Proc Natl Acad Sci U S A, 106: 1462-7 PubMed link GSE13103  
Brown, Jacquelyn A et al. (2023) Rescue of Impaired Blood-Brain Barrier in Tuberous Sclerosis Complex Patient Derived Neurovascular Unit.; bioRxiv, [no vol.]: [no pages] PubMed link GSE235862  
Brown, Jonathan D et al. (2014) NF-κB directs dynamic super enhancer formation in inflammation and atherogenesis.; Mol Cell, 56: 219-231 PubMed link GSE53999  
Brown, Joseph N et al. (2008) HIV-1 activates macrophages independent of Toll-like receptors.; PLoS One, 3: e3664 PubMed link GSE13395  
Brown, Vanessa M et al. (2002) Multiplex three-dimensional brain gene expression mapping in a mouse model of Parkinson's disease.; Genome Res, 12: 868-84 PubMed link GSE30  
Browne, Caleb J et al. (2023) Transcriptional signatures of heroin intake and relapse throughout the brain reward circuitry in male mice.; Sci Adv, 9: eadg8558 PubMed link GSE228031.1   GSE228031.2  
Browne, E P et al. (2001) Altered cellular mRNA levels in human cytomegalovirus-infected fibroblasts: viral block to the accumulation of antiviral mRNAs.; J Virol, 75: 12319-30 PubMed link GSE675  
Brownell, Isaac et al. (2011) Nerve-derived sonic hedgehog defines a niche for hair follicle stem cells capable of becoming epidermal stem cells.; Cell Stem Cell, 8: 552-65 PubMed link GSE28108  
Browning, Rebekah L et al. (2016) Lenalidomide Induces Interleukin-21 Production by T Cells and Enhances IL21-Mediated Cytotoxicity in Chronic Lymphocytic Leukemia B Cells.; Cancer Immunol Res, 4: 698-707 PubMed link GSE79660  
Brownjohn, Philip W et al. (2018) Functional Studies of Missense TREM2 Mutations in Human Stem Cell-Derived Microglia.; Stem Cell Reports, 10: 1294-1307 PubMed link GSE110952  
Brownstein, Bernard H et al. (2006) Commonality and differences in leukocyte gene expression patterns among three models of inflammation and injury.; Physiol Genomics, 24: 298-309 PubMed link GSE2278  
Broyl, Annemiek et al. (2010) Gene expression profiling for molecular classification of multiple myeloma in newly diagnosed patients.; Blood, 116: 2543-53 PubMed link GSE19784  
Broz, Miranda L et al. (2014) Dissecting the tumor myeloid compartment reveals rare activating antigen-presenting cells critical for T cell immunity.; Cancer Cell, 26: 638-52 PubMed link GSE61462  
Brozzi, Flora et al. (2024) tRNA-derived fragments in T lymphocyte-beta cell crosstalk and in type 1 diabetes pathogenesis in NOD mice.; Diabetologia, 67: 2260-2274 PubMed link GSE242561  
Broët, Philippe et al. (2009) Prediction of clinical outcome in multiple lung cancer cohorts by integrative genomics: implications for chemotherapy selection.; Cancer Res, 69: 1055-62 PubMed link GSE10445  
Bruch-Oms, Marina et al. (2023) Analyzing the role of cancer-associated fibroblast activation on macrophage polarization.; Mol Oncol, 17: 1492-1513 PubMed link GSE206404  
Brucklacher, Robert M et al. (2008) Whole genome assessment of the retinal response to diabetes reveals a progressive neurovascular inflammatory response.; BMC Med Genomics, 1: 26 PubMed link GSE11733  
Bruedigam, Claudia et al. (2023) Gene Expression Analyses in Models of Rosiglitazone-Induced Physiological and Pathological Mineralization Identify Novel Targets to Improve Bone and Vascular Health.; Cells, 12: [no pages] PubMed link GSE67518  
Bruhn, Sören et al. (2014) A generally applicable translational strategy identifies S100A4 as a candidate gene in allergy.; Sci Transl Med, 6: 218ra4 PubMed link GSE46333  
Brun, Yseult F et al. (2008) Simultaneous modeling of concentration-effect and time-course patterns in gene expression data from microarrays.; Cancer Genomics Proteomics, 5: 43-53 PubMed link GSE8057  
Brune, Verena et al. (2008) Origin and pathogenesis of nodular lymphocyte-predominant Hodgkin lymphoma as revealed by global gene expression analysis.; J Exp Med, 205: 2251-68 PubMed link GSE12453  
Brunner, Alayne L et al. (2014) A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions.; Genome Biol, 15: R71 PubMed link GSE47462  
Bruno, Gennaro et al. (2023) β3-adrenergic receptor on tumor-infiltrating lymphocytes sustains IFN-γ-dependent PD-L1 expression and impairs anti-tumor immunity in neuroblastoma.; Cancer Gene Ther, 30: 890-904 PubMed link GSE209634  
Bruno, Ivone G et al. (2011) Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay.; Mol Cell, 42: 500-10 PubMed link GSE28889  
Bruns, I et al. (2009) The hematopoietic stem cell in chronic phase CML is characterized by a transcriptional profile resembling normal myeloid progenitor cells and reflecting loss of quiescence.; Leukemia, 23: 892-9 PubMed link GSE11889  
Bruns, Ingmar et al. (2012) Multiple myeloma-related deregulation of bone marrow-derived CD34(+) hematopoietic stem and progenitor cells.; Blood, 120: 2620-30 PubMed link GSE24870  
Brunskill, Eric W et al. (2011) Defining the molecular character of the developing and adult kidney podocyte.; PLoS One, 6: e24640 PubMed link GSE17218  
Brunskill, Eric W et al. (2014) A gene expression atlas of early craniofacial development.; Dev Biol, 391: 133-46 PubMed link GSE55966   GSE55964  
Brunskill, Eric W et al. (2014) Single cell dissection of early kidney development: multilineage priming.; Development, 141: 3093-101 PubMed link GSE64959  
Bruttger, Julia et al. (2015) Genetic Cell Ablation Reveals Clusters of Local Self-Renewing Microglia in the Mammalian Central Nervous System.; Immunity, 43: 92-106 PubMed link GSE68376  
Bruveris, Freya F et al. (2020) Human yolk sac-like haematopoiesis generatesRUNX1-,GFI1-and/orGFI1B-dependent blood andSOX17-positive endothelium.; Development, 147: [no pages] PubMed link GSE124084  
Bryant, C D et al. (2012) Congenic dissection of a major QTL for methamphetamine sensitivity implicates epistasis.; Genes Brain Behav, 11: 623-32 PubMed link GSE35139  
Bryant, Camron D et al. (2019) C57BL/6 substrain differences in inflammatory and neuropathic nociception and genetic mapping of a major quantitative trait locus underlying acute thermal nociception.; Mol Pain, 15: 1744806918825046 PubMed link GSE119719  
Bryant, Carson J et al. (2024) Discovery of novel microRNA mimic repressors of ribosome biogenesis.; Nucleic Acids Res, 52: 1988-2011 PubMed link GSE242754  
Brykczynska, Urszula et al. (2020) Distinct Transcriptional Responses across Tissue-Resident Macrophages to Short-Term and Long-Term Metabolic Challenge.; Cell Rep, 30: 1627-1643.e7 PubMed link GSE133127  
Brylka, Laura J et al. (2017) Post-weaning epiphysiolysis causes distal femur dysplasia and foreshortened hindlimbs in fetuin-A-deficient mice.; PLoS One, 12: e0187030 PubMed link GSE105139  
Bröhl, Dominique et al. (2012) Colonization of the satellite cell niche by skeletal muscle progenitor cells depends on Notch signals.; Dev Cell, 23: 469-81 PubMed link GSE39379  
Bröske, Ann-Marie et al. (2009) DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction.; Nat Genet, 41: 1207-15 PubMed link GSE17765.2  
Brüstle, Anne et al. (2012) The NF-?B regulator MALT1 determines the encephalitogenic potential of Th17 cells.; J Clin Invest, 122: 4698-709 PubMed link GSE40931  
Brīvība, Monta et al. (2023) Metformin targets intestinal immune system signaling pathways in a high-fat diet-induced mouse model of obesity and insulin resistance.; Front Endocrinol (Lausanne), 14: 1232143 PubMed link GSE240206  
Bu, Dawei et al. (2013) Identification of breast cancer DNA methylation markers optimized for fine-needle aspiration samples.; Cancer Epidemiol Biomarkers Prev, 22: 2212-21 PubMed link GSE41692  
Bubak, Andrew N et al. (2022) Targeted RNA Sequencing of VZV-Infected Brain Vascular Adventitial Fibroblasts Indicates That Amyloid May Be Involved in VZV Vasculopathy.; Neurol Neuroimmunol Neuroinflamm, 9: [no pages] PubMed link GSE175797  
Bucasas, Kristine L et al. (2011) Early patterns of gene expression correlate with the humoral immune response to influenza vaccination in humans.; J Infect Dis, 203: 921-9 PubMed link GSE48023  
Buchacher, Tanja et al. (2023) PIM kinases regulate early human Th17 cell differentiation.; Cell Rep, 42: 113469 PubMed link GSE231650  
Bucher, Philip et al. (2020) Targeting chronic NFAT activation with calcineurin inhibitors in diffuse large B-cell lymphoma.; Blood, 135: 121-132 PubMed link GSE140882