List of all 16,751 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Buchholz, David E et al. (2020) Novel genetic features of human and mouse Purkinje cell differentiation defined by comparative transcriptomics.; Proc Natl Acad Sci U S A, 117: 15085-15095 |
|
GSE140299 GSE140306 |
| Buchner, David A et al. (2015) Zinc finger protein 407 (ZFP407) regulates insulin-stimulated glucose uptake and glucose transporter 4 (Glut4) mRNA.; J Biol Chem, 290: 6376-86 |
|
GSE64757 |
| Buchstaller, Johanna et al. (2004) Efficient isolation and gene expression profiling of small numbers of neural crest stem cells and developing Schwann cells.; J Neurosci, 24: 2357-65 |
|
GSE972 |
| Buchwalter, Gilles et al. (2013) PDEF promotes luminal differentiation and acts as a survival factor for ER-positive breast cancer cells.; Cancer Cell, 23: 753-67 |
|
GSE40985 GSE40986 |
| Buckberry, Sam et al. [Unknown date]Placental transcriptome co-expression analysis reveals conserved regulatory programs across gestation.; BMC Genomics, 18: 10 |
|
GSE77085 |
| Buckle, Adam et al. (2018) Polymer Simulations of Heteromorphic Chromatin Predict the 3D Folding of Complex Genomic Loci.; Mol Cell, 72: 786-797.e11 |
|
GSE119660 |
| Buckley, Shannon M et al. (2012) Regulation of pluripotency and cellular reprogramming by the ubiquitin-proteasome system.; Cell Stem Cell, 11: 783-98 |
|
GSE39772 |
| Budczies, Jan et al. (2011) Genome-wide gene expression profiling of formalin-fixed paraffin-embedded breast cancer core biopsies using microarrays.; J Histochem Cytochem, 59: 146-57 |
|
GSE11001 |
| Buechel, Heather M et al. (2011) Deep sleep and parietal cortex gene expression changes are related to cognitive deficits with age.; PLoS One, 6: e18387 |
|
GSE24515 |
| Buecker, Christa et al. (2014) Reorganization of enhancer patterns in transition from naive to primed pluripotency.; Cell Stem Cell, 14: 838-53 |
|
GSE56096 |
| Buettner, Victoria L et al. (2005) Novel paternally expressed intergenic transcripts at the mouse Prader-Willi/Angelman Syndrome locus.; Mamm Genome, 16: 219-27 |
|
GSE12230 GSE12227 |
| Buga, Ana Maria et al. (2014) Transcriptomics of post-stroke angiogenesis in the aged brain.; Front Aging Neurosci, 6: 44 |
|
GSE55260 |
| Buganim, Yosef et al. (2014) The developmental potential of iPSCs is greatly influenced by reprogramming factor selection.; Cell Stem Cell, 15: 295-309 |
|
GSE45173 |
| Bugge, Anne et al. (2009) The PPARgamma2 A/B-domain plays a gene-specific role in transactivation and cofactor recruitment.; Mol Endocrinol, 23: 794-808 |
|
GSE15433 |
| Buggele, William A et al. (2013) MicroRNA profiling of Sendai virus-infected A549 cells identifies miR-203 as an interferon-inducible regulator of IFIT1/ISG56.; J Virol, [no vol.]: [no pages] |
|
GSE47866 GSE47865 |
| Buick, Julie K et al. (2015) Integration of metabolic activation with a predictive toxicogenomics signature to classify genotoxic versus nongenotoxic chemicals in human TK6 cells.; Environ Mol Mutagen, 56: 520-34 |
|
GSE68855 |
| Buick, Julie K et al. (2022) Integrated Genotoxicity Testing of three anti-infective drugs using the TGx-DDI transcriptomic biomarker and high-throughput CometChip®assay in TK6 cells.; Front Toxicol, 4: 991590 |
|
GSE196372 |
| Bujor, Andreea M et al. (2020) Fli1 Downregulation in Scleroderma Myeloid Cells Has Profibrotic and Proinflammatory Effects.; Front Immunol, 11: 800 |
|
GSE144625 |
| Bukowski, Radek et al. (2017) Onset of human preterm and term birth is related to unique inflammatory transcriptome profiles at the maternal fetal interface.; PeerJ, 5: e3685 |
|
GSE73685 |
| Bulajić, Milica et al. (2020) Differential abilities to engage inaccessible chromatin diversify vertebrate Hox binding patterns.; Development, 147: [no pages] |
|
GSE142378 |
| Bull, Daniel et al. (2024) The hypermorphic PLCγ2 S707Y variant dysregulates microglial cell function - Insight into PLCγ2 activation in brain health and disease, and opportunities for therapeutic modulation.; Biochim Biophys Acta Mol Basis Dis, 1870: 166978 |
|
GSE227513 |
| Bull, Todd M et al. (2004) Gene microarray analysis of peripheral blood cells in pulmonary arterial hypertension.; Am J Respir Crit Care Med, 170: 911-9 |
|
GSE703 |
| Bullert, Amanda J et al. (2024) Effects of 28-day nose-only inhalation of PCB52 (2,2',5,5'-Tetrachlorobiphenyl) on the brain transcriptome.; Toxicology, 509: 153965 |
|
GSE246555 |
| Bullert, Amanda J et al. (2024) Interactions of Polychlorinated Biphenyls and Their Metabolites with the Brain and Liver Transcriptome of Female Mice.; ACS Chem Neurosci, 15: 3991-4009 |
|
GSE252621 |
| Bundy, Joseph L et al. (2019) Sex-biased hippocampal pathology in the 5XFAD mouse model of Alzheimer's disease: A multi-omic analysis.; J Comp Neurol, 527: 462-475 |
|
GSE97113 |
| Bundy, Joseph L et al. [Unknown date]Sex differences in the molecular signature of the developing mouse hippocampus.; BMC Genomics, 18: 237 |
|
GSE83931 |
| Bunt, Jens et al. (2012) OTX2 directly activates cell cycle genes and inhibits differentiation in medulloblastoma cells.; Int J Cancer, 131: E21-32 |
|
GSE22875 |
| Buqué, Aitziber et al. (2020) Immunoprophylactic and immunotherapeutic control of hormone receptor-positive breast cancer.; Nat Commun, 11: 3819 |
|
GSE151197 GSE150966 GSE150967 |
| Burban, Audrey et al. (2024) Targeting glioblastoma with a brain-penetrant drug that impairs brain tumor stem cells via NLE1-Notch1 complex.; Stem Cell Reports, 19: 1534-1547 |
|
GSE261132 |
| Burban, Audrey et al. (2025) Exploiting metabolic vulnerability in glioblastoma using a brain-penetrant drug with a safe profile.; EMBO Mol Med, 17: 469-503 |
|
GSE284766 |
| Burczynski, Michael E et al. (2006) Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells.; J Mol Diagn, 8: 51-61 |
|
GSE3365 |
| Burda, Joshua E et al. (2022) Divergent transcriptional regulation of astrocyte reactivity across disorders.; Nature, [no vol.]: [no pages] |
|
GSE199149 |
| Burdach, Stefan et al. (2009) Epigenetic maintenance of stemness and malignancy in peripheral neuroectodermal tumors by EZH2.; Cell Cycle, 8: 1991-6 |
|
GSE15890 |
| Burga, Laura N et al. (2009) Altered proliferation and differentiation properties of primary mammary epithelial cells from BRCA1 mutation carriers.; Cancer Res, 69: 1273-8 |
|
GSE13671 |
| Burger, Corinna et al. (2007) Changes in transcription within the CA1 field of the hippocampus are associated with age-related spatial learning impairments.; Neurobiol Learn Mem, 87: 21-41 |
|
GSE3531 |
| Burger, Corinna et al. (2008) Genome-wide analysis of aging and learning-related genes in the hippocampal dentate gyrus.; Neurobiol Learn Mem, 89: 379-96 |
|
GSE4821 |
| Burger, Jan A et al. (2009) High-level expression of the T-cell chemokines CCL3 and CCL4 by chronic lymphocytic leukemia B cells in nurselike cell cocultures and after BCR stimulation.; Blood, 113: 3050-8 |
|
GSE13811 |
| Burger, Laura L et al. (2018) Identification of Genes Enriched in GnRH Neurons by Translating Ribosome Affinity Purification and RNAseq in Mice.; Endocrinology, 159: 1922-1940 |
|
GSE110042 |
| Burgess-Herbert, Sarah L et al. (2008) Practical applications of the bioinformatics toolbox for narrowing quantitative trait loci.; Genetics, 180: 2227-35 |
|
GSE10493 |
| Burington, Bart et al. (2008) Tumor cell gene expression changes following short-term in vivo exposure to single agent chemotherapeutics are related to survival in multiple myeloma.; Clin Cancer Res, 14: 4821-9 |
|
GSE8546 |
| Burington, Bart et al. (2011) CD40 pathway activation status predicts response to CD40 therapy in diffuse large B cell lymphoma.; Sci Transl Med, 3: 74ra22 |
|
GSE18377 GSE18376 |
| Burleigh, Annika et al. (2012) Joint immobilization prevents murine osteoarthritis and reveals the highly mechanosensitive nature of protease expression in vivo.; Arthritis Rheum, 64: 2278-88 |
|
GSE26475 |
| Burmeister, Amanda R et al. (2022) Maternal Herpesviridae infection during pregnancy alters midbrain dopaminergic signatures in adult offspring.; Neurobiol Dis, 169: 105720 |
|
GSE162566 |
| Burnett, Lisa C et al. [Unknown date]Deficiency in prohormone convertase PC1 impairs prohormone processing in Prader-Willi syndrome.; J Clin Invest, 127: 293-305 |
|
GSE89991 |
| Burnett, Ryan et al. (2006) DNA sequence-specific polyamides alleviate transcription inhibition associated with long GAA.TTC repeats in Friedreich's ataxia.; Proc Natl Acad Sci U S A, 103: 11497-502 |
|
GSE5040 |
| Burney, Matthew J et al. (2013) An epigenetic signature of developmental potential in neural stem cells and early neurons.; Stem Cells, 31: 1868-80 |
|
GSE46791 |
| Burney, Richard O et al. (2007) Gene expression analysis of endometrium reveals progesterone resistance and candidate susceptibility genes in women with endometriosis.; Endocrinology, [no vol.]: [no pages] |
|
GSE6364 |
| Burns, Allison M et al. (2022) The HDAC inhibitor CI-994 acts as a molecular memory aid by facilitating synaptic and intracellular communication after learning.; Proc Natl Acad Sci U S A, 119: e2116797119 |
|
GSE185453 |
| Burns, Fredric J et al. (2002) The action of a dietary retinoid on gene expression and cancer induction in electron-irradiated rat skin.; J Radiat Res, 43 Suppl: S229-32 |
|
GSE284 |
| Buroker, Norman E et al. (2007) The dominant negative thyroid hormone receptor beta-mutant {Delta}337T alters PPAR{alpha} signaling in heart.; Am J Physiol Endocrinol Metab, 292: E453-60 |
|
GSE3067 |
| Burrack, Kristina S et al. (2018) Interleukin-15 Complex Treatment Protects Mice from Cerebral Malaria by Inducing Interleukin-10-Producing Natural Killer Cells.; Immunity, 48: 760-772.e4 |
|
GSE109586 |
| Burri, Lena et al. (2011) Differential effects of krill oil and fish oil on the hepatic transcriptome in mice.; Front Genet, 2: 45 |
|
GSE29572 |
| Burt, Philipp et al. (2023) Distribution modeling quantifies collective THcell decision circuits in chronic inflammation.; Sci Adv, 9: eadg7668 |
|
GSE200250 |
| Burton, Mark A et al. (2020) Folic Acid Induces Intake-Related Changes in the Mammary Tissue Transcriptome of C57BL/6 Mice.; Nutrients, 12: [no pages] |
|
GSE153732 |
| Burton, Matthew J et al. (2011) Conjunctival transcriptome in scarring trachoma.; Infect Immun, 79: 499-511 |
|
GSE23705 |
| Bury, Joanna J et al. [Unknown date]Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain.; Acta Neuropathol Commun, 9: 5 |
|
GSE161355 |
| Burzyn, Dalia et al. (2013) A special population of regulatory T cells potentiates muscle repair.; Cell, 155: 1282-95 |
|
GSE50096 GSE50097 |
| Busch, Albert et al. (2021) Lenvatinib halts aortic aneurysm growth by restoring smooth muscle cell contractility.; JCI Insight, 6: [no pages] |
|
GSE226736 |
| Busch, Wibke et al. (2010) Tungsten carbide cobalt nanoparticles exert hypoxia-like effects on the gene expression level in human keratinocytes.; BMC Genomics, 11: 65 |
|
GSE16727 |
| Bush, Erin C et al. (2017) PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens.; Nat Commun, 8: 105 |
|
GSE97460 |
| Bush, Kelly et al. (2023) A knockout-first model of H3f3a gene targeting leads to developmental lethality.; Genesis, [no vol.]: e23507 |
|
GSE216047 |
| Bushel, P R et al. (2007) Blood gene expression signatures predict exposure levels.; Proc Natl Acad Sci U S A, 104: 18211-6 |
|
GSE5593 |
| Busskamp, Volker et al. (2010) Genetic reactivation of cone photoreceptors restores visual responses in retinitis pigmentosa.; Science, 329: 413-7 |
|
GSE22338 |
| Busskamp, Volker et al. (2014) miRNAs 182 and 183 are necessary to maintain adult cone photoreceptor outer segments and visual function.; Neuron, 83: 586-600 |
|
GSE58498 |
| Busskamp, Volker et al. (2014) Rapid neurogenesis through transcriptional activation in human stem cells.; Mol Syst Biol, 10: 760 |
|
GSE60548 GSE62146 |
| Bussolati, Gianni et al. (2011) Formalin fixation at low temperature better preserves nucleic acid integrity.; PLoS One, 6: e21043 |
|
GSE27175 |
| Bussotti, Giovanni et al. (2016) Improved definition of the mouse transcriptome via targeted RNA sequencing.; Genome Res, 26: 705-16 |
|
GSE72311 |
| Bustamante, Angela C et al. (2020) Transcriptomic Profiles of Sepsis in the Human Brain.; Am J Respir Crit Care Med, [no vol.]: [no pages] |
|
GSE135838 |
| Bustos, Francisco et al. (2020) Functional Diversification of SRSF Protein Kinase to Control Ubiquitin-Dependent Neurodevelopmental Signaling.; Dev Cell, 55: 629-647.e7 |
|
GSE149554 |
| Bustos, Matias A et al. (2017) Genome-wide chromatin accessibility, DNA methylation and gene expression analysis of histone deacetylase inhibition in triple-negative breast cancer.; Genom Data, 12: 14-16 |
|
GSE92910 |
| Busuttil, Rita A et al. (2014) A signature predicting poor prognosis in gastric and ovarian cancer represents a coordinated macrophage and stromal response.; Clin Cancer Res, 20: 2761-72 |
|
GSE51105 |
| Butchar, Jonathan P et al. (2008) Microarray analysis of human monocytes infected with Francisella tularensis identifies new targets of host response subversion.; PLoS One, 3: e2924 |
|
GSE12108 |
| Butcher, Matthew J et al. (2023) GATA3 induces the pathogenicity of Th17 cells via regulating GM-CSF expression.; Front Immunol, 14: 1186580 |
|
GSE227394 |
| Buth, Jessie E et al. (2024) Foxp1 suppresses cortical angiogenesis and attenuates HIF-1alpha signaling to promote neural progenitor cell maintenance.; EMBO Rep, 25: 2202-2219 |
|
GSE217364 |
| Butler Iii, Robert R et al. (2020) The Genetic Relevance of Human Induced Pluripotent Stem Cell-Derived Microglia to Alzheimer's Disease and Major Neuropsychiatric Disorders.; Mol Neuropsychiatry, 5: 85-96 |
|
GSE129630 |
| Butovsky, Oleg et al. (2014) Identification of a unique TGF-?-dependent molecular and functional signature in microglia.; Nat Neurosci, 17: 131-43 |
|
GSE48579.3 |
| Butovsky, Oleg et al. (2015) Targeting miR-155 restores abnormal microglia and attenuates disease in SOD1 mice.; Ann Neurol, 77: 75-99 |
|
GSE52946 |
| Butte, A J et al. (2000) Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks.; Proc Natl Acad Sci U S A, 97: 12182-6 |
|
butte-relevance |
| Butti, Erica et al. (2022) Neural precursor cells tune striatal connectivity through the release of IGFBPL1.; Nat Commun, 13: 7579 |
|
GSE165815 |
| Buus, Terkild B et al. (2016) The major diversification of V?1.1(+) and V?2(+) thymocytes in mice occurs after commitment to the ?? T-cell lineage.; Eur J Immunol, [no vol.]: [no pages] |
|
GSE75920 |
| Buzzeo, Matthew P et al. (2007) Hematopoietic stem cell mobilization with G-CSF induces innate inflammation yet suppresses adaptive immune gene expression as revealed by microarray analysis.; Exp Hematol, 35: 1456-65 |
|
GSE7400 |
| Buzzi, Raphael M et al. (2021) Spatial transcriptome analysis defines heme as a hemopexin-targetable inflammatoxin in the brain.; Free Radic Biol Med, [no vol.]: [no pages] |
|
GSE182127 |
| Bye, Anja et al. (2008) Gene expression profiling of skeletal muscle in exercise-trained and sedentary rats with inborn high and low VO2max.; Physiol Genomics, 35: 213-21 |
|
GSE10527 |
| Bye, Chris R et al. (2015) Transcriptome analysis reveals transmembrane targets on transplantable midbrain dopamine progenitors.; Proc Natl Acad Sci U S A, 112: E1946-55 |
|
GSE65094 |
| Byers, Lauren Averett et al. (2013) An epithelial-mesenchymal transition gene signature predicts resistance to EGFR and PI3K inhibitors and identifies Axl as a therapeutic target for overcoming EGFR inhibitor resistance.; Clin Cancer Res, 19: 279-90 |
|
GSE32036 GSE32989 GSE33072 |
| Bykhovskaya, Yelena et al. (2009) Phenotypic expression of maternally inherited deafness is affected by RNA modification and cytoplasmic ribosomal proteins.; Mol Genet Metab, 97: 297-304 |
|
GSE9822 |
| Bünger, Meike et al. (2007) Genome-wide analysis of PPARalpha activation in murine small intestine.; Physiol Genomics, [no vol.]: [no pages] |
|
GSE5475 |
| Büttner, Petra et al. (2007) Exercise affects the gene expression profiles of human white blood cells.; J Appl Physiol (1985), 102: 26-36 |
|
GSE3606 |
| Büttner, Robert et al. (2018) Inflammaging impairs peripheral nerve maintenance and regeneration.; Aging Cell, 17: e12833 |
|
GSE137504 |