List of all 16,750 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Byles, Vanessa et al. (2021) Hepatic mTORC1 signaling activates ATF4 as part of its metabolic response to feeding and insulin.; Mol Metab, 53: 101309 |
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GSE173578 |
| Byrnes, Amy E et al. (2023) Lipid nanoparticle delivery limits antisense oligonucleotide activity and cellular distribution in the brain after intracerebroventricular injection.; Mol Ther Nucleic Acids, 32: 773-793 |
|
GSE220777 |
| Byrnes, Andrea et al. (2009) Gene expression in peripheral blood leukocytes in monozygotic twins discordant for chronic fatigue: no evidence of a biomarker.; PLoS One, 4: e5805 |
|
GSE16059 |
| Bystrykh, Leonid et al. (2005) Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.; Nat Genet, 37: 225-32 |
|
GSE2031 |
| Bøgsted, Martin et al. (2013) Proof of the concept to use a malignant B cell line drug screen strategy for identification and weight of melphalan resistance genes in multiple myeloma.; PLoS One, 8: e83252 |
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GSE22759 |
| Caba, Octavio et al. (2014) Transcriptional profiling of peripheral blood in pancreatic adenocarcinoma patients identifies diagnostic biomarkers.; Dig Dis Sci, 59: 2714-20 |
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GSE49641 |
| Cabeza-Arvelaiz, Yofre et al. (2012) Transcriptome analysis of a rotenone model of parkinsonism reveals complex I-tied and -untied toxicity mechanisms common to neurodegenerative diseases.; PLoS One, 7: e44700 |
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GSE35642 |
| Cabili, Moran N et al. (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.; Genes Dev, 25: 1915-27 |
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GSE30554 |
| Cabrera, Robert M et al. (2012) Transcriptional analyses of two mouse models of spina bifida.; Birth Defects Res A Clin Mol Teratol, 94: 782-9 |
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GSE25974 GSE25975 |
| Cabrera, Susanne M et al. (2022) Probiotic normalization of systemic inflammation in siblings of type 1 diabetes patients: an open-label pilot study.; Sci Rep, 12: 3306 |
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GSE162622 |
| Cabrera-Mendoza, Brenda et al. (2019) Brain Gene Expression Profiling of Individuals With Dual Diagnosis Who Died by Suicide.; J Dual Diagn, [no vol.]: 1-14 |
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GSE125681 |
| Cabrera-Reyes, Erika Alejandra et al. (2019) Transcriptomic analysis reveals new hippocampal gene networks induced by prolactin.; Sci Rep, 9: 13765 |
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GSE119435 |
| Cacheaux, Luisa P et al. (2009) Transcriptome profiling reveals TGF-beta signaling involvement in epileptogenesis.; J Neurosci, 29: 8927-35 |
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GSE12304 |
| Cadet, Jean Lud et al. (2009) Methamphetamine preconditioning alters midbrain transcriptional responses to methamphetamine-induced injury in the rat striatum.; PLoS One, 4: e7812 |
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GSE17665 |
| Cadet, Jean Lud et al. (2010) Methamphetamine-induced dopamine-independent alterations in striatal gene expression in the 6-hydroxydopamine hemiparkinsonian rats.; PLoS One, 5: e15643 |
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GSE24233 |
| Cadet, Jean Lud et al. (2014) Enhanced upregulation of CRH mRNA expression in the nucleus accumbens of male rats after a second injection of methamphetamine given thirty days later.; PLoS One, 9: e84665 |
|
GSE46717 |
| Caesar, Robert et al. (2015) Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling.; Cell Metab, 22: 658-68 |
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GSE70922 |
| Caesar, Robert et al. (2016) Interaction between dietary lipids and gut microbiota regulates hepatic cholesterol metabolism.; J Lipid Res, 57: 474-81 |
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GSE73195 |
| Caescu, Cristina I et al. (2015) Colony stimulating factor-1 receptor signaling networks inhibit mouse macrophage inflammatory responses by induction of microRNA-21.; Blood, 125: e1-13 |
|
GSE62630 |
| Caescu, Cristina I et al. (2021) Inhibition of HIPK2 Alleviates Thoracic Aortic Disease in Mice With Progressively Severe Marfan Syndrome.; Arterioscler Thromb Vasc Biol, 41: 2483-2493 |
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GSE145903.2 GSE145903.1 |
| Caetano-Anollés, Kelsey et al. (2015) Synergistic and antagonistic interplay between myostatin gene expression and physical activity levels on gene expression patterns in triceps Brachii muscles of C57/BL6 mice.; PLoS One, 10: e0116828 |
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GSE31839 |
| Caetano-Anollés, Kelsey et al. (2016) Cerebellum Transcriptome of Mice Bred for High Voluntary Activity Offers Insights into Locomotor Control and Reward-Dependent Behaviors.; PLoS One, 11: e0167095 |
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GSE84208 |
| Caffrey, Daniel R et al. (2011) siRNA off-target effects can be reduced at concentrations that match their individual potency.; PLoS One, 6: e21503 |
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GSE28786.2 GSE28786.1 |
| Caglayan, Safak et al. (2020) Optic Atrophy 1 Controls Human Neuronal Development by Preventing Aberrant Nuclear DNA Methylation.; iScience, 23: 101154 |
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GSE117976 |
| Cahoy, John D et al. (2008) A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function.; J Neurosci, 28: 264-78 |
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GSE9566 |
| Cai, Anxiang et al. (2023) Dapagliflozin alleviates renal inflammation and protects against diabetic kidney diseases, both dependent and independent of blood glucose levels.; Front Immunol, 14: 1205834 |
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GSE246576 |
| Cai, Changmeng et al. (2013) ERG induces androgen receptor-mediated regulation of SOX9 in prostate cancer.; J Clin Invest, 123: 1109-22 |
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GSE32269 |
| Cai, Hui et al. (2012) Effects of aging and anatomic location on gene expression in human retina.; Front Aging Neurosci, 4: 8 |
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GSE32614 |
| Cai, Jing et al. (2023) AMPK attenuates SHH subgroup medulloblastoma growth and metastasis by inhibiting NF-κB activation.; Cell Biosci, 13: 15 |
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GSE218076 |
| Cai, Jun et al. (2010) Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells.; PLoS Comput Biol, 6: e1000707 |
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GSE12550 |
| Cai, Junrong et al. (2024) The browning and mobilization of subcutaneous white adipose tissue supports efficient skin repair.; Cell Metab, 36: 1287-1301.e7 |
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GSE247964 |
| Cai, Menghua et al. (2019) Profiling the Gene Expression and DNA Methylation in the Mouse Brain after Ischemic Preconditioning.; Neuroscience, 406: 249-261 |
|
GSE122107 |
| Cai, Sa et al. [Unknown date]Directed Differentiation of Human Bone Marrow Stromal Cells to Fate-Committed Schwann Cells.; Stem Cell Reports, 9: 1097-1108 |
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GSE102049 |
| Cai, Sun-Li et al. (2022) SETD4 cells contribute to brain development and maintain adult stem cell reservoir for neurogenesis.; Stem Cell Reports, 17: 2081-2096 |
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GSE200159 |
| Cai, Ting et al. (2021) Deletion of RBMX RGG/RG motif in Shashi-XLID syndrome leads to aberrant p53 activation and neuronal differentiation defects.; Cell Rep, 36: 109337 |
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GSE156923 |
| Cai, Wei et al. (2022) Neuroprotection against ischemic stroke requires a specific class of early responder T cells in mice.; J Clin Invest, 132: [no pages] |
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GSE201054 |
| Cai, Weikang et al. (2021) Peripheral Insulin Regulates a Broad Network of Gene Expression in Hypothalamus, Hippocampus, and Nucleus Accumbens.; Diabetes, 70: 1857-1873 |
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GSE132352 |
| Cai, Weikang et al. [Unknown date]Domain-dependent effects of insulin and IGF-1 receptors on signalling and gene expression.; Nat Commun, 8: 14892 |
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GSE81921 |
| Cai, Wenjin et al. (2024) An Engineered Hierarchical Hydrogel with Immune Responsiveness and Targeted Mitochondrial Transfer to Augmented Bone Regeneration.; Adv Sci (Weinh), 11: e2406287 |
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GSE239590 |
| Cai, Xiongwei et al. (2015) Runx1 Deficiency Decreases Ribosome Biogenesis and Confers Stress Resistance to Hematopoietic Stem and Progenitor Cells.; Cell Stem Cell, 17: 165-77 |
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GSE67609 |
| Cai, Yi et al. (2014) Increased complement C1q level marks active disease in human tuberculosis.; PLoS One, 9: e92340 |
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GSE54992 |
| Cai, Yu-Wen et al. (2024) MAP3K1 mutations confer tumor immune heterogeneity in hormone receptor-positive HER2-negative breast cancer.; J Clin Invest, 135: [no pages] |
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GSE276527 |
| Cai, Yuanqing et al. (2024) The GDNF-gel/HA-Mg conduit promotes the repair of peripheral nerve defects by regulating PPAR-γ/RhoA/ROCK signaling pathway.; iScience, 27: 108969 |
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GSE243282 |
| Caiazzo, Massimiliano et al. (2011) Direct generation of functional dopaminergic neurons from mouse and human fibroblasts.; Nature, [no vol.]: [no pages] |
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GSE27174 |
| Caiazzo, Massimiliano et al. (2015) Direct conversion of fibroblasts into functional astrocytes by defined transcription factors.; Stem Cell Reports, 4: 25-36 |
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GSE59018 |
| Caimari, Antoni et al. (2010) Peripheral blood mononuclear cells as a model to study the response of energy homeostasis-related genes to acute changes in feeding conditions.; OMICS, 14: 129-41 |
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GSE14497 |
| Cain, Jacob T et al. (2014) Shifts in the vascular endothelial growth factor isoforms result in transcriptome changes correlated with early neural stem cell proliferation and differentiation in mouse forebrain.; Dev Neurobiol, 74: 63-81 |
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GSE52542 |
| Caires-Júnior, Luiz Carlos et al. (2018) Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells.; Nat Commun, 9: 475 |
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GSE102128 |
| Cajigas, Ivelisse et al. [Unknown date]The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain.; Mol Cell, 71: 956-972.e9 |
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GSE102089 |
| Calabretta, Sara et al. [Unknown date]Loss of PRMT5 Promotes PDGFR? Degradation during Oligodendrocyte Differentiation and Myelination.; Dev Cell, 46: 426-440.e5 |
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GSE116242 |
| Calafate, Sara et al. (2023) Early alterations in the MCH system link aberrant neuronal activity and sleep disturbances in a mouse model of Alzheimer's disease.; Nat Neurosci, 26: 1021-1031 |
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GSE225181 |
| Calarco, John A et al. (2009) Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein.; Cell, 138: 898-910 |
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GSE16187 |
| Calder, Jack et al. (2021) Resistance to BET inhibitors in lung adenocarcinoma is mediated by casein kinase phosphorylation of BRD4.; Oncogenesis, 10: 27 |
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GSE164813 |
| Calderon, Boris et al. (2011) Entry of diabetogenic T cells into islets induces changes that lead to amplification of the cellular response.; Proc Natl Acad Sci U S A, 108: 1567-72 |
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GSE26147 |
| Calderon, Lesly et al. (2022) Cohesin-dependence of neuronal gene expression relates to chromatin loop length.; Elife, 11: [no pages] |
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GSE172427 GSE172425 |
| Calderon-Gonzalez, Ricardo et al. (2017) GNP-GAPDH1-22nanovaccines prevent neonatal listeriosis by blocking microglial apoptosis and bacterial dissemination.; Oncotarget, 8: 53916-53934 |
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GSE32505 |
| Calderón, Lesly et al. (2012) Synergistic, context-dependent, and hierarchical functions of epithelial components in thymic microenvironments.; Cell, 149: 159-72 |
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GSE33268 |
| Caldi Gomes, Lucas et al. (2024) Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target.; Nat Commun, 15: 4893 |
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GSE234245 |
| Caldwell, Alison L M et al. (2022) Aberrant astrocyte protein secretion contributes to altered neuronal development in multiple models of neurodevelopmental disorders.; Nat Neurosci, 25: 1163-1178 |
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GSE139285 |
| Caldwell, Andrew B et al. (2020) Dedifferentiation and neuronal repression define familial Alzheimer's disease.; Sci Adv, 6: [no pages] |
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GSE123891 |
| Caldwell, Andrew B et al. (2022) Endotype reversal as a novel strategy for screening drugs targeting familial Alzheimer's disease.; Alzheimers Dement, [no vol.]: [no pages] |
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GSE95673 |
| Caldwell, Andrew B et al. (2022) Transcriptomic profiling of sporadic Alzheimer's disease patients.; Mol Brain, 15: 83 |
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GSE203206 |
| Calero-Nieto, Fernando J et al. (2014) Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.; EMBO J, 33: 1212-26 |
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GSE47988 |
| Cali, Christopher P et al. (2019) C9orf72 intermediate repeats are associated with corticobasal degeneration, increased C9orf72 expression and disruption of autophagy.; Acta Neuropathol, 138: 795-811 |
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GSE133323 |
| Caliskan, Minal et al. (2011) The effects of EBV transformation on gene expression levels and methylation profiles.; Hum Mol Genet, 20: 1643-52 |
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GSE26210 |
| Callari, Maurizio et al. (2014) Subtype-dependent prognostic relevance of an interferon-induced pathway metagene in node-negative breast cancer.; Mol Oncol, 8: 1278-89 |
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GSE37181 |
| Callejas, Blanca E et al. (2025) Calcitonin gene-related peptide promotes epithelial reparative and anticolitic functions of IL-4 educated human macrophages.; Am J Physiol Gastrointest Liver Physiol, 328: G1-G16 |
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GSE242543 |
| Calligaris, Raffaella et al. (2009) A transcriptome analysis identifies molecular effectors of unconjugated bilirubin in human neuroblastoma SH-SY5Y cells.; BMC Genomics, 10: 543 |
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GSE16768 |
| Calligaris, Raffaella et al. (2015) Blood transcriptomics of drug-naïve sporadic Parkinson's disease patients.; BMC Genomics, 16: 876 |
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GSE72267 |
| Calvet, Loreley et al. (2022) YAP1 is essential for malignant mesothelioma tumor maintenance.; BMC Cancer, 22: 639 |
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GSE196714 GSE196691 GSE196672 |
| Calvo, Ezequiel et al. (2012) Specific transcriptional response of four blockers of estrogen receptors on estradiol-modulated genes in the mouse mammary gland.; Breast Cancer Res Treat, 134: 625-47 |
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GSE35206 |
| Calvo, Julia et al. (2013) Infrequent loss of luminal differentiation in ductal breast cancer metastasis.; PLoS One, 8: e78097 |
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GSE44408 |
| Calvo, Sarah et al. (2006) Systematic identification of human mitochondrial disease genes through integrative genomics.; Nat Genet, 38: 576-82 |
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GSE4330 |
| Calvo-Garrido, Javier et al. [Unknown date]SQSTM1/p62-Directed Metabolic Reprogramming Is Essential for Normal Neurodifferentiation.; Stem Cell Reports, 12: 696-711 |
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GSE99559 |
| Calyjur, Priscila Clara et al. (2016) The mdx Mutation in the 129/Sv Background Results in a Milder Phenotype: Transcriptome Comparative Analysis Searching for the Protective Factors.; PLoS One, 11: e0150748 |
|
GSE77126 |
| Calzari, Luciano et al. (2020) Transcriptome Analysis of iPSC-Derived Neurons from Rubinstein-Taybi Patients Reveals Deficits in Neuronal Differentiation.; Mol Neurobiol, 57: 3685-3701 |
|
GSE135287 |
| Camarena, Vladimir et al. (2017) cAMP signaling regulates DNA hydroxymethylation by augmenting the intracellular labile ferrous iron pool.; Elife, 6: [no pages] |
|
GSE101153 |
| Camargo Moreno, Maria et al. (2017) Heterogeneity of p53 dependent genomic responses following ethanol exposure in a developmental mouse model of fetal alcohol spectrum disorder.; PLoS One, 12: e0180873 |
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GSE100217 |
| Camateros, Pierre et al. (2009) Modulation of the allergic asthma transcriptome following resiquimod treatment.; Physiol Genomics, 38: 303-18 |
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GSE13032 |
| Cameron, Alanna M et al. (2019) Inflammatory macrophage dependence on NAD+salvage is a consequence of reactive oxygen species-mediated DNA damage.; Nat Immunol, 20: 420-432 |
|
GSE123596 |
| Cameron, Darren et al. (2019) Transcriptional Changes following Cellular Knockdown of the Schizophrenia Risk GeneSETD1AAre Enriched for Common Variant Association with the Disorder.; Mol Neuropsychiatry, 5: 109-114 |
|
GSE118941 |
| Cameron, Donald P et al. (2023) Coinhibition of topoisomerase 1 and BRD4-mediated pause release selectively kills pancreatic cancer via readthrough transcription.; Sci Adv, 9: eadg5109 |
|
GSE211468 |
| Cameron, Evan G et al. (2024) A molecular switch for neuroprotective astrocyte reactivity.; Nature, 626: 574-582 |
|
GSE245816 |
| Camiña-Tato, Montse et al. (2010) Gender-associated differences of perforin polymorphisms in the susceptibility to multiple sclerosis.; J Immunol, 185: 5392-404 |
|
GSE23205 |
| Cammaerts, Sophia et al. (2015) Schizophrenia-Associated MIR204 Regulates Noncoding RNAs and Affects Neurotransmitter and Ion Channel Gene Sets.; PLoS One, 10: e0144428 |
|
GSE69675 |
| Campbell, Amy E et al. (2013) Analysis of disease-causing GATA1 mutations in murine gene complementation systems.; Blood, 121: 5218-27 |
|
GSE43356 |
| Campbell, Amy E et al. (2023) Compromised nonsense-mediated RNA decay results in truncated RNA-binding protein production upon DUX4 expression.; Cell Rep, 42: 112642 |
|
GSE178759 |
| Campbell, Aoife et al. (2022) AntimiR targeting of microRNA-134 reduces seizures in a mouse model of Angelman syndrome.; Mol Ther Nucleic Acids, 28: 514-529 |
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GSE199276 |
| Campbell, Eric L et al. (2014) Transmigrating neutrophils shape the mucosal microenvironment through localized oxygen depletion to influence resolution of inflammation.; Immunity, 40: 66-77 |
|
GSE39681 |
| Campbell, Gordon R O et al. (2011) Transcription factors expressed in olfactory bulb local progenitor cells revealed by genome-wide transcriptome profiling.; Mol Cell Neurosci, 46: 548-61 |
|
GSE26406 |
| Cáceres, Mario et al. (2003) Elevated gene expression levels distinguish human from non-human primate brains.; Proc Natl Acad Sci U S A, 100: 13030-5 |
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GSE7540.1 |
| Cáceres-Gutiérrez, Rodrigo E et al. (2021) Proteasome inhibition alters mitotic progression through the upregulation of centromeric α-Satellite RNAs.; FEBS J, [no vol.]: [no pages] |
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GSE165325 |
| Çakan, Elif et al. (2023) TLR9 ligand sequestration by chemokine CXCL4 negatively affects central B cell tolerance.; J Exp Med, 220: [no pages] |
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GSE227639 |
| Çakır, Işın et al. (2022) Sulforaphane reduces obesity by reversing leptin resistance.; Elife, 11: [no pages] |
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GSE181477 |