List of all 17,751 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Browne, E P et al. (2001) Altered cellular mRNA levels in human cytomegalovirus-infected fibroblasts: viral block to the accumulation of antiviral mRNAs.; J Virol, 75: 12319-30 |
|
GSE675 |
| Brownell, Isaac et al. (2011) Nerve-derived sonic hedgehog defines a niche for hair follicle stem cells capable of becoming epidermal stem cells.; Cell Stem Cell, 8: 552-65 |
|
GSE28108 |
| Browning, Rebekah L et al. (2016) Lenalidomide Induces Interleukin-21 Production by T Cells and Enhances IL21-Mediated Cytotoxicity in Chronic Lymphocytic Leukemia B Cells.; Cancer Immunol Res, 4: 698-707 |
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GSE79660 |
| Brownjohn, Philip W et al. (2018) Functional Studies of Missense TREM2 Mutations in Human Stem Cell-Derived Microglia.; Stem Cell Reports, 10: 1294-1307 |
|
GSE110952 |
| Brownstein, Bernard H et al. (2006) Commonality and differences in leukocyte gene expression patterns among three models of inflammation and injury.; Physiol Genomics, 24: 298-309 |
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GSE2278 |
| Broyl, Annemiek et al. (2010) Gene expression profiling for molecular classification of multiple myeloma in newly diagnosed patients.; Blood, 116: 2543-53 |
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GSE19784 |
| Broz, Miranda L et al. (2014) Dissecting the tumor myeloid compartment reveals rare activating antigen-presenting cells critical for T cell immunity.; Cancer Cell, 26: 638-52 |
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GSE61462 |
| Brozzi, Flora et al. (2024) tRNA-derived fragments in T lymphocyte-beta cell crosstalk and in type 1 diabetes pathogenesis in NOD mice.; Diabetologia, 67: 2260-2274 |
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GSE242561 |
| Bruch-Oms, Marina et al. (2023) Analyzing the role of cancer-associated fibroblast activation on macrophage polarization.; Mol Oncol, 17: 1492-1513 |
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GSE206404 |
| Brucklacher, Robert M et al. (2008) Whole genome assessment of the retinal response to diabetes reveals a progressive neurovascular inflammatory response.; BMC Med Genomics, 1: 26 |
|
GSE11733 |
| Bruedigam, Claudia et al. (2023) Gene Expression Analyses in Models of Rosiglitazone-Induced Physiological and Pathological Mineralization Identify Novel Targets to Improve Bone and Vascular Health.; Cells, 12: [no pages] |
|
GSE67518 |
| Bruhn, Sören et al. (2014) A generally applicable translational strategy identifies S100A4 as a candidate gene in allergy.; Sci Transl Med, 6: 218ra4 |
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GSE46333 |
| Brun, Yseult F et al. (2008) Simultaneous modeling of concentration-effect and time-course patterns in gene expression data from microarrays.; Cancer Genomics Proteomics, 5: 43-53 |
|
GSE8057 |
| Brune, Verena et al. (2008) Origin and pathogenesis of nodular lymphocyte-predominant Hodgkin lymphoma as revealed by global gene expression analysis.; J Exp Med, 205: 2251-68 |
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GSE12453 |
| Brunner, Alayne L et al. (2014) A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions.; Genome Biol, 15: R71 |
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GSE47462 |
| Bruno, Gennaro et al. (2023) β3-adrenergic receptor on tumor-infiltrating lymphocytes sustains IFN-γ-dependent PD-L1 expression and impairs anti-tumor immunity in neuroblastoma.; Cancer Gene Ther, 30: 890-904 |
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GSE209634 |
| Bruno, Ivone G et al. (2011) Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay.; Mol Cell, 42: 500-10 |
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GSE28889 |
| Bruns, I et al. (2009) The hematopoietic stem cell in chronic phase CML is characterized by a transcriptional profile resembling normal myeloid progenitor cells and reflecting loss of quiescence.; Leukemia, 23: 892-9 |
|
GSE11889 |
| Bruns, Ingmar et al. (2012) Multiple myeloma-related deregulation of bone marrow-derived CD34(+) hematopoietic stem and progenitor cells.; Blood, 120: 2620-30 |
|
GSE24870 |
| Brunskill, Eric W et al. (2011) Defining the molecular character of the developing and adult kidney podocyte.; PLoS One, 6: e24640 |
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GSE17218 |
| Brunskill, Eric W et al. (2014) A gene expression atlas of early craniofacial development.; Dev Biol, 391: 133-46 |
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GSE55966 GSE55964 |
| Brunskill, Eric W et al. (2014) Single cell dissection of early kidney development: multilineage priming.; Development, 141: 3093-101 |
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GSE64959 |
| Bruttger, Julia et al. (2015) Genetic Cell Ablation Reveals Clusters of Local Self-Renewing Microglia in the Mammalian Central Nervous System.; Immunity, 43: 92-106 |
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GSE68376 |
| Bruveris, Freya F et al. (2020) Human yolk sac-like haematopoiesis generatesRUNX1-,GFI1-and/orGFI1B-dependent blood andSOX17-positive endothelium.; Development, 147: [no pages] |
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GSE124084 |
| Bryant, C D et al. (2012) Congenic dissection of a major QTL for methamphetamine sensitivity implicates epistasis.; Genes Brain Behav, 11: 623-32 |
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GSE35139 |
| Bryant, Camron D et al. (2019) C57BL/6 substrain differences in inflammatory and neuropathic nociception and genetic mapping of a major quantitative trait locus underlying acute thermal nociception.; Mol Pain, 15: 1744806918825046 |
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GSE119719 |
| Bryant, Carson J et al. (2024) Discovery of novel microRNA mimic repressors of ribosome biogenesis.; Nucleic Acids Res, 52: 1988-2011 |
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GSE242754 |
| Bryce-Smith, Sam et al. (2024) TDP-43 loss induces extensive cryptic polyadenylation in ALS/FTD.; bioRxiv, [no vol.]: [no pages] |
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GSE296710 GSE296712 GSE296711 GSE296714 GSE296713 |
| Brykczynska, Urszula et al. (2020) Distinct Transcriptional Responses across Tissue-Resident Macrophages to Short-Term and Long-Term Metabolic Challenge.; Cell Rep, 30: 1627-1643.e7 |
|
GSE133127 |
| Brylka, Laura J et al. (2017) Post-weaning epiphysiolysis causes distal femur dysplasia and foreshortened hindlimbs in fetuin-A-deficient mice.; PLoS One, 12: e0187030 |
|
GSE105139 |
| Brüstle, Anne et al. (2012) The NF-?B regulator MALT1 determines the encephalitogenic potential of Th17 cells.; J Clin Invest, 122: 4698-709 |
|
GSE40931 |
| Bu, Dawei et al. (2013) Identification of breast cancer DNA methylation markers optimized for fine-needle aspiration samples.; Cancer Epidemiol Biomarkers Prev, 22: 2212-21 |
|
GSE41692 |
| Bubak, Andrew N et al. (2022) Targeted RNA Sequencing of VZV-Infected Brain Vascular Adventitial Fibroblasts Indicates That Amyloid May Be Involved in VZV Vasculopathy.; Neurol Neuroimmunol Neuroinflamm, 9: [no pages] |
|
GSE175797 |
| Bucasas, Kristine L et al. (2011) Early patterns of gene expression correlate with the humoral immune response to influenza vaccination in humans.; J Infect Dis, 203: 921-9 |
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GSE48023 |
| Buchacher, Tanja et al. (2023) PIM kinases regulate early human Th17 cell differentiation.; Cell Rep, 42: 113469 |
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GSE231650 |
| Bucher, Philip et al. (2020) Targeting chronic NFAT activation with calcineurin inhibitors in diffuse large B-cell lymphoma.; Blood, 135: 121-132 |
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GSE140882 |
| Buchholz, David E et al. (2020) Novel genetic features of human and mouse Purkinje cell differentiation defined by comparative transcriptomics.; Proc Natl Acad Sci U S A, 117: 15085-15095 |
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GSE140299 GSE140306 |
| Buchner, David A et al. (2015) Zinc finger protein 407 (ZFP407) regulates insulin-stimulated glucose uptake and glucose transporter 4 (Glut4) mRNA.; J Biol Chem, 290: 6376-86 |
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GSE64757 |
| Buchstaller, Johanna et al. (2004) Efficient isolation and gene expression profiling of small numbers of neural crest stem cells and developing Schwann cells.; J Neurosci, 24: 2357-65 |
|
GSE972 |
| Buchwalter, Gilles et al. (2013) PDEF promotes luminal differentiation and acts as a survival factor for ER-positive breast cancer cells.; Cancer Cell, 23: 753-67 |
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GSE40985 GSE40986 |
| Buckberry, Sam et al. (2017) Placental transcriptome co-expression analysis reveals conserved regulatory programs across gestation.; BMC Genomics, 18: 10 |
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GSE77085 |
| Buckle, Adam et al. (2018) Polymer Simulations of Heteromorphic Chromatin Predict the 3D Folding of Complex Genomic Loci.; Mol Cell, 72: 786-797.e11 |
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GSE119660 |
| Buckley, Shannon M et al. (2012) Regulation of pluripotency and cellular reprogramming by the ubiquitin-proteasome system.; Cell Stem Cell, 11: 783-98 |
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GSE39772 |
| Budczies, Jan et al. (2011) Genome-wide gene expression profiling of formalin-fixed paraffin-embedded breast cancer core biopsies using microarrays.; J Histochem Cytochem, 59: 146-57 |
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GSE11001 |
| Buechel, Heather M et al. (2011) Deep sleep and parietal cortex gene expression changes are related to cognitive deficits with age.; PLoS One, 6: e18387 |
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GSE24515 |
| Buecker, Christa et al. (2014) Reorganization of enhancer patterns in transition from naive to primed pluripotency.; Cell Stem Cell, 14: 838-53 |
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GSE56096 |
| Buettner, Victoria L et al. (2005) Novel paternally expressed intergenic transcripts at the mouse Prader-Willi/Angelman Syndrome locus.; Mamm Genome, 16: 219-27 |
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GSE12230 GSE12227 |
| Buga, Ana Maria et al. (2014) Transcriptomics of post-stroke angiogenesis in the aged brain.; Front Aging Neurosci, 6: 44 |
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GSE55260 |
| Buganim, Yosef et al. (2014) The developmental potential of iPSCs is greatly influenced by reprogramming factor selection.; Cell Stem Cell, 15: 295-309 |
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GSE45173 |
| Bugge, Anne et al. (2009) The PPARgamma2 A/B-domain plays a gene-specific role in transactivation and cofactor recruitment.; Mol Endocrinol, 23: 794-808 |
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GSE15433 |
| Buggele, William A et al. (2013) MicroRNA profiling of Sendai virus-infected A549 cells identifies miR-203 as an interferon-inducible regulator of IFIT1/ISG56.; J Virol, [no vol.]: [no pages] |
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GSE47866 GSE47865 |
| Buick, Julie K et al. (2015) Integration of metabolic activation with a predictive toxicogenomics signature to classify genotoxic versus nongenotoxic chemicals in human TK6 cells.; Environ Mol Mutagen, 56: 520-34 |
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GSE68855 |
| Buick, Julie K et al. (2022) Integrated Genotoxicity Testing of three anti-infective drugs using the TGx-DDI transcriptomic biomarker and high-throughput CometChip®assay in TK6 cells.; Front Toxicol, 4: 991590 |
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GSE196372 |
| Bujor, Andreea M et al. (2020) Fli1 Downregulation in Scleroderma Myeloid Cells Has Profibrotic and Proinflammatory Effects.; Front Immunol, 11: 800 |
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GSE144625 |
| Bukowski, Radek et al. (2017) Onset of human preterm and term birth is related to unique inflammatory transcriptome profiles at the maternal fetal interface.; PeerJ, 5: e3685 |
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GSE73685 |
| Bulajić, Milica et al. (2020) Differential abilities to engage inaccessible chromatin diversify vertebrate Hox binding patterns.; Development, 147: [no pages] |
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GSE142378 |
| Bull, Daniel et al. (2024) The hypermorphic PLCγ2 S707Y variant dysregulates microglial cell function - Insight into PLCγ2 activation in brain health and disease, and opportunities for therapeutic modulation.; Biochim Biophys Acta Mol Basis Dis, 1870: 166978 |
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GSE227513 |
| Bull, Todd M et al. (2004) Gene microarray analysis of peripheral blood cells in pulmonary arterial hypertension.; Am J Respir Crit Care Med, 170: 911-9 |
|
GSE703 |
| Bullert, Amanda J et al. (2024) Effects of 28-day nose-only inhalation of PCB52 (2,2',5,5'-Tetrachlorobiphenyl) on the brain transcriptome.; Toxicology, 509: 153965 |
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GSE246555 |
| Bullert, Amanda J et al. (2024) Interactions of Polychlorinated Biphenyls and Their Metabolites with the Brain and Liver Transcriptome of Female Mice.; ACS Chem Neurosci, 15: 3991-4009 |
|
GSE252621 |
| Bundy, Joseph L et al. (2017) Sex differences in the molecular signature of the developing mouse hippocampus.; BMC Genomics, 18: 237 |
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GSE83931 |
| Bundy, Joseph L et al. (2019) Sex-biased hippocampal pathology in the 5XFAD mouse model of Alzheimer's disease: A multi-omic analysis.; J Comp Neurol, 527: 462-475 |
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GSE97113 |
| Bunt, Jens et al. (2012) OTX2 directly activates cell cycle genes and inhibits differentiation in medulloblastoma cells.; Int J Cancer, 131: E21-32 |
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GSE22875 |
| Buqué, Aitziber et al. (2020) Immunoprophylactic and immunotherapeutic control of hormone receptor-positive breast cancer.; Nat Commun, 11: 3819 |
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GSE151197 GSE150966 GSE150967 |
| Burban, Audrey et al. (2024) Targeting glioblastoma with a brain-penetrant drug that impairs brain tumor stem cells via NLE1-Notch1 complex.; Stem Cell Reports, 19: 1534-1547 |
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GSE261132 |
| Burban, Audrey et al. (2025) Exploiting metabolic vulnerability in glioblastoma using a brain-penetrant drug with a safe profile.; EMBO Mol Med, 17: 469-503 |
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GSE284766 |
| Burczynski, Michael E et al. (2006) Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells.; J Mol Diagn, 8: 51-61 |
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GSE3365 |
| Burda, Joshua E et al. (2022) Divergent transcriptional regulation of astrocyte reactivity across disorders.; Nature, [no vol.]: [no pages] |
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GSE199149 |
| Burdach, Stefan et al. (2009) Epigenetic maintenance of stemness and malignancy in peripheral neuroectodermal tumors by EZH2.; Cell Cycle, 8: 1991-6 |
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GSE15890 |
| Burga, Laura N et al. (2009) Altered proliferation and differentiation properties of primary mammary epithelial cells from BRCA1 mutation carriers.; Cancer Res, 69: 1273-8 |
|
GSE13671 |
| Burger, Corinna et al. (2007) Changes in transcription within the CA1 field of the hippocampus are associated with age-related spatial learning impairments.; Neurobiol Learn Mem, 87: 21-41 |
|
GSE3531 |
| Burger, Corinna et al. (2008) Genome-wide analysis of aging and learning-related genes in the hippocampal dentate gyrus.; Neurobiol Learn Mem, 89: 379-96 |
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GSE4821 |
| Burger, Jan A et al. (2009) High-level expression of the T-cell chemokines CCL3 and CCL4 by chronic lymphocytic leukemia B cells in nurselike cell cocultures and after BCR stimulation.; Blood, 113: 3050-8 |
|
GSE13811 |
| Burger, Laura L et al. (2018) Identification of Genes Enriched in GnRH Neurons by Translating Ribosome Affinity Purification and RNAseq in Mice.; Endocrinology, 159: 1922-1940 |
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GSE110042 |
| Burgess-Herbert, Sarah L et al. (2008) Practical applications of the bioinformatics toolbox for narrowing quantitative trait loci.; Genetics, 180: 2227-35 |
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GSE10493 |
| Burington, Bart et al. (2008) Tumor cell gene expression changes following short-term in vivo exposure to single agent chemotherapeutics are related to survival in multiple myeloma.; Clin Cancer Res, 14: 4821-9 |
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GSE8546 |
| Burington, Bart et al. (2011) CD40 pathway activation status predicts response to CD40 therapy in diffuse large B cell lymphoma.; Sci Transl Med, 3: 74ra22 |
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GSE18377 GSE18376 |
| Burleigh, Annika et al. (2012) Joint immobilization prevents murine osteoarthritis and reveals the highly mechanosensitive nature of protease expression in vivo.; Arthritis Rheum, 64: 2278-88 |
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GSE26475 |
| Burmeister, Amanda R et al. (2022) Maternal Herpesviridae infection during pregnancy alters midbrain dopaminergic signatures in adult offspring.; Neurobiol Dis, 169: 105720 |
|
GSE162566 |
| Burnett, Lisa C et al. (2017) Deficiency in prohormone convertase PC1 impairs prohormone processing in Prader-Willi syndrome.; J Clin Invest, 127: 293-305 |
|
GSE89991 |
| Burnett, Ryan et al. (2006) DNA sequence-specific polyamides alleviate transcription inhibition associated with long GAA.TTC repeats in Friedreich's ataxia.; Proc Natl Acad Sci U S A, 103: 11497-502 |
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GSE5040 |
| Burney, Matthew J et al. (2013) An epigenetic signature of developmental potential in neural stem cells and early neurons.; Stem Cells, 31: 1868-80 |
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GSE46791 |
| Burney, Richard O et al. (2007) Gene expression analysis of endometrium reveals progesterone resistance and candidate susceptibility genes in women with endometriosis.; Endocrinology, [no vol.]: [no pages] |
|
GSE6364 |
| Burns, Allison M et al. (2022) The HDAC inhibitor CI-994 acts as a molecular memory aid by facilitating synaptic and intracellular communication after learning.; Proc Natl Acad Sci U S A, 119: e2116797119 |
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GSE185454 GSE185453 |
| Burns, Fredric J et al. (2002) The action of a dietary retinoid on gene expression and cancer induction in electron-irradiated rat skin.; J Radiat Res, 43 Suppl: S229-32 |
|
GSE284 |
| Buroker, Norman E et al. (2007) The dominant negative thyroid hormone receptor beta-mutant {Delta}337T alters PPAR{alpha} signaling in heart.; Am J Physiol Endocrinol Metab, 292: E453-60 |
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GSE3067 |
| Bünger, Meike et al. (2007) Genome-wide analysis of PPARalpha activation in murine small intestine.; Physiol Genomics, [no vol.]: [no pages] |
|
GSE5475 |