List of all 16,750 published papers with data in Gemma:

To search for a paper or experiment and see more details, visit the annotated paper search page.

Byles, Vanessa et al. (2021) Hepatic mTORC1 signaling activates ATF4 as part of its metabolic response to feeding and insulin.; Mol Metab, 53: 101309 PubMed link GSE173578  
Byrnes, Amy E et al. (2023) Lipid nanoparticle delivery limits antisense oligonucleotide activity and cellular distribution in the brain after intracerebroventricular injection.; Mol Ther Nucleic Acids, 32: 773-793 PubMed link GSE220777  
Byrnes, Andrea et al. (2009) Gene expression in peripheral blood leukocytes in monozygotic twins discordant for chronic fatigue: no evidence of a biomarker.; PLoS One, 4: e5805 PubMed link GSE16059  
Bystrykh, Leonid et al. (2005) Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.; Nat Genet, 37: 225-32 PubMed link GSE2031  
Bøgsted, Martin et al. (2013) Proof of the concept to use a malignant B cell line drug screen strategy for identification and weight of melphalan resistance genes in multiple myeloma.; PLoS One, 8: e83252 PubMed link GSE22759  
Caba, Octavio et al. (2014) Transcriptional profiling of peripheral blood in pancreatic adenocarcinoma patients identifies diagnostic biomarkers.; Dig Dis Sci, 59: 2714-20 PubMed link GSE49641  
Cabeza-Arvelaiz, Yofre et al. (2012) Transcriptome analysis of a rotenone model of parkinsonism reveals complex I-tied and -untied toxicity mechanisms common to neurodegenerative diseases.; PLoS One, 7: e44700 PubMed link GSE35642  
Cabili, Moran N et al. (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.; Genes Dev, 25: 1915-27 PubMed link GSE30554  
Cabrera, Robert M et al. (2012) Transcriptional analyses of two mouse models of spina bifida.; Birth Defects Res A Clin Mol Teratol, 94: 782-9 PubMed link GSE25974   GSE25975  
Cabrera, Susanne M et al. (2022) Probiotic normalization of systemic inflammation in siblings of type 1 diabetes patients: an open-label pilot study.; Sci Rep, 12: 3306 PubMed link GSE162622  
Cabrera-Mendoza, Brenda et al. (2019) Brain Gene Expression Profiling of Individuals With Dual Diagnosis Who Died by Suicide.; J Dual Diagn, [no vol.]: 1-14 PubMed link GSE125681  
Cabrera-Reyes, Erika Alejandra et al. (2019) Transcriptomic analysis reveals new hippocampal gene networks induced by prolactin.; Sci Rep, 9: 13765 PubMed link GSE119435  
Cacheaux, Luisa P et al. (2009) Transcriptome profiling reveals TGF-beta signaling involvement in epileptogenesis.; J Neurosci, 29: 8927-35 PubMed link GSE12304  
Cadet, Jean Lud et al. (2009) Methamphetamine preconditioning alters midbrain transcriptional responses to methamphetamine-induced injury in the rat striatum.; PLoS One, 4: e7812 PubMed link GSE17665  
Cadet, Jean Lud et al. (2010) Methamphetamine-induced dopamine-independent alterations in striatal gene expression in the 6-hydroxydopamine hemiparkinsonian rats.; PLoS One, 5: e15643 PubMed link GSE24233  
Cadet, Jean Lud et al. (2014) Enhanced upregulation of CRH mRNA expression in the nucleus accumbens of male rats after a second injection of methamphetamine given thirty days later.; PLoS One, 9: e84665 PubMed link GSE46717  
Caesar, Robert et al. (2015) Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling.; Cell Metab, 22: 658-68 PubMed link GSE70922  
Caesar, Robert et al. (2016) Interaction between dietary lipids and gut microbiota regulates hepatic cholesterol metabolism.; J Lipid Res, 57: 474-81 PubMed link GSE73195  
Caescu, Cristina I et al. (2015) Colony stimulating factor-1 receptor signaling networks inhibit mouse macrophage inflammatory responses by induction of microRNA-21.; Blood, 125: e1-13 PubMed link GSE62630  
Caescu, Cristina I et al. (2021) Inhibition of HIPK2 Alleviates Thoracic Aortic Disease in Mice With Progressively Severe Marfan Syndrome.; Arterioscler Thromb Vasc Biol, 41: 2483-2493 PubMed link GSE145903.2   GSE145903.1  
Caetano-Anollés, Kelsey et al. (2015) Synergistic and antagonistic interplay between myostatin gene expression and physical activity levels on gene expression patterns in triceps Brachii muscles of C57/BL6 mice.; PLoS One, 10: e0116828 PubMed link GSE31839  
Caetano-Anollés, Kelsey et al. (2016) Cerebellum Transcriptome of Mice Bred for High Voluntary Activity Offers Insights into Locomotor Control and Reward-Dependent Behaviors.; PLoS One, 11: e0167095 PubMed link GSE84208  
Caffrey, Daniel R et al. (2011) siRNA off-target effects can be reduced at concentrations that match their individual potency.; PLoS One, 6: e21503 PubMed link GSE28786.2   GSE28786.1  
Caglayan, Safak et al. (2020) Optic Atrophy 1 Controls Human Neuronal Development by Preventing Aberrant Nuclear DNA Methylation.; iScience, 23: 101154 PubMed link GSE117976  
Cahoy, John D et al. (2008) A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function.; J Neurosci, 28: 264-78 PubMed link GSE9566  
Cai, Anxiang et al. (2023) Dapagliflozin alleviates renal inflammation and protects against diabetic kidney diseases, both dependent and independent of blood glucose levels.; Front Immunol, 14: 1205834 PubMed link GSE246576  
Cai, Changmeng et al. (2013) ERG induces androgen receptor-mediated regulation of SOX9 in prostate cancer.; J Clin Invest, 123: 1109-22 PubMed link GSE32269  
Cai, Hui et al. (2012) Effects of aging and anatomic location on gene expression in human retina.; Front Aging Neurosci, 4: 8 PubMed link GSE32614  
Cai, Jing et al. (2023) AMPK attenuates SHH subgroup medulloblastoma growth and metastasis by inhibiting NF-κB activation.; Cell Biosci, 13: 15 PubMed link GSE218076  
Cai, Jun et al. (2010) Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells.; PLoS Comput Biol, 6: e1000707 PubMed link GSE12550  
Cai, Junrong et al. (2024) The browning and mobilization of subcutaneous white adipose tissue supports efficient skin repair.; Cell Metab, 36: 1287-1301.e7 PubMed link GSE247964  
Cai, Menghua et al. (2019) Profiling the Gene Expression and DNA Methylation in the Mouse Brain after Ischemic Preconditioning.; Neuroscience, 406: 249-261 PubMed link GSE122107  
Cai, Sa et al. [Unknown date]Directed Differentiation of Human Bone Marrow Stromal Cells to Fate-Committed Schwann Cells.; Stem Cell Reports, 9: 1097-1108 PubMed link GSE102049  
Cai, Sun-Li et al. (2022) SETD4 cells contribute to brain development and maintain adult stem cell reservoir for neurogenesis.; Stem Cell Reports, 17: 2081-2096 PubMed link GSE200159  
Cai, Ting et al. (2021) Deletion of RBMX RGG/RG motif in Shashi-XLID syndrome leads to aberrant p53 activation and neuronal differentiation defects.; Cell Rep, 36: 109337 PubMed link GSE156923  
Cai, Wei et al. (2022) Neuroprotection against ischemic stroke requires a specific class of early responder T cells in mice.; J Clin Invest, 132: [no pages] PubMed link GSE201054  
Cai, Weikang et al. (2021) Peripheral Insulin Regulates a Broad Network of Gene Expression in Hypothalamus, Hippocampus, and Nucleus Accumbens.; Diabetes, 70: 1857-1873 PubMed link GSE132352  
Cai, Weikang et al. [Unknown date]Domain-dependent effects of insulin and IGF-1 receptors on signalling and gene expression.; Nat Commun, 8: 14892 PubMed link GSE81921  
Cai, Wenjin et al. (2024) An Engineered Hierarchical Hydrogel with Immune Responsiveness and Targeted Mitochondrial Transfer to Augmented Bone Regeneration.; Adv Sci (Weinh), 11: e2406287 PubMed link GSE239590  
Cai, Xiongwei et al. (2015) Runx1 Deficiency Decreases Ribosome Biogenesis and Confers Stress Resistance to Hematopoietic Stem and Progenitor Cells.; Cell Stem Cell, 17: 165-77 PubMed link GSE67609  
Cai, Yi et al. (2014) Increased complement C1q level marks active disease in human tuberculosis.; PLoS One, 9: e92340 PubMed link GSE54992  
Cai, Yu-Wen et al. (2024) MAP3K1 mutations confer tumor immune heterogeneity in hormone receptor-positive HER2-negative breast cancer.; J Clin Invest, 135: [no pages] PubMed link GSE276527  
Cai, Yuanqing et al. (2024) The GDNF-gel/HA-Mg conduit promotes the repair of peripheral nerve defects by regulating PPAR-γ/RhoA/ROCK signaling pathway.; iScience, 27: 108969 PubMed link GSE243282  
Caiazzo, Massimiliano et al. (2011) Direct generation of functional dopaminergic neurons from mouse and human fibroblasts.; Nature, [no vol.]: [no pages] PubMed link GSE27174  
Caiazzo, Massimiliano et al. (2015) Direct conversion of fibroblasts into functional astrocytes by defined transcription factors.; Stem Cell Reports, 4: 25-36 PubMed link GSE59018  
Caimari, Antoni et al. (2010) Peripheral blood mononuclear cells as a model to study the response of energy homeostasis-related genes to acute changes in feeding conditions.; OMICS, 14: 129-41 PubMed link GSE14497  
Cain, Jacob T et al. (2014) Shifts in the vascular endothelial growth factor isoforms result in transcriptome changes correlated with early neural stem cell proliferation and differentiation in mouse forebrain.; Dev Neurobiol, 74: 63-81 PubMed link GSE52542  
Caires-Júnior, Luiz Carlos et al. (2018) Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells.; Nat Commun, 9: 475 PubMed link GSE102128  
Cajigas, Ivelisse et al. [Unknown date]The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain.; Mol Cell, 71: 956-972.e9 PubMed link GSE102089  
Calabretta, Sara et al. [Unknown date]Loss of PRMT5 Promotes PDGFR? Degradation during Oligodendrocyte Differentiation and Myelination.; Dev Cell, 46: 426-440.e5 PubMed link GSE116242  
Calafate, Sara et al. (2023) Early alterations in the MCH system link aberrant neuronal activity and sleep disturbances in a mouse model of Alzheimer's disease.; Nat Neurosci, 26: 1021-1031 PubMed link GSE225181  
Calarco, John A et al. (2009) Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein.; Cell, 138: 898-910 PubMed link GSE16187  
Calder, Jack et al. (2021) Resistance to BET inhibitors in lung adenocarcinoma is mediated by casein kinase phosphorylation of BRD4.; Oncogenesis, 10: 27 PubMed link GSE164813  
Calderon, Boris et al. (2011) Entry of diabetogenic T cells into islets induces changes that lead to amplification of the cellular response.; Proc Natl Acad Sci U S A, 108: 1567-72 PubMed link GSE26147  
Calderon, Lesly et al. (2022) Cohesin-dependence of neuronal gene expression relates to chromatin loop length.; Elife, 11: [no pages] PubMed link GSE172427   GSE172425  
Calderon-Gonzalez, Ricardo et al. (2017) GNP-GAPDH1-22nanovaccines prevent neonatal listeriosis by blocking microglial apoptosis and bacterial dissemination.; Oncotarget, 8: 53916-53934 PubMed link GSE32505  
Calderón, Lesly et al. (2012) Synergistic, context-dependent, and hierarchical functions of epithelial components in thymic microenvironments.; Cell, 149: 159-72 PubMed link GSE33268  
Caldi Gomes, Lucas et al. (2024) Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target.; Nat Commun, 15: 4893 PubMed link GSE234245  
Caldwell, Alison L M et al. (2022) Aberrant astrocyte protein secretion contributes to altered neuronal development in multiple models of neurodevelopmental disorders.; Nat Neurosci, 25: 1163-1178 PubMed link GSE139285  
Caldwell, Andrew B et al. (2020) Dedifferentiation and neuronal repression define familial Alzheimer's disease.; Sci Adv, 6: [no pages] PubMed link GSE123891  
Caldwell, Andrew B et al. (2022) Endotype reversal as a novel strategy for screening drugs targeting familial Alzheimer's disease.; Alzheimers Dement, [no vol.]: [no pages] PubMed link GSE95673  
Caldwell, Andrew B et al. (2022) Transcriptomic profiling of sporadic Alzheimer's disease patients.; Mol Brain, 15: 83 PubMed link GSE203206  
Calero-Nieto, Fernando J et al. (2014) Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.; EMBO J, 33: 1212-26 PubMed link GSE47988  
Cali, Christopher P et al. (2019) C9orf72 intermediate repeats are associated with corticobasal degeneration, increased C9orf72 expression and disruption of autophagy.; Acta Neuropathol, 138: 795-811 PubMed link GSE133323  
Caliskan, Minal et al. (2011) The effects of EBV transformation on gene expression levels and methylation profiles.; Hum Mol Genet, 20: 1643-52 PubMed link GSE26210  
Callari, Maurizio et al. (2014) Subtype-dependent prognostic relevance of an interferon-induced pathway metagene in node-negative breast cancer.; Mol Oncol, 8: 1278-89 PubMed link GSE37181  
Callejas, Blanca E et al. (2025) Calcitonin gene-related peptide promotes epithelial reparative and anticolitic functions of IL-4 educated human macrophages.; Am J Physiol Gastrointest Liver Physiol, 328: G1-G16 PubMed link GSE242543  
Calligaris, Raffaella et al. (2009) A transcriptome analysis identifies molecular effectors of unconjugated bilirubin in human neuroblastoma SH-SY5Y cells.; BMC Genomics, 10: 543 PubMed link GSE16768  
Calligaris, Raffaella et al. (2015) Blood transcriptomics of drug-naïve sporadic Parkinson's disease patients.; BMC Genomics, 16: 876 PubMed link GSE72267  
Calvet, Loreley et al. (2022) YAP1 is essential for malignant mesothelioma tumor maintenance.; BMC Cancer, 22: 639 PubMed link GSE196714   GSE196691   GSE196672  
Calvo, Ezequiel et al. (2012) Specific transcriptional response of four blockers of estrogen receptors on estradiol-modulated genes in the mouse mammary gland.; Breast Cancer Res Treat, 134: 625-47 PubMed link GSE35206  
Calvo, Julia et al. (2013) Infrequent loss of luminal differentiation in ductal breast cancer metastasis.; PLoS One, 8: e78097 PubMed link GSE44408  
Calvo, Sarah et al. (2006) Systematic identification of human mitochondrial disease genes through integrative genomics.; Nat Genet, 38: 576-82 PubMed link GSE4330  
Calvo-Garrido, Javier et al. [Unknown date]SQSTM1/p62-Directed Metabolic Reprogramming Is Essential for Normal Neurodifferentiation.; Stem Cell Reports, 12: 696-711 PubMed link GSE99559  
Calyjur, Priscila Clara et al. (2016) The mdx Mutation in the 129/Sv Background Results in a Milder Phenotype: Transcriptome Comparative Analysis Searching for the Protective Factors.; PLoS One, 11: e0150748 PubMed link GSE77126  
Calzari, Luciano et al. (2020) Transcriptome Analysis of iPSC-Derived Neurons from Rubinstein-Taybi Patients Reveals Deficits in Neuronal Differentiation.; Mol Neurobiol, 57: 3685-3701 PubMed link GSE135287  
Camarena, Vladimir et al. (2017) cAMP signaling regulates DNA hydroxymethylation by augmenting the intracellular labile ferrous iron pool.; Elife, 6: [no pages] PubMed link GSE101153  
Camargo Moreno, Maria et al. (2017) Heterogeneity of p53 dependent genomic responses following ethanol exposure in a developmental mouse model of fetal alcohol spectrum disorder.; PLoS One, 12: e0180873 PubMed link GSE100217  
Camateros, Pierre et al. (2009) Modulation of the allergic asthma transcriptome following resiquimod treatment.; Physiol Genomics, 38: 303-18 PubMed link GSE13032  
Cameron, Alanna M et al. (2019) Inflammatory macrophage dependence on NAD+salvage is a consequence of reactive oxygen species-mediated DNA damage.; Nat Immunol, 20: 420-432 PubMed link GSE123596  
Cameron, Darren et al. (2019) Transcriptional Changes following Cellular Knockdown of the Schizophrenia Risk GeneSETD1AAre Enriched for Common Variant Association with the Disorder.; Mol Neuropsychiatry, 5: 109-114 PubMed link GSE118941  
Cameron, Donald P et al. (2023) Coinhibition of topoisomerase 1 and BRD4-mediated pause release selectively kills pancreatic cancer via readthrough transcription.; Sci Adv, 9: eadg5109 PubMed link GSE211468  
Cameron, Evan G et al. (2024) A molecular switch for neuroprotective astrocyte reactivity.; Nature, 626: 574-582 PubMed link GSE245816  
Camiña-Tato, Montse et al. (2010) Gender-associated differences of perforin polymorphisms in the susceptibility to multiple sclerosis.; J Immunol, 185: 5392-404 PubMed link GSE23205  
Cammaerts, Sophia et al. (2015) Schizophrenia-Associated MIR204 Regulates Noncoding RNAs and Affects Neurotransmitter and Ion Channel Gene Sets.; PLoS One, 10: e0144428 PubMed link GSE69675  
Campbell, Amy E et al. (2013) Analysis of disease-causing GATA1 mutations in murine gene complementation systems.; Blood, 121: 5218-27 PubMed link GSE43356  
Campbell, Amy E et al. (2023) Compromised nonsense-mediated RNA decay results in truncated RNA-binding protein production upon DUX4 expression.; Cell Rep, 42: 112642 PubMed link GSE178759  
Campbell, Aoife et al. (2022) AntimiR targeting of microRNA-134 reduces seizures in a mouse model of Angelman syndrome.; Mol Ther Nucleic Acids, 28: 514-529 PubMed link GSE199276  
Campbell, Eric L et al. (2014) Transmigrating neutrophils shape the mucosal microenvironment through localized oxygen depletion to influence resolution of inflammation.; Immunity, 40: 66-77 PubMed link GSE39681  
Campbell, Gordon R O et al. (2011) Transcription factors expressed in olfactory bulb local progenitor cells revealed by genome-wide transcriptome profiling.; Mol Cell Neurosci, 46: 548-61 PubMed link GSE26406  
Cáceres, Mario et al. (2003) Elevated gene expression levels distinguish human from non-human primate brains.; Proc Natl Acad Sci U S A, 100: 13030-5 PubMed link GSE7540.1  
Cáceres-Gutiérrez, Rodrigo E et al. (2021) Proteasome inhibition alters mitotic progression through the upregulation of centromeric α-Satellite RNAs.; FEBS J, [no vol.]: [no pages] PubMed link GSE165325  
Çakan, Elif et al. (2023) TLR9 ligand sequestration by chemokine CXCL4 negatively affects central B cell tolerance.; J Exp Med, 220: [no pages] PubMed link GSE227639  
Çakır, Işın et al. (2022) Sulforaphane reduces obesity by reversing leptin resistance.; Elife, 11: [no pages] PubMed link GSE181477