List of all 16,750 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
Byles, Vanessa et al. (2021) Hepatic mTORC1 signaling activates ATF4 as part of its metabolic response to feeding and insulin.; Mol Metab, 53: 101309 |
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GSE173578 |
Byrnes, Amy E et al. (2023) Lipid nanoparticle delivery limits antisense oligonucleotide activity and cellular distribution in the brain after intracerebroventricular injection.; Mol Ther Nucleic Acids, 32: 773-793 |
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GSE220777 |
Byrnes, Andrea et al. (2009) Gene expression in peripheral blood leukocytes in monozygotic twins discordant for chronic fatigue: no evidence of a biomarker.; PLoS One, 4: e5805 |
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GSE16059 |
Bystrykh, Leonid et al. (2005) Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.; Nat Genet, 37: 225-32 |
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GSE2031 |
Bøgsted, Martin et al. (2013) Proof of the concept to use a malignant B cell line drug screen strategy for identification and weight of melphalan resistance genes in multiple myeloma.; PLoS One, 8: e83252 |
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GSE22759 |
Caba, Octavio et al. (2014) Transcriptional profiling of peripheral blood in pancreatic adenocarcinoma patients identifies diagnostic biomarkers.; Dig Dis Sci, 59: 2714-20 |
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GSE49641 |
Cabeza-Arvelaiz, Yofre et al. (2012) Transcriptome analysis of a rotenone model of parkinsonism reveals complex I-tied and -untied toxicity mechanisms common to neurodegenerative diseases.; PLoS One, 7: e44700 |
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GSE35642 |
Cabili, Moran N et al. (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.; Genes Dev, 25: 1915-27 |
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GSE30554 |
Cabrera, Robert M et al. (2012) Transcriptional analyses of two mouse models of spina bifida.; Birth Defects Res A Clin Mol Teratol, 94: 782-9 |
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GSE25974 GSE25975 |
Cabrera, Susanne M et al. (2022) Probiotic normalization of systemic inflammation in siblings of type 1 diabetes patients: an open-label pilot study.; Sci Rep, 12: 3306 |
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GSE162622 |
Cabrera-Mendoza, Brenda et al. (2019) Brain Gene Expression Profiling of Individuals With Dual Diagnosis Who Died by Suicide.; J Dual Diagn, [no vol.]: 1-14 |
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GSE125681 |
Cabrera-Reyes, Erika Alejandra et al. (2019) Transcriptomic analysis reveals new hippocampal gene networks induced by prolactin.; Sci Rep, 9: 13765 |
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GSE119435 |
Cacheaux, Luisa P et al. (2009) Transcriptome profiling reveals TGF-beta signaling involvement in epileptogenesis.; J Neurosci, 29: 8927-35 |
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GSE12304 |
Cadet, Jean Lud et al. (2009) Methamphetamine preconditioning alters midbrain transcriptional responses to methamphetamine-induced injury in the rat striatum.; PLoS One, 4: e7812 |
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GSE17665 |
Cadet, Jean Lud et al. (2010) Methamphetamine-induced dopamine-independent alterations in striatal gene expression in the 6-hydroxydopamine hemiparkinsonian rats.; PLoS One, 5: e15643 |
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GSE24233 |
Cadet, Jean Lud et al. (2014) Enhanced upregulation of CRH mRNA expression in the nucleus accumbens of male rats after a second injection of methamphetamine given thirty days later.; PLoS One, 9: e84665 |
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GSE46717 |
Caesar, Robert et al. (2015) Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling.; Cell Metab, 22: 658-68 |
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GSE70922 |
Caesar, Robert et al. (2016) Interaction between dietary lipids and gut microbiota regulates hepatic cholesterol metabolism.; J Lipid Res, 57: 474-81 |
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GSE73195 |
Caescu, Cristina I et al. (2015) Colony stimulating factor-1 receptor signaling networks inhibit mouse macrophage inflammatory responses by induction of microRNA-21.; Blood, 125: e1-13 |
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GSE62630 |
Caescu, Cristina I et al. (2021) Inhibition of HIPK2 Alleviates Thoracic Aortic Disease in Mice With Progressively Severe Marfan Syndrome.; Arterioscler Thromb Vasc Biol, 41: 2483-2493 |
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GSE145903.2 GSE145903.1 |
Caetano-Anollés, Kelsey et al. (2015) Synergistic and antagonistic interplay between myostatin gene expression and physical activity levels on gene expression patterns in triceps Brachii muscles of C57/BL6 mice.; PLoS One, 10: e0116828 |
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GSE31839 |
Caetano-Anollés, Kelsey et al. (2016) Cerebellum Transcriptome of Mice Bred for High Voluntary Activity Offers Insights into Locomotor Control and Reward-Dependent Behaviors.; PLoS One, 11: e0167095 |
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GSE84208 |
Caffrey, Daniel R et al. (2011) siRNA off-target effects can be reduced at concentrations that match their individual potency.; PLoS One, 6: e21503 |
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GSE28786.2 GSE28786.1 |
Caglayan, Safak et al. (2020) Optic Atrophy 1 Controls Human Neuronal Development by Preventing Aberrant Nuclear DNA Methylation.; iScience, 23: 101154 |
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GSE117976 |
Cahoy, John D et al. (2008) A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function.; J Neurosci, 28: 264-78 |
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GSE9566 |
Cai, Anxiang et al. (2023) Dapagliflozin alleviates renal inflammation and protects against diabetic kidney diseases, both dependent and independent of blood glucose levels.; Front Immunol, 14: 1205834 |
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GSE246576 |
Cai, Changmeng et al. (2013) ERG induces androgen receptor-mediated regulation of SOX9 in prostate cancer.; J Clin Invest, 123: 1109-22 |
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GSE32269 |
Cai, Hui et al. (2012) Effects of aging and anatomic location on gene expression in human retina.; Front Aging Neurosci, 4: 8 |
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GSE32614 |
Cai, Jing et al. (2023) AMPK attenuates SHH subgroup medulloblastoma growth and metastasis by inhibiting NF-κB activation.; Cell Biosci, 13: 15 |
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GSE218076 |
Cai, Jun et al. (2010) Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells.; PLoS Comput Biol, 6: e1000707 |
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GSE12550 |
Cai, Junrong et al. (2024) The browning and mobilization of subcutaneous white adipose tissue supports efficient skin repair.; Cell Metab, 36: 1287-1301.e7 |
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GSE247964 |
Cai, Menghua et al. (2019) Profiling the Gene Expression and DNA Methylation in the Mouse Brain after Ischemic Preconditioning.; Neuroscience, 406: 249-261 |
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GSE122107 |
Cai, Sa et al. [Unknown date]Directed Differentiation of Human Bone Marrow Stromal Cells to Fate-Committed Schwann Cells.; Stem Cell Reports, 9: 1097-1108 |
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GSE102049 |
Cai, Sun-Li et al. (2022) SETD4 cells contribute to brain development and maintain adult stem cell reservoir for neurogenesis.; Stem Cell Reports, 17: 2081-2096 |
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GSE200159 |
Cai, Ting et al. (2021) Deletion of RBMX RGG/RG motif in Shashi-XLID syndrome leads to aberrant p53 activation and neuronal differentiation defects.; Cell Rep, 36: 109337 |
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GSE156923 |
Cai, Wei et al. (2022) Neuroprotection against ischemic stroke requires a specific class of early responder T cells in mice.; J Clin Invest, 132: [no pages] |
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GSE201054 |
Cai, Weikang et al. (2021) Peripheral Insulin Regulates a Broad Network of Gene Expression in Hypothalamus, Hippocampus, and Nucleus Accumbens.; Diabetes, 70: 1857-1873 |
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GSE132352 |
Cai, Weikang et al. [Unknown date]Domain-dependent effects of insulin and IGF-1 receptors on signalling and gene expression.; Nat Commun, 8: 14892 |
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GSE81921 |
Cai, Wenjin et al. (2024) An Engineered Hierarchical Hydrogel with Immune Responsiveness and Targeted Mitochondrial Transfer to Augmented Bone Regeneration.; Adv Sci (Weinh), 11: e2406287 |
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GSE239590 |
Cai, Xiongwei et al. (2015) Runx1 Deficiency Decreases Ribosome Biogenesis and Confers Stress Resistance to Hematopoietic Stem and Progenitor Cells.; Cell Stem Cell, 17: 165-77 |
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GSE67609 |
Cai, Yi et al. (2014) Increased complement C1q level marks active disease in human tuberculosis.; PLoS One, 9: e92340 |
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GSE54992 |
Cai, Yu-Wen et al. (2024) MAP3K1 mutations confer tumor immune heterogeneity in hormone receptor-positive HER2-negative breast cancer.; J Clin Invest, 135: [no pages] |
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GSE276527 |
Cai, Yuanqing et al. (2024) The GDNF-gel/HA-Mg conduit promotes the repair of peripheral nerve defects by regulating PPAR-γ/RhoA/ROCK signaling pathway.; iScience, 27: 108969 |
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GSE243282 |
Caiazzo, Massimiliano et al. (2011) Direct generation of functional dopaminergic neurons from mouse and human fibroblasts.; Nature, [no vol.]: [no pages] |
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GSE27174 |
Caiazzo, Massimiliano et al. (2015) Direct conversion of fibroblasts into functional astrocytes by defined transcription factors.; Stem Cell Reports, 4: 25-36 |
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GSE59018 |
Caimari, Antoni et al. (2010) Peripheral blood mononuclear cells as a model to study the response of energy homeostasis-related genes to acute changes in feeding conditions.; OMICS, 14: 129-41 |
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GSE14497 |
Cain, Jacob T et al. (2014) Shifts in the vascular endothelial growth factor isoforms result in transcriptome changes correlated with early neural stem cell proliferation and differentiation in mouse forebrain.; Dev Neurobiol, 74: 63-81 |
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GSE52542 |
Caires-Júnior, Luiz Carlos et al. (2018) Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells.; Nat Commun, 9: 475 |
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GSE102128 |
Cajigas, Ivelisse et al. [Unknown date]The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain.; Mol Cell, 71: 956-972.e9 |
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GSE102089 |
Calabretta, Sara et al. [Unknown date]Loss of PRMT5 Promotes PDGFR? Degradation during Oligodendrocyte Differentiation and Myelination.; Dev Cell, 46: 426-440.e5 |
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GSE116242 |
Calafate, Sara et al. (2023) Early alterations in the MCH system link aberrant neuronal activity and sleep disturbances in a mouse model of Alzheimer's disease.; Nat Neurosci, 26: 1021-1031 |
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GSE225181 |
Calarco, John A et al. (2009) Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein.; Cell, 138: 898-910 |
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GSE16187 |
Calder, Jack et al. (2021) Resistance to BET inhibitors in lung adenocarcinoma is mediated by casein kinase phosphorylation of BRD4.; Oncogenesis, 10: 27 |
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GSE164813 |
Calderon, Boris et al. (2011) Entry of diabetogenic T cells into islets induces changes that lead to amplification of the cellular response.; Proc Natl Acad Sci U S A, 108: 1567-72 |
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GSE26147 |
Calderon, Lesly et al. (2022) Cohesin-dependence of neuronal gene expression relates to chromatin loop length.; Elife, 11: [no pages] |
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GSE172427 GSE172425 |
Calderon-Gonzalez, Ricardo et al. (2017) GNP-GAPDH1-22nanovaccines prevent neonatal listeriosis by blocking microglial apoptosis and bacterial dissemination.; Oncotarget, 8: 53916-53934 |
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GSE32505 |
Calderón, Lesly et al. (2012) Synergistic, context-dependent, and hierarchical functions of epithelial components in thymic microenvironments.; Cell, 149: 159-72 |
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GSE33268 |
Caldi Gomes, Lucas et al. (2024) Multiomic ALS signatures highlight subclusters and sex differences suggesting the MAPK pathway as therapeutic target.; Nat Commun, 15: 4893 |
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GSE234245 |
Caldwell, Alison L M et al. (2022) Aberrant astrocyte protein secretion contributes to altered neuronal development in multiple models of neurodevelopmental disorders.; Nat Neurosci, 25: 1163-1178 |
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GSE139285 |
Caldwell, Andrew B et al. (2020) Dedifferentiation and neuronal repression define familial Alzheimer's disease.; Sci Adv, 6: [no pages] |
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GSE123891 |
Caldwell, Andrew B et al. (2022) Endotype reversal as a novel strategy for screening drugs targeting familial Alzheimer's disease.; Alzheimers Dement, [no vol.]: [no pages] |
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GSE95673 |
Caldwell, Andrew B et al. (2022) Transcriptomic profiling of sporadic Alzheimer's disease patients.; Mol Brain, 15: 83 |
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GSE203206 |
Calero-Nieto, Fernando J et al. (2014) Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.; EMBO J, 33: 1212-26 |
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GSE47988 |
Cali, Christopher P et al. (2019) C9orf72 intermediate repeats are associated with corticobasal degeneration, increased C9orf72 expression and disruption of autophagy.; Acta Neuropathol, 138: 795-811 |
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GSE133323 |
Caliskan, Minal et al. (2011) The effects of EBV transformation on gene expression levels and methylation profiles.; Hum Mol Genet, 20: 1643-52 |
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GSE26210 |
Callari, Maurizio et al. (2014) Subtype-dependent prognostic relevance of an interferon-induced pathway metagene in node-negative breast cancer.; Mol Oncol, 8: 1278-89 |
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GSE37181 |
Callejas, Blanca E et al. (2025) Calcitonin gene-related peptide promotes epithelial reparative and anticolitic functions of IL-4 educated human macrophages.; Am J Physiol Gastrointest Liver Physiol, 328: G1-G16 |
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GSE242543 |
Calligaris, Raffaella et al. (2009) A transcriptome analysis identifies molecular effectors of unconjugated bilirubin in human neuroblastoma SH-SY5Y cells.; BMC Genomics, 10: 543 |
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GSE16768 |
Calligaris, Raffaella et al. (2015) Blood transcriptomics of drug-naïve sporadic Parkinson's disease patients.; BMC Genomics, 16: 876 |
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GSE72267 |
Calvet, Loreley et al. (2022) YAP1 is essential for malignant mesothelioma tumor maintenance.; BMC Cancer, 22: 639 |
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GSE196714 GSE196691 GSE196672 |
Calvo, Ezequiel et al. (2012) Specific transcriptional response of four blockers of estrogen receptors on estradiol-modulated genes in the mouse mammary gland.; Breast Cancer Res Treat, 134: 625-47 |
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GSE35206 |
Calvo, Julia et al. (2013) Infrequent loss of luminal differentiation in ductal breast cancer metastasis.; PLoS One, 8: e78097 |
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GSE44408 |
Calvo, Sarah et al. (2006) Systematic identification of human mitochondrial disease genes through integrative genomics.; Nat Genet, 38: 576-82 |
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GSE4330 |
Calvo-Garrido, Javier et al. [Unknown date]SQSTM1/p62-Directed Metabolic Reprogramming Is Essential for Normal Neurodifferentiation.; Stem Cell Reports, 12: 696-711 |
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GSE99559 |
Calyjur, Priscila Clara et al. (2016) The mdx Mutation in the 129/Sv Background Results in a Milder Phenotype: Transcriptome Comparative Analysis Searching for the Protective Factors.; PLoS One, 11: e0150748 |
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GSE77126 |
Calzari, Luciano et al. (2020) Transcriptome Analysis of iPSC-Derived Neurons from Rubinstein-Taybi Patients Reveals Deficits in Neuronal Differentiation.; Mol Neurobiol, 57: 3685-3701 |
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GSE135287 |
Camarena, Vladimir et al. (2017) cAMP signaling regulates DNA hydroxymethylation by augmenting the intracellular labile ferrous iron pool.; Elife, 6: [no pages] |
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GSE101153 |
Camargo Moreno, Maria et al. (2017) Heterogeneity of p53 dependent genomic responses following ethanol exposure in a developmental mouse model of fetal alcohol spectrum disorder.; PLoS One, 12: e0180873 |
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GSE100217 |
Camateros, Pierre et al. (2009) Modulation of the allergic asthma transcriptome following resiquimod treatment.; Physiol Genomics, 38: 303-18 |
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GSE13032 |
Cameron, Alanna M et al. (2019) Inflammatory macrophage dependence on NAD+salvage is a consequence of reactive oxygen species-mediated DNA damage.; Nat Immunol, 20: 420-432 |
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GSE123596 |
Cameron, Darren et al. (2019) Transcriptional Changes following Cellular Knockdown of the Schizophrenia Risk GeneSETD1AAre Enriched for Common Variant Association with the Disorder.; Mol Neuropsychiatry, 5: 109-114 |
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GSE118941 |
Cameron, Donald P et al. (2023) Coinhibition of topoisomerase 1 and BRD4-mediated pause release selectively kills pancreatic cancer via readthrough transcription.; Sci Adv, 9: eadg5109 |
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GSE211468 |
Cameron, Evan G et al. (2024) A molecular switch for neuroprotective astrocyte reactivity.; Nature, 626: 574-582 |
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GSE245816 |
Camiña-Tato, Montse et al. (2010) Gender-associated differences of perforin polymorphisms in the susceptibility to multiple sclerosis.; J Immunol, 185: 5392-404 |
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GSE23205 |
Cammaerts, Sophia et al. (2015) Schizophrenia-Associated MIR204 Regulates Noncoding RNAs and Affects Neurotransmitter and Ion Channel Gene Sets.; PLoS One, 10: e0144428 |
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GSE69675 |
Campbell, Amy E et al. (2013) Analysis of disease-causing GATA1 mutations in murine gene complementation systems.; Blood, 121: 5218-27 |
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GSE43356 |
Campbell, Amy E et al. (2023) Compromised nonsense-mediated RNA decay results in truncated RNA-binding protein production upon DUX4 expression.; Cell Rep, 42: 112642 |
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GSE178759 |
Campbell, Aoife et al. (2022) AntimiR targeting of microRNA-134 reduces seizures in a mouse model of Angelman syndrome.; Mol Ther Nucleic Acids, 28: 514-529 |
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GSE199276 |
Campbell, Eric L et al. (2014) Transmigrating neutrophils shape the mucosal microenvironment through localized oxygen depletion to influence resolution of inflammation.; Immunity, 40: 66-77 |
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GSE39681 |
Campbell, Gordon R O et al. (2011) Transcription factors expressed in olfactory bulb local progenitor cells revealed by genome-wide transcriptome profiling.; Mol Cell Neurosci, 46: 548-61 |
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GSE26406 |
Cáceres, Mario et al. (2003) Elevated gene expression levels distinguish human from non-human primate brains.; Proc Natl Acad Sci U S A, 100: 13030-5 |
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GSE7540.1 |
Cáceres-Gutiérrez, Rodrigo E et al. (2021) Proteasome inhibition alters mitotic progression through the upregulation of centromeric α-Satellite RNAs.; FEBS J, [no vol.]: [no pages] |
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GSE165325 |
Çakan, Elif et al. (2023) TLR9 ligand sequestration by chemokine CXCL4 negatively affects central B cell tolerance.; J Exp Med, 220: [no pages] |
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GSE227639 |
Çakır, Işın et al. (2022) Sulforaphane reduces obesity by reversing leptin resistance.; Elife, 11: [no pages] |
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GSE181477 |