List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Brendza, Robert et al. (2021) Genetic ablation of Gpnmb does not alter synuclein-related pathology.; Neurobiol Dis, 159: 105494 |
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GSE163559 |
| Brennan, Christopher M et al. (2022) DUX4 expression activates JNK and p38 MAP kinases in myoblasts.; Dis Model Mech, 15: [no pages] |
|
GSE205421 |
| Brennan, Faith H et al. (2022) Microglia coordinate cellular interactions during spinal cord repair in mice.; Nat Commun, 13: 4096 |
|
GSE196928.1 |
| Brennan, Nicholas A et al. (2026) Mitochondrial protein import stress causes lysosomal damage and progressive tissue atrophy.; EMBO Rep, 27: 2973-3000 |
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GSE282262.1 |
| Brennand, K et al. (2015) Phenotypic differences in hiPSC NPCs derived from patients with schizophrenia.; Mol Psychiatry, 20: 361-8 |
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GSE40102 |
| Brennand, Kristen J et al. (2011) Modelling schizophrenia using human induced pluripotent stem cells.; Nature, [no vol.]: [no pages] |
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GSE25673 |
| Brennen, W Nathaniel et al. (2021) Resistance to androgen receptor signaling inhibition does not necessitate development of neuroendocrine prostate cancer.; JCI Insight, 6: [no pages] |
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GSE160393 |
| Brenner, Eric et al. (2020) Single cell transcriptome profiling of the human alcohol-dependent brain.; Hum Mol Genet, 29: 1144-1153 |
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GSE141552 |
| Brescia, Paola et al. (2018) MEF2B Instructs Germinal Center Development and Acts as an Oncogene in B Cell Lymphomagenesis.; Cancer Cell, 34: 453-465.e9 |
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GSE110676 |
| Bresciani, Erica et al. (2021) Redundant mechanisms driven independently by RUNX1 and GATA2 for hematopoietic development.; Blood Adv, 5: 4949-4962 |
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GSE158100 |
| Bresolin, S et al. (2012) Gene expression signatures of pediatric myelodysplastic syndromes are associated with risk of evolution into acute myeloid leukemia.; Leukemia, [no vol.]: [no pages] |
|
GSE29326 |
| Bresolin, Silvia et al. (2010) Gene expression-based classification as an independent predictor of clinical outcome in juvenile myelomonocytic leukemia.; J Clin Oncol, 28: 1919-27 |
|
GSE14858 |
| Bresque, Mariana et al. (2025) FABP7 Expression Modulates the Response of Astrocytes to Induced Endotoxemia.; Glia, 73: 1627-1641 |
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GSE279612 |
| Bressan, Raul Bardini et al. (2021) Regional identity of human neural stem cells determines oncogenic responses to histone H3.3 mutants.; Cell Stem Cell, 28: 877-893.e9 |
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GSE163044 |
| Bresser, Kaspar et al. (2020) A mouse model that is immunologically tolerant to reporter and modifier proteins.; Commun Biol, 3: 273 |
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GSE147757 |
| Breville, Gautier et al. (2026) Pro-Inflammatory c-Met+CD4 T Cells in Multiple Sclerosis.; Ann Neurol, 99: 261-273 |
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GSE305678 |
| Breynaert, Christine et al. (2013) Unique gene expression and MR T2 relaxometry patterns define chronic murine dextran sodium sulphate colitis as a model for connective tissue changes in human Crohn's disease.; PLoS One, 8: e68876 |
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GSE42768 |
| Breynaert, Christine et al. (2016) Genetic Deletion of Tissue Inhibitor of Metalloproteinase-1/TIMP-1 Alters Inflammation and Attenuates Fibrosis in Dextran Sodium Sulphate-induced Murine Models of Colitis.; J Crohns Colitis, [no vol.]: [no pages] |
|
GSE73424 |
| Breßer, Mona et al. (2025) Macrophage-induced enteric neurodegeneration leads to motility impairment during gut inflammation.; EMBO Mol Med, 17: 301-335 |
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GSE263125.2 GSE263125.1 |
| Brichta, Lars et al. (2015) Identification of neurodegenerative factors using translatome-regulatory network analysis.; Nat Neurosci, 18: 1325-33 |
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GSE54795 GSE70133 GSE64526 GSE64452 |
| Brida, Kasey L et al. (2025) Reelin marks cocaine-activated striatal neurons, promotes neuronal excitability, and regulates cocaine reward.; Sci Adv, 11: eads4441 |
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GSE269366 |
| Bridges, James P et al. (2014) Epithelial SCAP/INSIG/SREBP signaling regulates multiple biological processes during perinatal lung maturation.; PLoS One, 9: e91376 |
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GSE53397 |
| Bridges, Kamiya et al. (2022) Loss ofRunx1Induces Granulosa Cell Defects and Development of Ovarian Tumors in the Mouse.; Int J Mol Sci, 23: [no pages] |
|
GSE211241 |
| Briese, Michael et al. (2020) Loss of Tdp-43 disrupts the axonal transcriptome of motoneurons accompanied by impaired axonal translation and mitochondria function.; Acta Neuropathol Commun, 8: 116 |
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GSE147607 |
| Brifault, Coralie et al. (2020) Deletion of the Gene Encoding the NMDA Receptor GluN1 Subunit in Schwann Cells Causes Ultrastructural Changes in Remak Bundles and Hypersensitivity in Pain Processing.; J Neurosci, 40: 9121-9136 |
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GSE154182 |
| Briggs, James A et al. (2013) Integration-free induced pluripotent stem cells model genetic and neural developmental features of down syndrome etiology.; Stem Cells, 31: 467-78 |
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GSE42956 |
| Brightman, Diana S et al. (2018) MLL1 is essential for retinal neurogenesis and horizontal inner neuron integrity.; Sci Rep, 8: 11902 |
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GSE103264 |
| Brigidi, G Stefano et al. (2019) Genomic Decoding of Neuronal Depolarization by Stimulus-Specific NPAS4 Heterodimers.; Cell, 179: 373-391.e27 |
|
GSE134203 |
| Brina, Daniela et al. (2015) eIF6 coordinates insulin sensitivity and lipid metabolism by coupling translation to transcription.; Nat Commun, 6: 8261 |
|
GSE61121 |
| Brinkmann, Christel Rothe et al. (2018) Treatment of HIV-Infected Individuals with the Histone Deacetylase Inhibitor Panobinostat Results in Increased Numbers of Regulatory T Cells and LimitsEx VivoLipopolysaccharide-Induced Inflammatory Responses.; mSphere, 3: [no pages] |
|
GSE109792 |
| Brinkmeier, Michelle L et al. (2020) Rathke's cleft-like cysts arise from Isl1 deletion in murine pituitary progenitors.; J Clin Invest, 130: 4501-4515 |
|
GSE149019 |
| Briot, Anaïs et al. (2015) Endothelial NOTCH1 is suppressed by circulating lipids and antagonizes inflammation during atherosclerosis.; J Exp Med, 212: 2147-63 |
|
GSE72633 |
| Briso, Eva M et al. (2013) Inflammation-mediated skin tumorigenesis induced by epidermal c-Fos.; Genes Dev, 27: 1959-73 |
|
GSE50621 |
| Brito, Ariadna et al. (2021) Cell fusion enhances energy metabolism of mesenchymal tumor hybrid cells to sustain their proliferation and invasion.; BMC Cancer, 21: 863 |
|
GSE171471 |
| Brivio, Elena et al. (2023) Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus.; Cell Rep, 42: 112874 |
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GSE201032 |
| Brocato, Emily R et al. (2023) Adolescent binge ethanol impacts H3K36me3 regulation of synaptic genes.; Front Mol Neurosci, 16: 1082104 |
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GSE220745 |
| Brock, Amy et al. (2014) Silencing HoxA1 by intraductal injection of siRNA lipidoid nanoparticles prevents mammary tumor progression in mice.; Sci Transl Med, 6: 217ra2 |
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GSE50813 |
| Brockington, Alice et al. (2013) Unravelling the enigma of selective vulnerability in neurodegeneration: motor neurons resistant to degeneration in ALS show distinct gene expression characteristics and decreased susceptibility to excitotoxicity.; Acta Neuropathol, 125: 95-109 |
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GSE40438 |
| Brodehl, Andreas et al. (2017) Transgenic mice overexpressing desmocollin-2 (DSC2) develop cardiomyopathy associated with myocardial inflammation and fibrotic remodeling.; PLoS One, 12: e0174019 |
|
GSE84645 |
| Broderick, Claire et al. (2021) Host transcriptional response to TB preventive therapy differentiates two sub-groups of IGRA-positive individuals.; Tuberculosis (Edinb), 127: 102033 |
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GSE153340 GSE153326 |
| Brodtkorb, Marianne et al. (2014) Whole-genome integrative analysis reveals expression signatures predicting transformation in follicular lymphoma.; Blood, 123: 1051-4 |
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GSE53820 |
| Broeren, Mathijs G A et al. (2016) Disease-Regulated Gene Therapy with Anti-Inflammatory Interleukin-10 Under the Control of the CXCL10 Promoter for the Treatment of Rheumatoid Arthritis.; Hum Gene Ther, 27: 244-54 |
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GSE77298.2 |
| Bronner, Iraad F et al. (2009) Comprehensive mRNA expression profiling distinguishes tauopathies and identifies shared molecular pathways.; PLoS One, 4: e6826 |
|
E-MEXP-2280 |
| Brooks, Matthew J et al. (2011) Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.; Mol Vis, 17: 3034-54 |
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GSE180142 GSE33141 |
| Brooks, Matthew J et al. (2019) Improved Retinal Organoid Differentiation by Modulating Signaling Pathways Revealed by Comparative Transcriptome Analyses with Development In Vivo.; Stem Cell Reports, 13: 891-905 |
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GSE136379 GSE102794 |
| Brooks, Michael D et al. (2014) PDE7B is a novel, prognostically significant mediator of glioblastoma growth whose expression is regulated by endothelial cells.; PLoS One, 9: e107397 |
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GSE51253 |
| Brose, Rebecca Deering et al. (2018) Hydroxyurea attenuates oxidative, metabolic, and excitotoxic stress in rat hippocampal neurons and improves spatial memory in a mouse model of Alzheimer's disease.; Neurobiol Aging, 72: 121-133 |
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GSE111940 |
| Brosens, Jan J et al. (2014) Uterine selection of human embryos at implantation.; Sci Rep, 4: 3894 |
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GSE47019 |
| Brosius Lutz, Amanda et al. (2022) An RNA-sequencing transcriptome of the rodent Schwann cell response to peripheral nerve injury.; J Neuroinflammation, 19: 105 |
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GSE177037 |
| Brouard, S et al. (2010) Comparative transcriptional and phenotypic peripheral blood analysis of kidney recipients under cyclosporin A or sirolimus monotherapy.; Am J Transplant, 10: 2604-14 |
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GSE22224 |
| Brousseau, Marine et al. (2020) MeCP2 is involved in random mono-allelic expression for a subset of human autosomal genes.; Biochim Biophys Acta Mol Basis Dis, 1866: 165730 |
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GSE140740 |
| Brouwers, Bas et al. (2014) Impaired islet function in commonly used transgenic mouse lines due to human growth hormone minigene expression.; Cell Metab, 20: 979-90 |
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GSE50851 |
| Brouwers, Bas et al. (2021) Loss ofFurinin β-Cells Induces an mTORC1-ATF4 Anabolic Pathway That Leads to β-Cell Dysfunction.; Diabetes, 70: 492-503 |
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GSE150312 |
| Browder, Kristen C et al. (2022) In vivo partial reprogramming alters age-associated molecular changes during physiological aging in mice.; Nat Aging, 2: 243-253 |
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GSE190983 GSE190984 GSE190985 |
| Brown, Ashley S et al. (2021) Intrauterine Growth Restriction Causes Abnormal Embryonic Dentate Gyrus Neurogenesis in Mouse Offspring That Leads to Adult Learning and Memory Deficits.; eNeuro, 8: [no pages] |
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GSE173845 |
| Brown, Christine E et al. (2013) Glioma IL13R?2 is associated with mesenchymal signature gene expression and poor patient prognosis.; PLoS One, 8: e77769 |
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GSE40904 |
| Brown, Elizabeth J et al. (2024) PRMT5 inhibition shows in vitro efficacy against H3K27M-altered diffuse midline glioma, but does not extend survival in vivo.; Sci Rep, 14: 328 |
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GSE230065 |
| Brown, Fiona C et al. (2018) MEF2C Phosphorylation Is Required for Chemotherapy Resistance in Acute Myeloid Leukemia.; Cancer Discov, 8: 478-497 |
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GSE94453 |
| Brown, Jacob D et al. (2009) Expression profiling during ocular development identifies 2 Nlz genes with a critical role in optic fissure closure.; Proc Natl Acad Sci U S A, 106: 1462-7 |
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GSE13103 |
| Brown, Jacquelyn A et al. (2023) Rescue of Impaired Blood-Brain Barrier in Tuberous Sclerosis Complex Patient Derived Neurovascular Unit.; bioRxiv, [no vol.]: [no pages] |
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GSE235862 |
| Brown, Jonathan D et al. (2014) NF-κB directs dynamic super enhancer formation in inflammation and atherogenesis.; Mol Cell, 56: 219-231 |
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GSE53999 |
| Brown, Joseph N et al. (2008) HIV-1 activates macrophages independent of Toll-like receptors.; PLoS One, 3: e3664 |
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GSE13395 |
| Brown, LaShardai N et al. (2022) Complement factor B is essential for the proper function of the peripheral auditory system.; Front Neurol, 14: 1214408 |
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GSE182417 |
| Brown, Vanessa M et al. (2002) Multiplex three-dimensional brain gene expression mapping in a mouse model of Parkinson's disease.; Genome Res, 12: 868-84 |
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GSE30 |
| Browne, Caleb J et al. (2023) Transcriptional signatures of heroin intake and relapse throughout the brain reward circuitry in male mice.; Sci Adv, 9: eadg8558 |
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GSE228031.2 GSE228031.1 |
| Browne, E P et al. (2001) Altered cellular mRNA levels in human cytomegalovirus-infected fibroblasts: viral block to the accumulation of antiviral mRNAs.; J Virol, 75: 12319-30 |
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GSE675 |
| Brownell, Isaac et al. (2011) Nerve-derived sonic hedgehog defines a niche for hair follicle stem cells capable of becoming epidermal stem cells.; Cell Stem Cell, 8: 552-65 |
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GSE28108 |
| Browning, Rebekah L et al. (2016) Lenalidomide Induces Interleukin-21 Production by T Cells and Enhances IL21-Mediated Cytotoxicity in Chronic Lymphocytic Leukemia B Cells.; Cancer Immunol Res, 4: 698-707 |
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GSE79660 |
| Brownjohn, Philip W et al. (2018) Functional Studies of Missense TREM2 Mutations in Human Stem Cell-Derived Microglia.; Stem Cell Reports, 10: 1294-1307 |
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GSE110952 |
| Brownstein, Bernard H et al. (2006) Commonality and differences in leukocyte gene expression patterns among three models of inflammation and injury.; Physiol Genomics, 24: 298-309 |
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GSE2278 |
| Broyl, Annemiek et al. (2010) Gene expression profiling for molecular classification of multiple myeloma in newly diagnosed patients.; Blood, 116: 2543-53 |
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GSE19784 |
| Broz, Miranda L et al. (2014) Dissecting the tumor myeloid compartment reveals rare activating antigen-presenting cells critical for T cell immunity.; Cancer Cell, 26: 638-52 |
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GSE61462 |
| Brozzi, Flora et al. (2024) tRNA-derived fragments in T lymphocyte-beta cell crosstalk and in type 1 diabetes pathogenesis in NOD mice.; Diabetologia, 67: 2260-2274 |
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GSE242561 |
| Broët, Philippe et al. (2009) Prediction of clinical outcome in multiple lung cancer cohorts by integrative genomics: implications for chemotherapy selection.; Cancer Res, 69: 1055-62 |
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GSE10445 |
| Bruch-Oms, Marina et al. (2023) Analyzing the role of cancer-associated fibroblast activation on macrophage polarization.; Mol Oncol, 17: 1492-1513 |
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GSE206404 |
| Brucklacher, Robert M et al. (2008) Whole genome assessment of the retinal response to diabetes reveals a progressive neurovascular inflammatory response.; BMC Med Genomics, 1: 26 |
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GSE11733 |
| Brudno, Roni et al. (2026) Histone H1 variants regulate neurodevelopmental transcriptional programs in autism with 16p11.2 deletion.; Genome Biol, [no vol.]: [no pages] |
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GSE292323.1 GSE292323.2 |
| Bruedigam, Claudia et al. (2023) Gene Expression Analyses in Models of Rosiglitazone-Induced Physiological and Pathological Mineralization Identify Novel Targets to Improve Bone and Vascular Health.; Cells, 12: [no pages] |
|
GSE67518 |
| Bruhn, Sören et al. (2014) A generally applicable translational strategy identifies S100A4 as a candidate gene in allergy.; Sci Transl Med, 6: 218ra4 |
|
GSE46333 |
| Brun, Yseult F et al. (2008) Simultaneous modeling of concentration-effect and time-course patterns in gene expression data from microarrays.; Cancer Genomics Proteomics, 5: 43-53 |
|
GSE8057 |
| Brune, Verena et al. (2008) Origin and pathogenesis of nodular lymphocyte-predominant Hodgkin lymphoma as revealed by global gene expression analysis.; J Exp Med, 205: 2251-68 |
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GSE12453 |
| Brunner, Alayne L et al. (2014) A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions.; Genome Biol, 15: R71 |
|
GSE47462 |
| Bruno, Gennaro et al. (2023) β3-adrenergic receptor on tumor-infiltrating lymphocytes sustains IFN-γ-dependent PD-L1 expression and impairs anti-tumor immunity in neuroblastoma.; Cancer Gene Ther, 30: 890-904 |
|
GSE209634 |
| Bruno, Ivone G et al. (2011) Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay.; Mol Cell, 42: 500-10 |
|
GSE28889 |
| Bruns, I et al. (2009) The hematopoietic stem cell in chronic phase CML is characterized by a transcriptional profile resembling normal myeloid progenitor cells and reflecting loss of quiescence.; Leukemia, 23: 892-9 |
|
GSE11889 |
| Bruns, Ingmar et al. (2012) Multiple myeloma-related deregulation of bone marrow-derived CD34(+) hematopoietic stem and progenitor cells.; Blood, 120: 2620-30 |
|
GSE24870 |
| Bröhl, Dominique et al. (2012) Colonization of the satellite cell niche by skeletal muscle progenitor cells depends on Notch signals.; Dev Cell, 23: 469-81 |
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GSE39379 |
| Bröske, Ann-Marie et al. (2009) DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction.; Nat Genet, 41: 1207-15 |
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GSE17765.2 |
| Brīvība, Monta et al. (2023) Metformin targets intestinal immune system signaling pathways in a high-fat diet-induced mouse model of obesity and insulin resistance.; Front Endocrinol (Lausanne), 14: 1232143 |
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GSE240206 |