List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Brunskill, Eric W et al. (2011) Defining the molecular character of the developing and adult kidney podocyte.; PLoS One, 6: e24640 |
|
GSE17218 |
| Brunskill, Eric W et al. (2014) A gene expression atlas of early craniofacial development.; Dev Biol, 391: 133-46 |
|
GSE55964 GSE55966 |
| Brunskill, Eric W et al. (2014) Single cell dissection of early kidney development: multilineage priming.; Development, 141: 3093-101 |
|
GSE64959 |
| Bruttger, Julia et al. (2015) Genetic Cell Ablation Reveals Clusters of Local Self-Renewing Microglia in the Mammalian Central Nervous System.; Immunity, 43: 92-106 |
|
GSE68376 |
| Bruveris, Freya F et al. (2020) Human yolk sac-like haematopoiesis generatesRUNX1-,GFI1-and/orGFI1B-dependent blood andSOX17-positive endothelium.; Development, 147: [no pages] |
|
GSE124084 |
| Bryan, Elana et al. (2025) Nucleosomal asymmetry shapes histone mark binding and promotes poising at bivalent domains.; Mol Cell, 85: 471-489.e12 |
|
GSE250570 |
| Bryant, C D et al. (2012) Congenic dissection of a major QTL for methamphetamine sensitivity implicates epistasis.; Genes Brain Behav, 11: 623-32 |
|
GSE35139 |
| Bryant, Camron D et al. (2019) C57BL/6 substrain differences in inflammatory and neuropathic nociception and genetic mapping of a major quantitative trait locus underlying acute thermal nociception.; Mol Pain, 15: 1744806918825046 |
|
GSE119719 |
| Bryant, Carson J et al. (2024) Discovery of novel microRNA mimic repressors of ribosome biogenesis.; Nucleic Acids Res, 52: 1988-2011 |
|
GSE242754 |
| Bryce-Smith, Sam et al. (2025) TDP-43 loss induces cryptic polyadenylation in ALS/FTD.; Nat Neurosci, 28: 2190-2200 |
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GSE296710 GSE296714 GSE296711 GSE296712 GSE296713 |
| Brykczynska, Urszula et al. (2020) Distinct Transcriptional Responses across Tissue-Resident Macrophages to Short-Term and Long-Term Metabolic Challenge.; Cell Rep, 30: 1627-1643.e7 |
|
GSE133127 |
| Brylka, Laura J et al. (2017) Post-weaning epiphysiolysis causes distal femur dysplasia and foreshortened hindlimbs in fetuin-A-deficient mice.; PLoS One, 12: e0187030 |
|
GSE105139 |
| Brüstle, Anne et al. (2012) The NF-?B regulator MALT1 determines the encephalitogenic potential of Th17 cells.; J Clin Invest, 122: 4698-709 |
|
GSE40931 |
| Bu, Angel et al. (2025) Actuating Extracellular Matrices Decouple the Mechanical and Biochemical Effects of Muscle Contraction on Motor Neurons.; Adv Healthc Mater, 14: e2403712 |
|
GSE257540 GSE281241 |
| Bu, Dawei et al. (2013) Identification of breast cancer DNA methylation markers optimized for fine-needle aspiration samples.; Cancer Epidemiol Biomarkers Prev, 22: 2212-21 |
|
GSE41692 |
| Bubak, Andrew N et al. (2022) Targeted RNA Sequencing of VZV-Infected Brain Vascular Adventitial Fibroblasts Indicates That Amyloid May Be Involved in VZV Vasculopathy.; Neurol Neuroimmunol Neuroinflamm, 9: [no pages] |
|
GSE175797 |
| Buchacher, Tanja et al. (2023) PIM kinases regulate early human Th17 cell differentiation.; Cell Rep, 42: 113469 |
|
GSE231650 |
| Bucher, Philip et al. (2020) Targeting chronic NFAT activation with calcineurin inhibitors in diffuse large B-cell lymphoma.; Blood, 135: 121-132 |
|
GSE140882 |
| Buchholz, David E et al. (2020) Novel genetic features of human and mouse Purkinje cell differentiation defined by comparative transcriptomics.; Proc Natl Acad Sci U S A, 117: 15085-15095 |
|
GSE140299 GSE140306 |
| Buchl, Samuel C et al. (2025) Delayed atorvastatin delivery promotes recovery after experimental spinal cord injury.; Neurotherapeutics, 22: e00517 |
|
GSE271662 |
| Buchner, David A et al. (2015) Zinc finger protein 407 (ZFP407) regulates insulin-stimulated glucose uptake and glucose transporter 4 (Glut4) mRNA.; J Biol Chem, 290: 6376-86 |
|
GSE64757 |
| Buchstaller, Johanna et al. (2004) Efficient isolation and gene expression profiling of small numbers of neural crest stem cells and developing Schwann cells.; J Neurosci, 24: 2357-65 |
|
GSE972 |
| Buchwalter, Gilles et al. (2013) PDEF promotes luminal differentiation and acts as a survival factor for ER-positive breast cancer cells.; Cancer Cell, 23: 753-67 |
|
GSE40986 GSE40985 |
| Buckberry, Sam et al. (2017) Placental transcriptome co-expression analysis reveals conserved regulatory programs across gestation.; BMC Genomics, 18: 10 |
|
GSE77085 |
| Buckle, Adam et al. (2018) Polymer Simulations of Heteromorphic Chromatin Predict the 3D Folding of Complex Genomic Loci.; Mol Cell, 72: 786-797.e11 |
|
GSE119660 |
| Buckley, Shannon M et al. (2012) Regulation of pluripotency and cellular reprogramming by the ubiquitin-proteasome system.; Cell Stem Cell, 11: 783-98 |
|
GSE39772 |
| Budczies, Jan et al. (2011) Genome-wide gene expression profiling of formalin-fixed paraffin-embedded breast cancer core biopsies using microarrays.; J Histochem Cytochem, 59: 146-57 |
|
GSE11001 |
| Buechel, Heather M et al. (2011) Deep sleep and parietal cortex gene expression changes are related to cognitive deficits with age.; PLoS One, 6: e18387 |
|
GSE24515 |
| Buecker, Christa et al. (2014) Reorganization of enhancer patterns in transition from naive to primed pluripotency.; Cell Stem Cell, 14: 838-53 |
|
GSE56096 |
| Buettner, Victoria L et al. (2005) Novel paternally expressed intergenic transcripts at the mouse Prader-Willi/Angelman Syndrome locus.; Mamm Genome, 16: 219-27 |
|
GSE12230 GSE12227 |
| Buffault, J et al. (2024) RNA-seq transcriptomic profiling of TGF-β2-exposed human trabecular meshwork explants: Advancing insights beyond conventional cell culture models.; Exp Cell Res, 442: 114220 |
|
GSE236302 |
| Buga, Ana Maria et al. (2014) Transcriptomics of post-stroke angiogenesis in the aged brain.; Front Aging Neurosci, 6: 44 |
|
GSE55260 |
| Buganim, Yosef et al. (2014) The developmental potential of iPSCs is greatly influenced by reprogramming factor selection.; Cell Stem Cell, 15: 295-309 |
|
GSE45173 |
| Bugge, Anne et al. (2009) The PPARgamma2 A/B-domain plays a gene-specific role in transactivation and cofactor recruitment.; Mol Endocrinol, 23: 794-808 |
|
GSE15433 |
| Buggele, William A et al. (2013) MicroRNA profiling of Sendai virus-infected A549 cells identifies miR-203 as an interferon-inducible regulator of IFIT1/ISG56.; J Virol, [no vol.]: [no pages] |
|
GSE47866 GSE47865 |
| Buick, Julie K et al. (2015) Integration of metabolic activation with a predictive toxicogenomics signature to classify genotoxic versus nongenotoxic chemicals in human TK6 cells.; Environ Mol Mutagen, 56: 520-34 |
|
GSE68855 |
| Buick, Julie K et al. (2022) Integrated Genotoxicity Testing of three anti-infective drugs using the TGx-DDI transcriptomic biomarker and high-throughput CometChip®assay in TK6 cells.; Front Toxicol, 4: 991590 |
|
GSE196372 |
| Bujor, Andreea M et al. (2020) Fli1 Downregulation in Scleroderma Myeloid Cells Has Profibrotic and Proinflammatory Effects.; Front Immunol, 11: 800 |
|
GSE144625 |
| Bukowski, Radek et al. (2017) Onset of human preterm and term birth is related to unique inflammatory transcriptome profiles at the maternal fetal interface.; PeerJ, 5: e3685 |
|
GSE73685 |
| Bulajić, Milica et al. (2020) Differential abilities to engage inaccessible chromatin diversify vertebrate Hox binding patterns.; Development, 147: [no pages] |
|
GSE142378 |
| Bull, Daniel et al. (2024) The hypermorphic PLCγ2 S707Y variant dysregulates microglial cell function - Insight into PLCγ2 activation in brain health and disease, and opportunities for therapeutic modulation.; Biochim Biophys Acta Mol Basis Dis, 1870: 166978 |
|
GSE227513 |
| Bull, Todd M et al. (2004) Gene microarray analysis of peripheral blood cells in pulmonary arterial hypertension.; Am J Respir Crit Care Med, 170: 911-9 |
|
GSE703 |
| Bullert, Amanda J et al. (2024) Effects of 28-day nose-only inhalation of PCB52 (2,2',5,5'-Tetrachlorobiphenyl) on the brain transcriptome.; Toxicology, 509: 153965 |
|
GSE246555 |
| Bullert, Amanda J et al. (2024) Interactions of Polychlorinated Biphenyls and Their Metabolites with the Brain and Liver Transcriptome of Female Mice.; ACS Chem Neurosci, 15: 3991-4009 |
|
GSE252621 |
| Bundy, Joseph L et al. (2017) Sex differences in the molecular signature of the developing mouse hippocampus.; BMC Genomics, 18: 237 |
|
GSE83931 |
| Bundy, Joseph L et al. (2019) Sex-biased hippocampal pathology in the 5XFAD mouse model of Alzheimer's disease: A multi-omic analysis.; J Comp Neurol, 527: 462-475 |
|
GSE97113 |
| Bunt, Jens et al. (2012) OTX2 directly activates cell cycle genes and inhibits differentiation in medulloblastoma cells.; Int J Cancer, 131: E21-32 |
|
GSE22875 |
| Bunt, Jens et al. (2016) Combined allelic dosage ofNfiaandNfibregulates cortical development.; Brain Neurosci Adv, 1: 2398212817739433 |
|
GSE93604 |
| Buonamici, Silvia et al. (2010) Interfering with resistance to smoothened antagonists by inhibition of the PI3K pathway in medulloblastoma.; Sci Transl Med, 2: 51ra70 |
|
GSE22007 |
| Buqué, Aitziber et al. (2020) Immunoprophylactic and immunotherapeutic control of hormone receptor-positive breast cancer.; Nat Commun, 11: 3819 |
|
GSE151197 GSE150967 GSE150966 |
| Burban, Audrey et al. (2024) Targeting glioblastoma with a brain-penetrant drug that impairs brain tumor stem cells via NLE1-Notch1 complex.; Stem Cell Reports, 19: 1534-1547 |
|
GSE261132 |
| Burban, Audrey et al. (2025) Exploiting metabolic vulnerability in glioblastoma using a brain-penetrant drug with a safe profile.; EMBO Mol Med, 17: 469-503 |
|
GSE284766 GSE253362 |
| Burczynski, Michael E et al. (2006) Molecular classification of Crohn's disease and ulcerative colitis patients using transcriptional profiles in peripheral blood mononuclear cells.; J Mol Diagn, 8: 51-61 |
|
GSE3365 |
| Burda, Joshua E et al. (2022) Divergent transcriptional regulation of astrocyte reactivity across disorders.; Nature, [no vol.]: [no pages] |
|
GSE199149 |
| Burdach, Stefan et al. (2009) Epigenetic maintenance of stemness and malignancy in peripheral neuroectodermal tumors by EZH2.; Cell Cycle, 8: 1991-6 |
|
GSE15890 |
| Burga, Laura N et al. (2009) Altered proliferation and differentiation properties of primary mammary epithelial cells from BRCA1 mutation carriers.; Cancer Res, 69: 1273-8 |
|
GSE13671 |
| Burger, Corinna et al. (2007) Changes in transcription within the CA1 field of the hippocampus are associated with age-related spatial learning impairments.; Neurobiol Learn Mem, 87: 21-41 |
|
GSE3531 |
| Burger, Corinna et al. (2008) Genome-wide analysis of aging and learning-related genes in the hippocampal dentate gyrus.; Neurobiol Learn Mem, 89: 379-96 |
|
GSE4821 |
| Burger, Jan A et al. (2009) High-level expression of the T-cell chemokines CCL3 and CCL4 by chronic lymphocytic leukemia B cells in nurselike cell cocultures and after BCR stimulation.; Blood, 113: 3050-8 |
|
GSE13811 |
| Burger, Laura L et al. (2018) Identification of Genes Enriched in GnRH Neurons by Translating Ribosome Affinity Purification and RNAseq in Mice.; Endocrinology, 159: 1922-1940 |
|
GSE110042 |
| Burgess-Herbert, Sarah L et al. (2008) Practical applications of the bioinformatics toolbox for narrowing quantitative trait loci.; Genetics, 180: 2227-35 |
|
GSE10493 |
| Burington, Bart et al. (2008) Tumor cell gene expression changes following short-term in vivo exposure to single agent chemotherapeutics are related to survival in multiple myeloma.; Clin Cancer Res, 14: 4821-9 |
|
GSE8546 |
| Burington, Bart et al. (2011) CD40 pathway activation status predicts response to CD40 therapy in diffuse large B cell lymphoma.; Sci Transl Med, 3: 74ra22 |
|
GSE18376 GSE18377 |
| Burks, Hope E et al. (2023) Melanoma cells repress Desmoglein 1 in keratinocytes to promote tumor cell migration.; J Cell Biol, 222: [no pages] |
|
GSE239634 |
| Burleigh, Annika et al. (2012) Joint immobilization prevents murine osteoarthritis and reveals the highly mechanosensitive nature of protease expression in vivo.; Arthritis Rheum, 64: 2278-88 |
|
GSE26475 |
| Burmeister, Amanda R et al. (2022) Maternal Herpesviridae infection during pregnancy alters midbrain dopaminergic signatures in adult offspring.; Neurobiol Dis, 169: 105720 |
|
GSE162566 |
| Burnett, Lisa C et al. (2017) Deficiency in prohormone convertase PC1 impairs prohormone processing in Prader-Willi syndrome.; J Clin Invest, 127: 293-305 |
|
GSE89991 |
| Burnett, Ryan et al. (2006) DNA sequence-specific polyamides alleviate transcription inhibition associated with long GAA.TTC repeats in Friedreich's ataxia.; Proc Natl Acad Sci U S A, 103: 11497-502 |
|
GSE5040 |
| Burney, Matthew J et al. (2013) An epigenetic signature of developmental potential in neural stem cells and early neurons.; Stem Cells, 31: 1868-80 |
|
GSE46791 |
| Burney, Richard O et al. (2007) Gene expression analysis of endometrium reveals progesterone resistance and candidate susceptibility genes in women with endometriosis.; Endocrinology, [no vol.]: [no pages] |
|
GSE6364 |
| Burnight, Erin R et al. (2023) CRISPRi-Mediated Treatment of Dominant Rhodopsin-Associated Retinitis Pigmentosa.; CRISPR J, 6: 502-513 |
|
GSE244786 |
| Burns, Allison M et al. (2022) The HDAC inhibitor CI-994 acts as a molecular memory aid by facilitating synaptic and intracellular communication after learning.; Proc Natl Acad Sci U S A, 119: e2116797119 |
|
GSE185454 GSE185453 |
| Burns, Fredric J et al. (2002) The action of a dietary retinoid on gene expression and cancer induction in electron-irradiated rat skin.; J Radiat Res, 43 Suppl: S229-32 |
|
GSE284 |
| Buroker, Norman E et al. (2007) The dominant negative thyroid hormone receptor beta-mutant {Delta}337T alters PPAR{alpha} signaling in heart.; Am J Physiol Endocrinol Metab, 292: E453-60 |
|
GSE3067 |
| Burrack, Kristina S et al. (2018) Interleukin-15 Complex Treatment Protects Mice from Cerebral Malaria by Inducing Interleukin-10-Producing Natural Killer Cells.; Immunity, 48: 760-772.e4 |
|
GSE109586 |
| Burri, Lena et al. (2011) Differential effects of krill oil and fish oil on the hepatic transcriptome in mice.; Front Genet, 2: 45 |
|
GSE29572 |
| Burt, Philipp et al. (2021) Dissecting the dynamic transcriptional landscape of early T helper cell differentiation into Th1, Th2, and Th1/2 hybrid cells.; Front Immunol, 13: 928018 |
|
GSE200250 |
| Burton, Mark A et al. (2020) Folic Acid Induces Intake-Related Changes in the Mammary Tissue Transcriptome of C57BL/6 Mice.; Nutrients, 12: [no pages] |
|
GSE153732 |
| Burton, Matthew J et al. (2011) Conjunctival transcriptome in scarring trachoma.; Infect Immun, 79: 499-511 |
|
GSE23705 |
| Bury, Joanna J et al. (2021) Type 2 diabetes mellitus-associated transcriptome alterations in cortical neurones and associated neurovascular unit cells in the ageing brain.; Acta Neuropathol Commun, 9: 5 |
|
GSE161355 |
| Burzyn, Dalia et al. (2013) A special population of regulatory T cells potentiates muscle repair.; Cell, 155: 1282-95 |
|
GSE50096 GSE50097 |
| Busch, Albert et al. (2021) Lenvatinib halts aortic aneurysm growth by restoring smooth muscle cell contractility.; JCI Insight, 6: [no pages] |
|
GSE226736 |
| Busch, Wibke et al. (2010) Tungsten carbide cobalt nanoparticles exert hypoxia-like effects on the gene expression level in human keratinocytes.; BMC Genomics, 11: 65 |
|
GSE16727 |
| Bünger, Meike et al. (2007) Genome-wide analysis of PPARalpha activation in murine small intestine.; Physiol Genomics, [no vol.]: [no pages] |
|
GSE5475 |