List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Bush, Erin C et al. (2017) PLATE-Seq for genome-wide regulatory network analysis of high-throughput screens.; Nat Commun, 8: 105 |
|
GSE97460 |
| Bush, Kelly et al. (2023) A knockout-first model of H3f3a gene targeting leads to developmental lethality.; Genesis, [no vol.]: e23507 |
|
GSE216047 |
| Bushel, P R et al. (2007) Blood gene expression signatures predict exposure levels.; Proc Natl Acad Sci U S A, 104: 18211-6 |
|
GSE5593 |
| Busskamp, Volker et al. (2010) Genetic reactivation of cone photoreceptors restores visual responses in retinitis pigmentosa.; Science, 329: 413-7 |
|
GSE22338 |
| Busskamp, Volker et al. (2014) miRNAs 182 and 183 are necessary to maintain adult cone photoreceptor outer segments and visual function.; Neuron, 83: 586-600 |
|
GSE58498 |
| Busskamp, Volker et al. (2014) Rapid neurogenesis through transcriptional activation in human stem cells.; Mol Syst Biol, 10: 760 |
|
GSE60548 GSE62146 |
| Bussolati, Gianni et al. (2011) Formalin fixation at low temperature better preserves nucleic acid integrity.; PLoS One, 6: e21043 |
|
GSE27175 |
| Bussotti, Giovanni et al. (2016) Improved definition of the mouse transcriptome via targeted RNA sequencing.; Genome Res, 26: 705-16 |
|
GSE72311 |
| Bustamante, Angela C et al. (2020) Transcriptomic Profiles of Sepsis in the Human Brain.; Am J Respir Crit Care Med, [no vol.]: [no pages] |
|
GSE135838 |
| Bustos, Francisco et al. (2020) Functional Diversification of SRSF Protein Kinase to Control Ubiquitin-Dependent Neurodevelopmental Signaling.; Dev Cell, 55: 629-647.e7 |
|
GSE149554 |
| Bustos, Matias A et al. (2017) Genome-wide chromatin accessibility, DNA methylation and gene expression analysis of histone deacetylase inhibition in triple-negative breast cancer.; Genom Data, 12: 14-16 |
|
GSE92910 |
| Busuttil, Rita A et al. (2014) A signature predicting poor prognosis in gastric and ovarian cancer represents a coordinated macrophage and stromal response.; Clin Cancer Res, 20: 2761-72 |
|
GSE51105 |
| Butchar, Jonathan P et al. (2008) Microarray analysis of human monocytes infected with Francisella tularensis identifies new targets of host response subversion.; PLoS One, 3: e2924 |
|
GSE12108 |
| Butcher, Matthew J et al. (2023) GATA3 induces the pathogenicity of Th17 cells via regulating GM-CSF expression.; Front Immunol, 14: 1186580 |
|
GSE227394 |
| Buth, Jessie E et al. (2024) Foxp1 suppresses cortical angiogenesis and attenuates HIF-1alpha signaling to promote neural progenitor cell maintenance.; EMBO Rep, 25: 2202-2219 |
|
GSE217364 |
| Butler Iii, Robert R et al. (2020) The Genetic Relevance of Human Induced Pluripotent Stem Cell-Derived Microglia to Alzheimer's Disease and Major Neuropsychiatric Disorders.; Mol Neuropsychiatry, 5: 85-96 |
|
GSE129630 |
| Butler Tjaden, Naomi E et al. (2026) Retinol dehydrogenase 10-mediated retinoic acid signaling regulates the neural crest cell microenvironment during enteric nervous system formation.; Hum Mol Genet, 35: [no pages] |
|
GSE166625 |
| Butler, Michael J et al. (2023) CD8+T cells contribute to diet-induced memory deficits in aged male rats.; Brain Behav Immun, 109: 235-250 |
|
GSE223802 |
| Butovsky, Oleg et al. (2014) Identification of a unique TGF-?-dependent molecular and functional signature in microglia.; Nat Neurosci, 17: 131-43 |
|
GSE48579.3 |
| Butovsky, Oleg et al. (2015) Targeting miR-155 restores abnormal microglia and attenuates disease in SOD1 mice.; Ann Neurol, 77: 75-99 |
|
GSE52946 |
| Butt, Umer Javed et al. (2021) Hippocampal neurons respond to brain activity with functional hypoxia.; Mol Psychiatry, 26: 1790-1807 |
|
GSE162079 |
| Butte, A J et al. (2000) Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks.; Proc Natl Acad Sci U S A, 97: 12182-6 |
|
butte-relevance |
| Butti, Erica et al. (2022) Neural precursor cells tune striatal connectivity through the release of IGFBPL1.; Nat Commun, 13: 7579 |
|
GSE165815 |
| Butto, Tamer et al. (2024) Characterization of transcriptional profiles associated with stress-induced neuronal activation in Arc-GFP mice.; Mol Psychiatry, 29: 3010-3023 |
|
GSE240573 |
| Buus, Terkild B et al. (2016) The major diversification of V?1.1(+) and V?2(+) thymocytes in mice occurs after commitment to the ?? T-cell lineage.; Eur J Immunol, [no vol.]: [no pages] |
|
GSE75920 |
| Buyandelger, Byambajav et al. (2015) ZBTB17 (MIZ1) Is Important for the Cardiac Stress Response and a Novel Candidate Gene for Cardiomyopathy and Heart Failure.; Circ Cardiovasc Genet, 8: 643-52 |
|
GSE50638 |
| Buzzeo, Matthew P et al. (2007) Hematopoietic stem cell mobilization with G-CSF induces innate inflammation yet suppresses adaptive immune gene expression as revealed by microarray analysis.; Exp Hematol, 35: 1456-65 |
|
GSE7400 |
| Buzzi, Raphael M et al. (2021) Spatial transcriptome analysis defines heme as a hemopexin-targetable inflammatoxin in the brain.; Free Radic Biol Med, [no vol.]: [no pages] |
|
GSE182127 |
| Bye, Anja et al. (2008) Gene expression profiling of skeletal muscle in exercise-trained and sedentary rats with inborn high and low VO2max.; Physiol Genomics, 35: 213-21 |
|
GSE10527 |
| Bye, Chris R et al. (2015) Transcriptome analysis reveals transmembrane targets on transplantable midbrain dopamine progenitors.; Proc Natl Acad Sci U S A, 112: E1946-55 |
|
GSE65094 |
| Bye, Christopher R et al. (2025) Large-scale drug screening in iPSC-derived motor neurons from sporadic ALS patients identifies a potential combinatorial therapy.; Nat Neurosci, 29: 40-52 |
|
GSE309506 |
| Byers, Lauren Averett et al. (2013) An epithelial-mesenchymal transition gene signature predicts resistance to EGFR and PI3K inhibitors and identifies Axl as a therapeutic target for overcoming EGFR inhibitor resistance.; Clin Cancer Res, 19: 279-90 |
|
GSE32036 GSE32989 GSE33072 |
| Bykhovskaya, Yelena et al. (2009) Phenotypic expression of maternally inherited deafness is affected by RNA modification and cytoplasmic ribosomal proteins.; Mol Genet Metab, 97: 297-304 |
|
GSE9822 |
| Byles, Vanessa et al. (2021) Hepatic mTORC1 signaling activates ATF4 as part of its metabolic response to feeding and insulin.; Mol Metab, 53: 101309 |
|
GSE173578 |
| Byrd, Gabrielle et al. (2025) Assessing the effects of silver nanoparticles on ARPE-19 cells via high-throughput phenotypic profiling with the Cell Painting assay.; Toxicol Appl Pharmacol, 502: 117444 |
|
GSE297342 |
| Byrne, Nikole J et al. (2025) Cardiomyocyte-Specific Deletion of Sirtuin 5 Accelerates the Development of Heart Failure Upon Dysregulating Purine Metabolism.; Acta Physiol (Oxf), 241: e70120 |
|
GSE280863 |
| Byrnes, Amy E et al. (2023) Lipid nanoparticle delivery limits antisense oligonucleotide activity and cellular distribution in the brain after intracerebroventricular injection.; Mol Ther Nucleic Acids, 32: 773-793 |
|
GSE220777 |
| Byrnes, Andrea et al. (2009) Gene expression in peripheral blood leukocytes in monozygotic twins discordant for chronic fatigue: no evidence of a biomarker.; PLoS One, 4: e5805 |
|
GSE16059 |
| Bystrykh, Leonid et al. (2005) Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.; Nat Genet, 37: 225-32 |
|
GSE2031 |
| Byun, Jeong Su et al. (2020) The transcription factor PITX1 drives astrocyte differentiation by regulating the SOX9 gene.; J Biol Chem, 295: 13677-13690 |
|
GSE153054 |
| Byun, Youkyeong Gloria et al. (2023) Stress induces behavioral abnormalities by increasing expression of phagocytic receptor MERTK in astrocytes to promote synapse phagocytosis.; Immunity, 56: 2105-2120.e13 |
|
GSE234945 |
| Bøstrand, Sunniva M K et al. (2024) Mapping the glial transcriptome in Huntington's disease using snRNAseq: selective disruption of glial signatures across brain regions.; Acta Neuropathol Commun, 12: 165 |
|
GSE281069.4 GSE281069.1 GSE281069.2 GSE281069.3 |
| Büttner, Petra et al. (2007) Exercise affects the gene expression profiles of human white blood cells.; J Appl Physiol (1985), 102: 26-36 |
|
GSE3606 |
| Büttner, Robert et al. (2018) Inflammaging impairs peripheral nerve maintenance and regeneration.; Aging Cell, 17: e12833 |
|
GSE137504 |
| Caba, Octavio et al. (2014) Transcriptional profiling of peripheral blood in pancreatic adenocarcinoma patients identifies diagnostic biomarkers.; Dig Dis Sci, 59: 2714-20 |
|
GSE49641 |
| Cabeza-Arvelaiz, Yofre et al. (2012) Transcriptome analysis of a rotenone model of parkinsonism reveals complex I-tied and -untied toxicity mechanisms common to neurodegenerative diseases.; PLoS One, 7: e44700 |
|
GSE35642 |
| Cabili, Moran N et al. (2011) Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.; Genes Dev, 25: 1915-27 |
|
GSE30554 |
| Caboux, Elodie et al. (2012) Impact of delay to cryopreservation on RNA integrity and genome-wide expression profiles in resected tumor samples.; PLoS One, 8: e79826 |
|
GSE41160 |
| Cabrera, Robert M et al. (2012) Transcriptional analyses of two mouse models of spina bifida.; Birth Defects Res A Clin Mol Teratol, 94: 782-9 |
|
GSE25975 GSE25974 |
| Cabrera, Susanne M et al. (2022) Probiotic normalization of systemic inflammation in siblings of type 1 diabetes patients: an open-label pilot study.; Sci Rep, 12: 3306 |
|
GSE162622 |
| Cabrera-Aldana, Eibar E et al. (2023) Administration of Tamoxifen Can Regulate Changes in Gene Expression during the Acute Phase of Traumatic Spinal Cord Injury.; Curr Issues Mol Biol, 45: 7476-7491 |
|
GSE229618 |
| Cabrera-Mendoza, Brenda et al. (2019) Brain Gene Expression Profiling of Individuals With Dual Diagnosis Who Died by Suicide.; J Dual Diagn, [no vol.]: 1-14 |
|
GSE125681 |
| Cabrera-Reyes, Erika Alejandra et al. (2019) Transcriptomic analysis reveals new hippocampal gene networks induced by prolactin.; Sci Rep, 9: 13765 |
|
GSE119435 |
| Cadet, Jean Lud et al. (2009) Methamphetamine preconditioning alters midbrain transcriptional responses to methamphetamine-induced injury in the rat striatum.; PLoS One, 4: e7812 |
|
GSE17665 |
| Cadet, Jean Lud et al. (2010) Methamphetamine-induced dopamine-independent alterations in striatal gene expression in the 6-hydroxydopamine hemiparkinsonian rats.; PLoS One, 5: e15643 |
|
GSE24233 |
| Cadet, Jean Lud et al. (2016) Increased expression of proenkephalin and prodynorphin mRNAs in the nucleus accumbens of compulsive methamphetamine taking rats.; Sci Rep, 6: 37002 |
|
GSE86329 |
| Caesar, Robert et al. (2015) Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling.; Cell Metab, 22: 658-68 |
|
GSE70922 |
| Caesar, Robert et al. (2016) Interaction between dietary lipids and gut microbiota regulates hepatic cholesterol metabolism.; J Lipid Res, 57: 474-81 |
|
GSE73195 |
| Caescu, Cristina I et al. (2015) Colony stimulating factor-1 receptor signaling networks inhibit mouse macrophage inflammatory responses by induction of microRNA-21.; Blood, 125: e1-13 |
|
GSE62630 |
| Caescu, Cristina I et al. (2021) Inhibition of HIPK2 Alleviates Thoracic Aortic Disease in Mice With Progressively Severe Marfan Syndrome.; Arterioscler Thromb Vasc Biol, 41: 2483-2493 |
|
GSE145903.2 GSE145903.1 |
| Caetano-Anollés, Kelsey et al. (2015) Synergistic and antagonistic interplay between myostatin gene expression and physical activity levels on gene expression patterns in triceps Brachii muscles of C57/BL6 mice.; PLoS One, 10: e0116828 |
|
GSE31839 |
| Caetano-Anollés, Kelsey et al. (2016) Cerebellum Transcriptome of Mice Bred for High Voluntary Activity Offers Insights into Locomotor Control and Reward-Dependent Behaviors.; PLoS One, 11: e0167095 |
|
GSE84208 |
| Caffrey, Daniel R et al. (2011) siRNA off-target effects can be reduced at concentrations that match their individual potency.; PLoS One, 6: e21503 |
|
GSE28786.2 GSE28786.1 |
| Caglayan, Safak et al. (2020) Optic Atrophy 1 Controls Human Neuronal Development by Preventing Aberrant Nuclear DNA Methylation.; iScience, 23: 101154 |
|
GSE117976 |
| Cahill, Michael E et al. (2016) Bidirectional Synaptic Structural Plasticity after Chronic Cocaine Administration Occurs through Rap1 Small GTPase Signaling.; Neuron, 89: 566-82 |
|
GSE76868 |
| Cahoy, John D et al. (2008) A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function.; J Neurosci, 28: 264-78 |
|
GSE9566 |
| Cai, Anxiang et al. (2023) Dapagliflozin alleviates renal inflammation and protects against diabetic kidney diseases, both dependent and independent of blood glucose levels.; Front Immunol, 14: 1205834 |
|
GSE246576 |
| Cai, Benchi et al. (2023) Integrating Network Pharmacology, Transcriptomics to Reveal Neuroprotective of Curcumin Activate PI3K / AKT Pathway in Parkinson's Disease.; Drug Des Devel Ther, 18: 2869-2881 |
|
GSE243886 |
| Cai, Changmeng et al. (2013) ERG induces androgen receptor-mediated regulation of SOX9 in prostate cancer.; J Clin Invest, 123: 1109-22 |
|
GSE32269 |
| Cai, Hui et al. (2012) Effects of aging and anatomic location on gene expression in human retina.; Front Aging Neurosci, 4: 8 |
|
GSE32614 |
| Cai, Hui et al. (2019) High-throughput screening identifies compounds that protect RPE cells from physiological stressors present in AMD.; Exp Eye Res, 185: 107641 |
|
GSE149202 |
| Cai, Jing et al. (2023) AMPK attenuates SHH subgroup medulloblastoma growth and metastasis by inhibiting NF-κB activation.; Cell Biosci, 13: 15 |
|
GSE218076 |
| Cai, Jun et al. (2010) Modeling co-expression across species for complex traits: insights to the difference of human and mouse embryonic stem cells.; PLoS Comput Biol, 6: e1000707 |
|
GSE12550 |
| Cai, Junrong et al. (2024) The browning and mobilization of subcutaneous white adipose tissue supports efficient skin repair.; Cell Metab, 36: 1287-1301.e7 |
|
GSE247964 |
| Cai, Ling et al. (2018) ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer.; Mol Cell, 72: 341-354.e6 |
|
GSE94013 |
| Cai, Menghua et al. (2019) Profiling the Gene Expression and DNA Methylation in the Mouse Brain after Ischemic Preconditioning.; Neuroscience, 406: 249-261 |
|
GSE122107 |
| Cai, Sa et al. (2017) Directed Differentiation of Human Bone Marrow Stromal Cells to Fate-Committed Schwann Cells.; Stem Cell Reports, 9: 1097-1108 |
|
GSE102049 |
| Cai, Sun-Li et al. (2022) SETD4 cells contribute to brain development and maintain adult stem cell reservoir for neurogenesis.; Stem Cell Reports, 17: 2081-2096 |
|
GSE200159 |
| Cai, Ting et al. (2021) Deletion of RBMX RGG/RG motif in Shashi-XLID syndrome leads to aberrant p53 activation and neuronal differentiation defects.; Cell Rep, 36: 109337 |
|
GSE156923 |
| Cai, Wei et al. (2022) Neuroprotection against ischemic stroke requires a specific class of early responder T cells in mice.; J Clin Invest, 132: [no pages] |
|
GSE201054 |
| Cai, Weijuan et al. (2024) Empagliflozin improves mitochondrial dysfunction in diabetic cardiomyopathy by modulating ketone body metabolism and oxidative stress.; Redox Biol, 69: 103010 |
|
GSE173384 |
| Cai, Weikang et al. (2017) Domain-dependent effects of insulin and IGF-1 receptors on signalling and gene expression.; Nat Commun, 8: 14892 |
|
GSE81921 |
| Cai, Weikang et al. (2021) Peripheral Insulin Regulates a Broad Network of Gene Expression in Hypothalamus, Hippocampus, and Nucleus Accumbens.; Diabetes, 70: 1857-1873 |
|
GSE132352 |
| Cai, Wenjin et al. (2024) An Engineered Hierarchical Hydrogel with Immune Responsiveness and Targeted Mitochondrial Transfer to Augmented Bone Regeneration.; Adv Sci (Weinh), 11: e2406287 |
|
GSE239590 |
| Cai, Xiongwei et al. (2015) Runx1 Deficiency Decreases Ribosome Biogenesis and Confers Stress Resistance to Hematopoietic Stem and Progenitor Cells.; Cell Stem Cell, 17: 165-77 |
|
GSE67609 |
| Cai, Yi et al. (2014) Increased complement C1q level marks active disease in human tuberculosis.; PLoS One, 9: e92340 |
|
GSE54992 |
| Cai, Yu-Wen et al. (2024) MAP3K1 mutations confer tumor immune heterogeneity in hormone receptor-positive HER2-negative breast cancer.; J Clin Invest, 135: [no pages] |
|
GSE276527 |
| Cai, Yuanqing et al. (2024) The GDNF-gel/HA-Mg conduit promotes the repair of peripheral nerve defects by regulating PPAR-γ/RhoA/ROCK signaling pathway.; iScience, 27: 108969 |
|
GSE243282 |
| Cai, Zhangying et al. (2025) Loss of ATG7 in microglia impairs UPR, triggers ferroptosis, and weakens amyloid pathology control.; J Exp Med, 222: [no pages] |
|
GSE286094 |
| Cáceres, Mario et al. (2003) Elevated gene expression levels distinguish human from non-human primate brains.; Proc Natl Acad Sci U S A, 100: 13030-5 |
|
GSE7540.1 |
| Cáceres-Gutiérrez, Rodrigo E et al. (2021) Proteasome inhibition alters mitotic progression through the upregulation of centromeric α-Satellite RNAs.; FEBS J, [no vol.]: [no pages] |
|
GSE165325 |