List of all 16,752 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Chang, Lun-Ching et al. (2014) A conserved BDNF, glutamate- and GABA-enriched gene module related to human depression identified by coexpression meta-analysis and DNA variant genome-wide association studies.; PLoS One, 9: e90980 |
|
GSE54575 GSE54568 GSE54571 GSE54572 GSE54570 |
| Chang, Matthew L et al. (2019) Regulatory interaction between the ZPBP2-ORMDL3/Zpbp2-Ormdl3 region and the circadian clock.; PLoS One, 14: e0223212 |
|
GSE136233 GSE136232 |
| Chang, Meiping et al. (2010) Evaluation of phenoxybenzamine in the CFA model of pain following gene expression studies and connectivity mapping.; Mol Pain, 6: 56 |
|
GSE24431 |
| Chang, Michael C et al. (2017) Progranulin deficiency causes impairment of autophagy and TDP-43 accumulation.; J Exp Med, 214: 2611-2628 |
|
GSE78747 GSE78748 |
| Chang, Nydia P et al. (2023) Neuronal DAMPs exacerbate neurodegeneration via astrocytic RIPK3 signaling.; bioRxiv, [no vol.]: [no pages] |
|
GSE237891 |
| Chang, Richard C et al. (2021) Programmed suppression of oxidative phosphorylation and mitochondrial function by gestational alcohol exposure correlate with widespread increases in H3K9me2 that do not suppress transcription.; Epigenetics Chromatin, 14: 27 |
|
GSE163300 |
| Chang, Richard C et al. (2023) miR-223 Plays a Key Role in Obesogen-Enhanced Adipogenesis in Mesenchymal Stem Cells and in Transgenerational Obesity.; Endocrinology, 164: [no pages] |
|
GSE216429 |
| Chang, Stewart T et al. (2011) Next-generation sequencing reveals HIV-1-mediated suppression of T cell activation and RNA processing and regulation of noncoding RNA expression in a CD4+ T cell line.; MBio, 2: [no pages] |
|
GSE38006 |
| Chang, Tammy T et al. (2012) The Rel/NF-?B pathway and transcription of immediate early genes in T cell activation are inhibited by microgravity.; J Leukoc Biol, 92: 1133-45 |
|
GSE38836 |
| Chang, Ting-Ya et al. [Unknown date]Paxillin facilitates timely neurite initiation on soft-substrate environments by interacting with the endocytic machinery.; Elife, 6: [no pages] |
|
GSE102350 |
| Chang, Tong et al. (2023) Simulated vestibular spatial disorientation mouse model under coupled rotation revealing potential involvement of Slc17a6.; iScience, 26: 108498 |
|
GSE243471 |
| Chang, Wen-Chi L et al. (2023) Folic Acid Supplementation Promotes Hypomethylation in Both the Inflamed Colonic Mucosa and Colitis-Associated Dysplasia.; Cancers (Basel), 15: [no pages] |
|
GSE168525 |
| Chang, X et al. (2014) CD38 and E2F transcription factor 2 have uniquely increased expression in rheumatoid arthritis synovial tissues.; Clin Exp Immunol, 176: 222-231 |
|
GSE39340 |
| Chang, Yi-Cheng et al. (2022) Nr6a1 controls Hox expression dynamics and is a master regulator of vertebrate trunk development.; Nat Commun, 13: 7766 |
|
GSE180426 GSE179858 |
| Chang, Yun et al. (2024) SMYD1 modulates the proliferation of multipotent cardiac progenitor cells derived from human pluripotent stem cells during myocardial differentiation through GSK3β/β-catenin&ERK signaling.; Stem Cell Res Ther, 15: 350 |
|
GSE267824 |
| Chantzoura, Eleni et al. (2015) Reprogramming Roadblocks Are System Dependent.; Stem Cell Reports, 5: 350-64 |
|
GSE70816 |
| Chapman, Gareth et al. (2024) Defining cis-regulatory elements and transcription factors that control human cortical interneuron development.; iScience, 27: 109967 |
|
GSE239413 GSE239396 |
| Chapman, Joseph H et al. (2024) UPF1 ATPase autoinhibition and activation modulate RNA binding kinetics and NMD efficiency.; Nucleic Acids Res, 52: 5376-5391 |
|
GSE246483 GSE246484 |
| Chapman, Kimberly A et al. (2015) Gene expression in cell lines from propionic acidemia patients, carrier parents, and controls.; Mol Genet Metab, 115: 174-9 |
|
GSE42816 |
| Chapman, Michael A et al. (2018) RNA-seq of newly diagnosed patients in the PADIMAC study leads to a bortezomib/lenalidomide decision signature.; Blood, 132: 2154-2165 |
|
GSE116324 |
| Charbord, Jérémie et al. (2013) High throughput screening for inhibitors of REST in neural derivatives of human embryonic stem cells reveals a chemical compound that promotes expression of neuronal genes.; Stem Cells, 31: 1816-28 |
|
GSE40695 |
| Charbord, Pierre et al. (2014) A systems biology approach for defining the molecular framework of the hematopoietic stem cell niche.; Cell Stem Cell, 15: 376-91 |
|
GSE44181 |
| Chariker, Julia H et al. [Unknown date]Transcriptome of dorsal root ganglia caudal to a spinal cord injury with modulated behavioral activity.; Sci Data, 6: 83 |
|
GSE129704 |
| Charizanis, Konstantinos et al. (2012) Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy.; Neuron, 75: 437-50 |
|
GSE38497 |
| Charlap, Jeffrey H et al. (2003) Exposure-disease continuum for 2-chloro-2'-deoxyadenosine, a prototype ocular teratogen. 3. Intervention with PK11195.; Birth Defects Res A Clin Mol Teratol, 67: 108-15 |
|
GSE1070 GSE1068 |
| Charles, Edgar D et al. (2011) Clonal B cells in patients with hepatitis C virus-associated mixed cryoglobulinemia contain an expanded anergic CD21low B-cell subset.; Blood, 117: 5425-37 |
|
GSE18084 |
| Charoy, Camille et al. (2017) Genetic specification of left-right asymmetry in the diaphragm muscles and their motor innervation.; Elife, 6: [no pages] |
|
GSE84778 |
| Chartoumpekis, Dionysios V et al. (2013) Hepatic gene expression profiling in Nrf2 knockout mice after long-term high-fat diet-induced obesity.; Oxid Med Cell Longev, 2013: 340731 |
|
GSE33575 |
| Chase, Rebecca et al. (2022) Global analyses of mRNA expression in human sensory neurons reveal eIF5A as a conserved target for inflammatory pain.; FASEB J, 36: e22422 |
|
GSE192566.1 |
| Chasman, Deborah et al. (2019) Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development.; Cell Syst, 9: 167-186.e12 |
|
GSE127064 |
| Chassaing, Nicolas et al. (2016) Targeted resequencing identifies PTCH1 as a major contributor to ocular developmental anomalies and extends the SOX2 regulatory network.; Genome Res, 26: 474-85 |
|
GSE74598 |
| Chasseigneaux, Stéphanie et al. (2018) Isolation and differential transcriptome of vascular smooth muscle cells and mid-capillary pericytes from the rat brain.; Sci Rep, 8: 12272 |
|
GSE100355 |
| Chasseigneaux, Stéphanie et al. (2024) Fasting upregulates the monocarboxylate transporter MCT1 at the rat blood-brain barrier through PPAR δ activation.; Fluids Barriers CNS, 21: 33 |
|
GSE241803 |
| Chater-Diehl, Eric J et al. (2016) Alteration of Gene Expression, DNA Methylation, and Histone Methylation in Free Radical Scavenging Networks in Adult Mouse Hippocampus following Fetal Alcohol Exposure.; PLoS One, 11: e0154836 |
|
GSE66644 |
| Chatonnet, Fabrice et al. (2012) Genome-wide search reveals the existence of a limited number of thyroid hormone receptor alpha target genes in cerebellar neurons.; PLoS One, 7: e30703 |
|
GSE24793 |
| Chatterjee, Jit et al. (2021) Asthma reduces glioma formation by T cell decorin-mediated inhibition of microglia.; Nat Commun, 12: 7122 |
|
GSE166551 |
| Chatterjee, Jit et al. (2024) Brain injury drives optic glioma formation through neuron-glia signaling.; Acta Neuropathol Commun, 12: 21 |
|
GSE233373 |
| Chatterjee, Namita et al. (2013) Histone deacetylase inhibitors modulate miRNA and mRNA expression, block metaphase, and induce apoptosis in inflammatory breast cancer cells.; Cancer Biol Ther, 14: 658-71 |
|
GSE28542 |
| Chatterjee, Shankha S et al. (2024) Increased translation driven by non-canonical EZH2 creates a synthetic vulnerability in enzalutamide-resistant prostate cancer.; Nat Commun, 15: 9755 |
|
GSE266954 GSE266951 |
| Chatterjee, Snehajyoti et al. (2020) The CBP KIX domain regulates long-term memory and circadian activity.; BMC Biol, 18: 155 |
|
GSE151681 |
| Chatterjee, Snehajyoti et al. (2022) Endoplasmic reticulum chaperone genes encode effectors of long-term memory.; Sci Adv, 8: eabm6063 |
|
GSE167566 |
| Chatterjee, Snehajyoti et al. (2023) Activity-induced gene expression in the human brain.; bioRxiv, [no vol.]: [no pages] |
|
GSE224952.2 |
| Chatterjee, Snehajyoti et al. [Unknown date]Reinstating plasticity and memory in a tauopathy mouse model with an acetyltransferase activator.; EMBO Mol Med, 10: [no pages] |
|
GSE103360 |
| Chatterjee, Sumantra et al. (2014) In vivo genome-wide analysis of multiple tissues identifies gene regulatory networks, novel functions and downstream regulatory genes for Bapx1 and its co-regulation with Sox9 in the mammalian vertebral column.; BMC Genomics, 15: 1072 |
|
GSE35898 |
| Chaturvedi, Garima et al. (2024) Dose-Dependent Transcriptional Response to Ionizing Radiation Is Orchestrated with DNA Repair within the Nuclear Space.; Int J Mol Sci, 25: [no pages] |
|
GSE244666 |
| Chatzi, Christina et al. (2016) Transcriptional Profiling of Newly Generated Dentate Granule Cells Using TU Tagging Reveals Pattern Shifts in Gene Expression during Circuit Integration.; eNeuro, 3: [no pages] |
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GSE76587 |
| Chau, Kevin F et al. [Unknown date]Downregulation of ribosome biogenesis during early forebrain development.; Elife, 7: [no pages] |
|
GSE100421 |
| Chau, Michael et al. (2011) Organization of the Indian hedgehog--parathyroid hormone-related protein system in the postnatal growth plate.; J Mol Endocrinol, 47: 99-107 |
|
GSE23432 |
| Chaudhuri, Amrita Datta et al. (2013) MicroRNA-142 reduces monoamine oxidase A expression and activity in neuronal cells by downregulating SIRT1.; PLoS One, 8: e79579 |
|
GSE50133.2 |
| Chauhan, Dharminder et al. (2012) A small molecule inhibitor of ubiquitin-specific protease-7 induces apoptosis in multiple myeloma cells and overcomes bortezomib resistance.; Cancer Cell, 22: 345-58 |
|
GSE39754 |
| Chauhan, Vinita et al. (2014) Identification of gene-based responses in human blood cells exposed to alpha particle radiation.; BMC Med Genomics, 7: 43 |
|
GSE80547 |
| Chaussabel, Damien et al. (2003) Unique gene expression profiles of human macrophages and dendritic cells to phylogenetically distinct parasites.; Blood, 102: 672-81 |
|
GSE360 |
| Chaussé, Anne-Marie et al. (2023) Epithelial cell invasion bysalmonellatyphimurium induces modulation of genes controlled by aryl hydrocarbon receptor signaling and involved in extracellular matrix biogenesis.; Virulence, 14: 2158663 |
|
GSE151881 |
| Chauvin, Céline et al. (2017) High-Throughput Drug Screening Identifies Pazopanib and Clofilium Tosylate as Promising Treatments for Malignant Rhabdoid Tumors.; Cell Rep, 21: 1737-1745 |
|
GSE102467 |
| Chauvistré, Heike et al. (2022) Persister state-directed transitioning and vulnerability in melanoma.; Nat Commun, 13: 3055 |
|
GSE138068 |
| Chavarria-Smith, Joseph et al. (2022) Dual antibody inhibition of KLK5 and KLK7 for Netherton syndrome and atopic dermatitis.; Sci Transl Med, 14: eabp9159 |
|
GSE205530 GSE205531 |
| Chavdoula, Evangelia et al. (2023) Transcriptional regulation of amino acid metabolism by KDM2B, in the context of ncPRC1.1 and in concert with MYC and ATF4.; bioRxiv, [no vol.]: [no pages] |
|
GSE245824 |
| Chawla, Lakhmir S et al. (2016) Acute appendicitis: transcript profiling of blood identifies promising biomarkers and potential underlying processes.; BMC Med Genomics, 9: 40 |
|
GSE83091 |
| Chaya, Taro et al. (2021) Deficiency of the neurodevelopmental disorder-associated gene Cyfip2 alters the retinal ganglion cell properties and visual acuity.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE176528 |
| Chaya, Taro et al. (2022) Multiple knockout mouse and embryonic stem cell models reveal the role of miR-124a in neuronal maturation.; J Biol Chem, 298: 102293 |
|
GSE196356 |
| Cheadle, Chris et al. (2010) Transcription of proteinase 3 and related myelopoiesis genes in peripheral blood mononuclear cells of patients with active Wegener's granulomatosis.; Arthritis Rheum, 62: 1744-54 |
|
GSE18885 |
| Cheadle, Chris et al. (2012) Erythroid-specific transcriptional changes in PBMCs from pulmonary hypertension patients.; PLoS One, 7: e34951 |
|
GSE33463 |
| Cheadle, Lucas et al. (2018) Visual Experience-Dependent Expression of Fn14 Is Required for Retinogeniculate Refinement.; Neuron, 99: 525-539.e10 |
|
GSE117023 GSE117022 |
| Cheah, Menghon et al. (2023) Integrin-Driven Axon Regeneration in the Spinal Cord Activates a Distinctive CNS Regeneration Program.; J Neurosci, 43: 4775-4794 |
|
GSE188776 GSE188775 |
| Checa, Marco et al. (2016) Cigarette Smoke Enhances the Expression of Profibrotic Molecules in Alveolar Epithelial Cells.; PLoS One, 11: e0150383 |
|
GSE77942 |
| Chechlinska, Magdalena et al. (2009) Molecular signature of cell cycle exit induced in human T lymphoblasts by IL-2 withdrawal.; BMC Genomics, 10: 261 |
|
GSE13909 |
| Cheffer, Arquimedes et al. (2023) DOT1L deletion impairs the development of cortical parvalbumin-expressing interneurons.; Cereb Cortex, 33: 10272-10285 |
|
GSE221994 |
| Chelmicki, Tomasz et al. (2014) MOF-associated complexes ensure stem cell identity and Xist repression.; Elife, 3: e02024 |
|
GSE57698 |
| Cheloufi, Sihem et al. (2015) The histone chaperone CAF-1 safeguards somatic cell identity.; Nature, 528: 218-24 |
|
GSE72744 |
| Chembazhi, Ullas Valiya et al. (2023) PTBP1 controls intestinal epithelial regeneration through post-transcriptional regulation of gene expression.; Nucleic Acids Res, [no vol.]: [no pages] |
|
GSE185499 |
| Chemello, Francesco et al. (2015) Gene expression changes of single skeletal muscle fibers in response to modulation of the mitochondrial calcium uniporter (MCU).; Genom Data, 5: 64-7 |
|
GSE60931 |
| Chemello, Francesco et al. (2023) Dysfunctional mitochondria accumulate in a skeletal muscle knockout model of Smn1, the causal gene of spinal muscular atrophy.; Cell Death Dis, 14: 162 |
|
GSE207890 |
| Chen, An-Jou et al. (2012) STAR RNA-binding protein Quaking suppresses cancer via stabilization of specific miRNA.; Genes Dev, 26: 1459-72 |
|
GSE19687 |
| Chen, Bo et al. (2024) Plexin D1 emerges as a novel target in the development of neural lineage plasticity in treatment-resistant prostate cancer.; Oncogene, 43: 2325-2337 |
|
GSE267961 |
| Chen, C et al. (2012) Two gene co-expression modules differentiate psychotics and controls.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE35977 GSE35974 |
| Chen, Can et al. (2013) Inhibition of neuronal nitric oxide synthase activity promotes migration of human-induced pluripotent stem cell-derived neural stem cells toward cancer cells.; J Neurochem, 126: 318-30 |
|
GSE40750 GSE40749 |
| Chen, Carissa et al. (2024) Trans-omic profiling uncovers molecular controls of early human cerebral organoid formation.; Cell Rep, 43: 114219 |
|
GSE248901 |
| Chen, Changmin et al. (2013) Differential disruption of EWS-FLI1 binding by DNA-binding agents.; PLoS One, 8: e69714 |
|
GSE45414 |
| Chen, Charlie D et al. (2004) Molecular determinants of resistance to antiandrogen therapy.; Nat Med, 10: 33-9 |
|
GSE846 |
| Chen, Chien-Wen et al. (2025) Plasticity of the mammalian integrated stress response.; Nature, 641: 1319-1328 |
|
GSE268127 GSE268132 GSE268130 |
| Chen, Chih-Ying et al. (2022) Galnt17 loss-of-function leads to developmental delay and abnormal coordination, activity, and social interactions with cerebellar vermis pathology.; Dev Biol, 490: 155-171 |
|
GSE180040 |
| Chen, Chin et al. (2012) Expression profiling identifies novel gene targets and functions for Pdx1 in the duodenum of mature mice.; Am J Physiol Gastrointest Liver Physiol, 302: G407-19 |
|
GSE29048 |