List of all 20,073 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Casorelli, I et al. (2006) Identification of a molecular signature for leukemic promyelocytes and their normal counterparts: Focus on DNA repair genes.; Leukemia, 20: 1978-88 |
|
GSE64282 |
| Cassani, Barbara et al. (2009) Integration of retroviral vectors induces minor changes in the transcriptional activity of T cells from ADA-SCID patients treated with gene therapy.; Blood, 114: 3546-56 |
|
GSE17354 |
| Cassarino, Maria Francesca et al. (2018) Gene expression profiling in human corticotroph tumours reveals distinct, neuroendocrine profiles.; J Neuroendocrinol, 30: e12628 |
|
GSE93825 |
| Casselli, Timothy et al. (2017) MicroRNA and mRNA Transcriptome Profiling in Primary Human Astrocytes Infected with Borrelia burgdorferi.; PLoS One, 12: e0170961 |
|
GSE85143 |
| Casselli, Timothy et al. (2021) A murine model of Lyme disease demonstrates that Borrelia burgdorferi colonizes the dura mater and induces inflammation in the central nervous system.; PLoS Pathog, 17: e1009256 |
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GSE149287 |
| Casser, E et al. (2019) Differences in blastomere totipotency in 2-cell mouse embryos are a maternal trait mediated by asymmetric mRNA distribution.; Mol Hum Reprod, 25: 729-744 |
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GSE120905 |
| Castanho, Isabel et al. (2020) Transcriptional Signatures of Tau and Amyloid Neuropathology.; Cell Rep, 30: 2040-2054.e5 |
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GSE125957 |
| Castanza, Anthony S et al. (2021) AUTS2 Regulates RNA Metabolism and Dentate Gyrus Development in Mice.; Cereb Cortex, 31: 4808-4824 |
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GSE112792 |
| Castañer, Olga et al. (2013) In vivo transcriptomic profile after a Mediterranean diet in high-cardiovascular risk patients: a randomized controlled trial.; Am J Clin Nutr, 98: 845-53 |
|
GSE28358 |
| Casteels, Tamara et al. (2021) An inhibitor-mediated beta-cell dedifferentiation model reveals distinct roles for FoxO1 in glucagon repression and insulin maturation.; Mol Metab, 54: 101329 |
|
GSE184210 |
| Castellan, Martina et al. (2021) Single-cell analyses reveal YAP/TAZ as regulators of stemness and cell plasticity in Glioblastoma.; Nat Cancer, 2: 174-188 |
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GSE133463 |
| Castellano, Esther et al. (2009) Serum-dependent transcriptional networks identify distinct functional roles for H-Ras and N-Ras during initial stages of the cell cycle.; Genome Biol, 10: R123 |
|
GSE14829 |
| Castellano, Joseph M et al. (2017) Human umbilical cord plasma proteins revitalize hippocampal function in aged mice.; Nature, 544: 488-492 |
|
GSE75416 |
| Castellanos-Martín, Andrés et al. (2015) Unraveling heterogeneous susceptibility and the evolution of breast cancer using a systems biology approach.; Genome Biol, 16: 40 |
|
GSE54582 |
| Castelli, Lydia M et al. (2021) SRSF1-dependent inhibition of C9ORF72-repeat RNA nuclear export: genome-wide mechanisms for neuroprotection in amyotrophic lateral sclerosis.; Mol Neurodegener, 16: 53 |
|
GSE139900 |
| Castellino, Robert C et al. (2010) Heterozygosity for Pten promotes tumorigenesis in a mouse model of medulloblastoma.; PLoS One, 5: e10849 |
|
GSE19059 |
| Castellsagué, Joan et al. (2015) Comprehensive establishment and characterization of orthoxenograft mouse models of malignant peripheral nerve sheath tumors for personalized medicine.; EMBO Mol Med, 7: 608-27 |
|
GSE60082 |
| Castelo-Szekely, Violeta et al. (2019) Charting DENR-dependent translation reinitiation uncovers predictive uORF features and links to circadian timekeeping via Clock.; Nucleic Acids Res, 47: 5193-5209 |
|
GSE124793 |
| Castillo Cabrera, Johnny et al. (2023) AGC kinase inhibitors regulate STING signaling through SGK-dependent and SGK-independent mechanisms.; Cell Chem Biol, 30: 1601-1616.e6 |
|
GSE243816 |
| Castillo, Erika et al. (2017) Comparative profiling of cortical gene expression in Alzheimer's disease patients and mouse models demonstrates a link between amyloidosis and neuroinflammation.; Sci Rep, 7: 17762 |
|
GSE92926 |
| Castillo-González, Julia et al. (2023) Cortistatin deficiency reveals a dysfunctional brain endothelium with impaired gene pathways, exacerbated immune activation, and disrupted barrier integrity.; J Neuroinflammation, 20: 226 |
|
GSE207405 |
| Castranio, Emilie L et al. (2017) Gene co-expression networks identify Trem2 and Tyrobp as major hubs in human APOE expressing mice following traumatic brain injury.; Neurobiol Dis, 105: 1-14 |
|
GSE102014 |
| Castranio, Emilie L et al. (2018) ABCA1 haplodeficiency affects the brain transcriptome following traumatic brain injury in mice expressing human APOE isoforms.; Acta Neuropathol Commun, 6: 69 |
|
GSE117223 |
| Castro, Nadia P et al. (2016) Adaptation of Laser Microdissection Technique for the Study of a Spontaneous Metastatic Mammary Carcinoma Mouse Model by NanoString Technologies.; PLoS One, 11: e0153270 |
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GSE63627 |
| Castro, Ryan et al. (2020) Specific labeling of synaptic schwann cells reveals unique cellular and molecular features.; Elife, 9: [no pages] |
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GSE152774 |
| Castro, Ryan W et al. (2023) Aging alters mechanisms underlying voluntary movements in spinal motor neurons of mice, primates, and humans.; JCI Insight, 8: [no pages] |
|
GSE226699 |
| Castro-Piedras, Isabel et al. (2020) Identification of Novel MeCP2 Cancer-Associated Target Genes and Post-Translational Modifications.; Front Oncol, 10: 576362 |
|
GSE160150.2 |
| Casulleras, Mireia et al. (2020) Albumin internalizes and inhibits endosomal TLR signaling in leukocytes from patients with decompensated cirrhosis.; Sci Transl Med, 12: [no pages] |
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GSE146462 |
| Catale, Clarissa et al. (2022) Early Life Social Stress Causes Sex- and Region-Dependent Dopaminergic Changes that Are Prevented by Minocycline.; Mol Neurobiol, 59: 3913-3932 |
|
GSE199136 |
| Catanese, Alberto et al. (2021) Synaptic disruption and CREB-regulated transcription are restored by K+channel blockers in ALS.; EMBO Mol Med, 13: e13131 |
|
GSE168831 |
| Catani, L et al. (2009) Molecular profile of CD34+ stem/progenitor cells according to JAK2V617F mutation status in essential thrombocythemia.; Leukemia, 23: 997-1000 |
|
GSE9827 |
| Catela, Catarina et al. (2022) Control of spinal motor neuron terminal differentiation through sustainedHoxc8gene activity.; Elife, 11: [no pages] |
|
GSE174709 |
| Cates, Hannah M et al. (2018) Genome-wide transcriptional profiling of central amygdala and orbitofrontal cortex during incubation of methamphetamine craving.; Neuropsychopharmacology, 43: 2426-2434 |
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GSE111243 |
| Cates, Kitra et al. (2021) Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs.; Cell Stem Cell, 28: 127-140.e9 |
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GSE154360 GSE154363 GSE154365 |
| Cates, Kitra et al. (2025) Fate erasure logic of gene networks underlying direct neuronal conversion of somatic cells by microRNAs.; Cell Rep, 44: 115153 |
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GSE283006 |
| Cathomas, Flurin et al. (2022) Whole blood transcriptional signatures associated with rapid antidepressant response to ketamine in patients with treatment resistant depression.; Transl Psychiatry, 12: 12 |
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GSE185855 |
| Catoire, Milène et al. (2014) Fatty acid-inducible ANGPTL4 governs lipid metabolic response to exercise.; Proc Natl Acad Sci U S A, 111: E1043-52 |
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GSE41769 |
| Catta-Preta, Rinaldo et al. (2021) Transcriptional Pathology Evolves over Time in Rat Hippocampus after Lateral Fluid Percussion Traumatic Brain Injury.; Neurotrauma Rep, 2: 512-525 |
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GSE173975 |
| Cattane, Nadia et al. (2015) Altered gene expression in schizophrenia: findings from transcriptional signatures in fibroblasts and blood.; PLoS One, 10: e0116686 |
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GSE62333 |
| Cattaneo, Elisa et al. (2011) Preinvasive colorectal lesion transcriptomes correlate with endoscopic morphology (polypoid vs. nonpolypoid).; EMBO Mol Med, 3: 334-47 |
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GSE21962 |
| Caubit, Xavier et al. (2016) TSHZ3 deletion causes an autism syndrome and defects in cortical projection neurons.; Nat Genet, 48: 1359-1369 |
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GSE85512 |
| Caubit, Xavier et al. (2021) Camk2a-CreandTshz3Expression in Mouse Striatal Cholinergic Interneurons: Implications for Autism Spectrum Disorder.; Front Genet, 12: 683959 |
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GSE157658 |
| Cavalier, Alyssa N et al. (2021) Accelerated aging of the brain transcriptome by the common chemotherapeutic doxorubicin.; Exp Gerontol, 152: 111451 |
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GSE178812 |
| Cavanaugh, Catherine Anne et al. (2025) Transcriptomic Response to Neuromuscular Electrical Stimulation in Muscle, Brain, and Plasma EVs in WT and Klotho-Deficient Mice.; Int J Mol Sci, 26: [no pages] |
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GSE296705 |
| Cavnar, Michael J et al. (2013) KIT oncogene inhibition drives intratumoral macrophage M2 polarization.; J Exp Med, 210: 2873-86 |
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GSE51697 |
| Ceasrine, Alexis M et al. (2022) Maternal diet disrupts the placenta-brain axis in a sex-specific manner.; Nat Metab, 4: 1732-1745 |
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GSE188872 |
| Ceballos-Chávez, María et al. (2015) The chromatin Remodeler CHD8 is required for activation of progesterone receptor-dependent enhancers.; PLoS Genet, 11: e1005174 |
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GSE62257 |
| Ceccarelli, Manuela et al. (2021) Tumor Growth in the High Frequency Medulloblastoma Mouse Model Ptch1+/-/Tis21KOHas a Specific Activation Signature of the PI3K/AKT/mTOR Pathway and Is Counteracted by the PI3K Inhibitor MEN1611.; Front Oncol, 11: 692053 |
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GSE178122 GSE178124 |
| Cecchelli, Romeo et al. (2014) A stable and reproducible human blood-brain barrier model derived from hematopoietic stem cells.; PLoS One, 9: e99733 |
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GSE45171 |
| Cederquist, Gustav Y et al. (2020) A Multiplex Human Pluripotent Stem Cell Platform Defines Molecular and Functional Subclasses of Autism-Related Genes.; Cell Stem Cell, 27: 35-49.e6 |
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GSE146760 |
| Cederroth, Christopher R et al. (2019) Circadian Regulation of Cochlear Sensitivity to Noise by Circulating Glucocorticoids.; Curr Biol, 29: 2477-2487.e6 |
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GSE107086 GSE88954 |
| Cejas, Paloma et al. (2021) Subtype heterogeneity and epigenetic convergence in neuroendocrine prostate cancer.; Nat Commun, 12: 5775 |
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GSE156289 |
| Celen, Cemre et al. (2017) Arid1bhaploinsufficient mice reveal neuropsychiatric phenotypes and reversible causes of growth impairment.; Elife, 6: [no pages] |
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GSE92238 |
| Celik, Hamza et al. (2018) JARID2 Functions as a Tumor Suppressor in Myeloid Neoplasms by Repressing Self-Renewal in Hematopoietic Progenitor Cells.; Cancer Cell, 34: 741-756.e8 |
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GSE120595 |
| Celikkaya, Hilal et al. (2019) GATA3 Promotes the Neural Progenitor State but Not Neurogenesis in 3D Traumatic Injury Model of Primary Human Cortical Astrocytes.; Front Cell Neurosci, 13: 23 |
|
GSE117907 |
| Cembrowski, Mark S et al. (2016) Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons.; Elife, 5: e14997 |
|
GSE74985 |
| Cembrowski, Mark S et al. (2016) Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons.; Neuron, 89: 351-68 |
|
GSE67403 |
| Cembrowski, Mark S et al. (2018) Dissociable Structural and Functional Hippocampal Outputs via Distinct Subiculum Cell Classes.; Cell, 173: 1280-1292.e18 |
|
GSE100449.1 |
| Centonze, Alessia et al. (2025) A plastic EMP1⁺ to LGR5⁺ cell state conversion as a bypass to KRAS-G12D pharmacological inhibition in metastatic colorectal cancer.; Cancer Discov, [no vol.]: [no pages] |
|
GSE294823 |
| Ceolin, Laura et al. (2017) Cell Type-Specific mRNA Dysregulation in Hippocampal CA1 Pyramidal Neurons of the Fragile X Syndrome Mouse Model.; Front Mol Neurosci, 10: 340 |
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GSE94559 |
| Ceppi, Maurizio et al. (2009) Ribosomal protein mRNAs are translationally-regulated during human dendritic cells activation by LPS.; Immunome Res, 5: 5 |
|
GSE14000 |
| Cera, Isabella et al. (2019) Genes encoding SATB2-interacting proteins in adult cerebral cortex contribute to human cognitive ability.; PLoS Genet, 15: e1007890 |
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GSE123992 |
| Cerase, Andrea et al. (2021) Chd8 regulates X chromosome inactivation in mouse through fine-tuning control of Xist expression.; Commun Biol, 4: 485 |
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GSE166858 |
| Cerda-Jara, Cledi A et al. (2024) miR-7 controls glutamatergic transmission and neuronal connectivity in a Cdr1as-dependent manner.; EMBO Rep, 25: 3008-3039 |
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GSE224184 |
| Ceribelli, Michele et al. (2016) A Druggable TCF4- and BRD4-Dependent Transcriptional Network Sustains Malignancy in Blastic Plasmacytoid Dendritic Cell Neoplasm.; Cancer Cell, 30: 764-778 |
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GSE75650.1 GSE75650.2 |
| Cermenati, Gaia et al. (2015) Lack of sterol regulatory element binding factor-1c imposes glial Fatty Acid utilization leading to peripheral neuropathy.; Cell Metab, 21: 571-83 |
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GSE65754 |
| Cernetich, Amy et al. (2006) Involvement of gonadal steroids and gamma interferon in sex differences in response to blood-stage malaria infection.; Infect Immun, 74: 3190-203 |
|
GSE4324 |
| Cerniauskas, Ignas et al. (2019) Chronic Stress Induces Activity, Synaptic, and Transcriptional Remodeling of the Lateral Habenula Associated with Deficits in Motivated Behaviors.; Neuron, 104: 899-915.e8 |
|
GSE136723 |
| Cerri, Chiara et al. (2016) The Chemokine CCL2 Mediates the Seizure-enhancing Effects of Systemic Inflammation.; J Neurosci, 36: 3777-88 |
|
GSE81024 |
| Cerutti, Camilla et al. (2016) MicroRNA-155 contributes to shear-resistant leukocyte adhesion to human brain endothelium in vitro.; Fluids Barriers CNS, 13: 8 |
|
GSE44693 |
| Cervantes, Sara et al. (2017) Late-stage differentiation of embryonic pancreatic β-cells requires Jarid2.; Sci Rep, 7: 11643 |
|
GSE77238 |
| Cesani, Martina et al. (2013) Metallothioneins as dynamic markers for brain disease in lysosomal disorders.; Ann Neurol, [no vol.]: [no pages] |
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GSE23350 |
| Cescon, Matilde et al. (2023) Collagen VI sustains cell stemness and chemotherapy resistance in glioblastoma.; Cell Mol Life Sci, 80: 233 |
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GSE226700 |
| Cescon, Matilde et al. (2024) Gut microbiota depletion delays somatic peripheral nerve development and impairs neuromuscular junction maturation.; Gut Microbes, 16: 2363015 |
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GSE210649.1 |
| Ceyzériat, Kelly et al. (2018) Modulation of astrocyte reactivity improves functional deficits in mouse models of Alzheimer's disease.; Acta Neuropathol Commun, 6: 104 |
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GSE108520 |
| Cha, Hye Ji et al. (2022) Regulation of gene expression by the APP family in the adult cerebral cortex.; Sci Rep, 12: 66 |
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GSE181936 |
| Cha, Jeeyeon et al. (2023) Species-specific roles for the MAFA and MAFB transcription factors in regulating islet β cell identity.; JCI Insight, 8: [no pages] |
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GSE228992.1 GSE224797 GSE230728 |
| Cha, Junha et al. (2024) Single-cell analysis reveals cellular and molecular factors counteracting HPV-positive oropharyngeal cancer immunotherapy outcomes.; J Immunother Cancer, 12: [no pages] |
|
GSE226620.1 |
| Chaand, Mudit et al. (2023) Erythroid lineage chromatin accessibility maps facilitate identification and validation of NFIX as a fetal hemoglobin repressor.; Commun Biol, 6: 640 |
|
GSE234155 |
| Chabbert, Dorian et al. (2019) Postnatal Tshz3 Deletion Drives Altered Corticostriatal Function and Autism Spectrum Disorder-like Behavior.; Biol Psychiatry, 86: 274-285 |
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GSE119791 |
| Chaboub, Lesley S et al. (2016) Temporal Profiling of Astrocyte Precursors Reveals Parallel Roles for Asef during Development and after Injury.; J Neurosci, 36: 11904-11917 |
|
GSE80826 |
| Chabowska-Kita, Agnieszka et al. (2015) Low ambient temperature during early postnatal development fails to cause a permanent induction of brown adipocytes.; FASEB J, 29: 3238-52 |
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GSE62350 |
| Chacón, Pedro J et al. (2015) Cerebellin 4, a synaptic protein, enhances inhibitory activity and resistance of neurons to amyloid-? toxicity.; Neurobiol Aging, 36: 1057-71 |
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GSE54622 |
| Chadarevian, Jean Paul et al. (2023) Engineering an inhibitor-resistant human CSF1R variant for microglia replacement.; J Exp Med, 220: [no pages] |
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GSE220213 GSE220214 |
| Chadwick, Jessica A et al. (2017) Renin-angiotensin-aldosterone system inhibitors improve membrane stability and change gene-expression profiles in dystrophic skeletal muscles.; Am J Physiol Cell Physiol, 312: C155-C168 |
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GSE84876 |
| Chadwick, Jessica S et al. (2025) Dietary-dependent sensitization of neuronal leptin signaling promotes neural repair after injury via cAMP and gene transcription.; Neuron, 113: 2839-2855.e8 |
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GSE224284 GSE224220 |
| Chadwick, Wayne et al. (2010) Minimal peroxide exposure of neuronal cells induces multifaceted adaptive responses.; PLoS One, 5: e14352 |
|
GSE22525 |
| Chadwick, Wayne et al. (2011) Amitriptyline-mediated cognitive enhancement in aged 3×Tg Alzheimer's disease mice is associated with neurogenesis and neurotrophic activity.; PLoS One, 6: e21660 |
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GSE26836 |
| Chadwick, Wayne et al. (2011) Multiple oxygen tension environments reveal diverse patterns of transcriptional regulation in primary astrocytes.; PLoS One, 6: e21638 |
|
GSE29296 |
| Chae, Sujin et al. (2021) Molecular laterality encodes stress susceptibility in the medial prefrontal cortex.; Mol Brain, 14: 92 |
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GSE114224 |
| Chahal, Manik et al. (2010) MGMT modulates glioblastoma angiogenesis and response to the tyrosine kinase inhibitor sunitinib.; Neuro Oncol, 12: 822-33 |
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GSE40776 |