List of all 22,542 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Caiazzo, Massimiliano et al. (2011) Direct generation of functional dopaminergic neurons from mouse and human fibroblasts.; Nature, [no vol.]: [no pages] |
|
GSE27174 |
| Caiazzo, Massimiliano et al. (2015) Direct conversion of fibroblasts into functional astrocytes by defined transcription factors.; Stem Cell Reports, 4: 25-36 |
|
GSE59018 |
| Caimari, Antoni et al. (2010) Peripheral blood mononuclear cells as a model to study the response of energy homeostasis-related genes to acute changes in feeding conditions.; OMICS, 14: 129-41 |
|
GSE14497 |
| Cain, Jacob T et al. (2014) Shifts in the vascular endothelial growth factor isoforms result in transcriptome changes correlated with early neural stem cell proliferation and differentiation in mouse forebrain.; Dev Neurobiol, 74: 63-81 |
|
GSE52542 |
| Caires-Júnior, Luiz Carlos et al. (2018) Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells.; Nat Commun, 9: 475 |
|
GSE102128 |
| Cajigas, Ivelisse et al. (2018) The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain.; Mol Cell, 71: 956-972.e9 |
|
GSE102089 |
| Calabretta, Sara et al. (2018) Loss of PRMT5 Promotes PDGFRα Degradation during Oligodendrocyte Differentiation and Myelination.; Dev Cell, 46: 426-440.e5 |
|
GSE116242 |
| Calafate, Sara et al. (2023) Early alterations in the MCH system link aberrant neuronal activity and sleep disturbances in a mouse model of Alzheimer's disease.; Nat Neurosci, 26: 1021-1031 |
|
GSE225181 |
| Calarco, John A et al. (2009) Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein.; Cell, 138: 898-910 |
|
GSE16187 |
| Calder, Jack et al. (2021) Resistance to BET inhibitors in lung adenocarcinoma is mediated by casein kinase phosphorylation of BRD4.; Oncogenesis, 10: 27 |
|
GSE164813 |
| Calderon, Boris et al. (2011) Entry of diabetogenic T cells into islets induces changes that lead to amplification of the cellular response.; Proc Natl Acad Sci U S A, 108: 1567-72 |
|
GSE26147 |
| Calderon, Lesly et al. (2022) Cohesin-dependence of neuronal gene expression relates to chromatin loop length.; Elife, 11: [no pages] |
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GSE172425 GSE172427 |
| Calderon-Gonzalez, Ricardo et al. (2017) GNP-GAPDH1-22nanovaccines prevent neonatal listeriosis by blocking microglial apoptosis and bacterial dissemination.; Oncotarget, 8: 53916-53934 |
|
GSE32505 |
| Calderón, Lesly et al. (2012) Synergistic, context-dependent, and hierarchical functions of epithelial components in thymic microenvironments.; Cell, 149: 159-72 |
|
GSE33268 |
| Caldwell, Alison L M et al. (2022) Aberrant astrocyte protein secretion contributes to altered neuronal development in multiple models of neurodevelopmental disorders.; Nat Neurosci, 25: 1163-1178 |
|
GSE139285 |
| Caldwell, Andrew B et al. (2020) Dedifferentiation and neuronal repression define familial Alzheimer's disease.; Sci Adv, 6: [no pages] |
|
GSE123891 |
| Caldwell, Andrew B et al. (2022) Endotype reversal as a novel strategy for screening drugs targeting familial Alzheimer's disease.; Alzheimers Dement, [no vol.]: [no pages] |
|
GSE95673 |
| Caldwell, Andrew B et al. (2022) Transcriptomic profiling of sporadic Alzheimer's disease patients.; Mol Brain, 15: 83 |
|
GSE203206 |
| Calero-Nieto, Fernando J et al. (2014) Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.; EMBO J, 33: 1212-26 |
|
GSE47988 |
| Cali, Christopher P et al. (2019) C9orf72 intermediate repeats are associated with corticobasal degeneration, increased C9orf72 expression and disruption of autophagy.; Acta Neuropathol, 138: 795-811 |
|
GSE133323 |
| Caliskan, Minal et al. (2011) The effects of EBV transformation on gene expression levels and methylation profiles.; Hum Mol Genet, 20: 1643-52 |
|
GSE26210 |
| Callari, Maurizio et al. (2014) Subtype-dependent prognostic relevance of an interferon-induced pathway metagene in node-negative breast cancer.; Mol Oncol, 8: 1278-89 |
|
GSE37181 |
| Callejas, Blanca E et al. (2025) Calcitonin gene-related peptide promotes epithelial reparative and anticolitic functions of IL-4 educated human macrophages.; Am J Physiol Gastrointest Liver Physiol, 328: G1-G16 |
|
GSE242543 |
| Calligaris, Raffaella et al. (2009) A transcriptome analysis identifies molecular effectors of unconjugated bilirubin in human neuroblastoma SH-SY5Y cells.; BMC Genomics, 10: 543 |
|
GSE16768 |
| Calligaris, Raffaella et al. (2015) Blood transcriptomics of drug-naïve sporadic Parkinson's disease patients.; BMC Genomics, 16: 876 |
|
GSE72267 |
| Calvet, Loreley et al. (2022) YAP1 is essential for malignant mesothelioma tumor maintenance.; BMC Cancer, 22: 639 |
|
GSE196672 GSE196691 GSE196714 |
| Calvo, Ezequiel et al. (2012) Specific transcriptional response of four blockers of estrogen receptors on estradiol-modulated genes in the mouse mammary gland.; Breast Cancer Res Treat, 134: 625-47 |
|
GSE35206 |
| Calvo, Julia et al. (2013) Infrequent loss of luminal differentiation in ductal breast cancer metastasis.; PLoS One, 8: e78097 |
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GSE44408 |
| Calvo, Sarah et al. (2006) Systematic identification of human mitochondrial disease genes through integrative genomics.; Nat Genet, 38: 576-82 |
|
GSE4330 |
| Calvo-Garrido, Javier et al. (2019) SQSTM1/p62-Directed Metabolic Reprogramming Is Essential for Normal Neurodifferentiation.; Stem Cell Reports, 12: 696-711 |
|
GSE99559 |
| Calyjur, Priscila Clara et al. (2016) The mdx Mutation in the 129/Sv Background Results in a Milder Phenotype: Transcriptome Comparative Analysis Searching for the Protective Factors.; PLoS One, 11: e0150748 |
|
GSE77126 |
| Calzari, Luciano et al. (2020) Transcriptome Analysis of iPSC-Derived Neurons from Rubinstein-Taybi Patients Reveals Deficits in Neuronal Differentiation.; Mol Neurobiol, 57: 3685-3701 |
|
GSE135287 |
| Camarena, Vladimir et al. (2017) cAMP signaling regulates DNA hydroxymethylation by augmenting the intracellular labile ferrous iron pool.; Elife, 6: [no pages] |
|
GSE101153 |
| Camargo Moreno, Maria et al. (2017) Heterogeneity of p53 dependent genomic responses following ethanol exposure in a developmental mouse model of fetal alcohol spectrum disorder.; PLoS One, 12: e0180873 |
|
GSE100217 |
| Camateros, Pierre et al. (2009) Modulation of the allergic asthma transcriptome following resiquimod treatment.; Physiol Genomics, 38: 303-18 |
|
GSE13032 |
| Cameron, Alanna M et al. (2019) Inflammatory macrophage dependence on NAD+salvage is a consequence of reactive oxygen species-mediated DNA damage.; Nat Immunol, 20: 420-432 |
|
GSE123596 |
| Cameron, Darren et al. (2019) Transcriptional Changes following Cellular Knockdown of the Schizophrenia Risk GeneSETD1AAre Enriched for Common Variant Association with the Disorder.; Mol Neuropsychiatry, 5: 109-114 |
|
GSE118941 |
| Cameron, Donald P et al. (2023) Coinhibition of topoisomerase 1 and BRD4-mediated pause release selectively kills pancreatic cancer via readthrough transcription.; Sci Adv, 9: eadg5109 |
|
GSE211468 |
| Cameron, Evan G et al. (2024) A molecular switch for neuroprotective astrocyte reactivity.; Nature, 626: 574-582 |
|
GSE245816 |
| Camiña-Tato, Montse et al. (2010) Gender-associated differences of perforin polymorphisms in the susceptibility to multiple sclerosis.; J Immunol, 185: 5392-404 |
|
GSE23205 |
| Cammaerts, Sophia et al. (2015) Schizophrenia-Associated MIR204 Regulates Noncoding RNAs and Affects Neurotransmitter and Ion Channel Gene Sets.; PLoS One, 10: e0144428 |
|
GSE69675 |
| Campbell, Amy E et al. (2013) Analysis of disease-causing GATA1 mutations in murine gene complementation systems.; Blood, 121: 5218-27 |
|
GSE43356 |
| Campbell, Amy E et al. (2023) Compromised nonsense-mediated RNA decay results in truncated RNA-binding protein production upon DUX4 expression.; Cell Rep, 42: 112642 |
|
GSE178759 |
| Campbell, Aoife et al. (2022) AntimiR targeting of microRNA-134 reduces seizures in a mouse model of Angelman syndrome.; Mol Ther Nucleic Acids, 28: 514-529 |
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GSE199276 |
| Campbell, Benjamin F N et al. (2024) Gephyrin phosphorylation facilitates sexually dimorphic development and function of parvalbumin interneurons in the mouse hippocampus.; Mol Psychiatry, 29: 2510-2526 |
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GSE197607 |
| Campbell, Eric L et al. (2014) Transmigrating neutrophils shape the mucosal microenvironment through localized oxygen depletion to influence resolution of inflammation.; Immunity, 40: 66-77 |
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GSE39681 |
| Campbell, Gordon R O et al. (2011) Transcription factors expressed in olfactory bulb local progenitor cells revealed by genome-wide transcriptome profiling.; Mol Cell Neurosci, 46: 548-61 |
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GSE26406 |
| Campbell, Gregory P et al. (2024) Immunomodulation by the combination of statin and matrix-bound nanovesicle enhances optic nerve regeneration.; NPJ Regen Med, 9: 31 |
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GSE226780 |
| Campbell, John N et al. (2017) A molecular census of arcuate hypothalamus and median eminence cell types.; Nat Neurosci, 20: 484-496 |
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GSE90806 |
| Campbell, Kristin L et al. (2013) Gene expression changes in adipose tissue with diet- and/or exercise-induced weight loss.; Cancer Prev Res (Phila), 6: 217-31 |
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GSE43471 |
| Campbell, Thomas M et al. (2018) ERα Binding by Transcription Factors NFIB and YBX1 Enables FGFR2 Signaling to Modulate Estrogen Responsiveness in Breast Cancer.; Cancer Res, 78: 410-421 |
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GSE95299 |
| Campbell-Thompson, Martha et al. (2021) Islet sympathetic innervation and islet neuropathology in patients with type 1 diabetes.; Sci Rep, 11: 6562 |
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GSE181674 |
| Campeau, Philippe M et al. (2012) Clinical and molecular characterization of a severe form of partial lipodystrophy expanding the phenotype of PPAR? deficiency.; J Lipid Res, 53: 1968-78 |
|
GSE37990 |
| Campeau, Serge et al. (2023) Determination of steady-state transcriptome modifications associated with repeated homotypic stress in the rat rostral posterior hypothalamic region.; Front Neurosci, 17: 1173699 |
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GSE229159 |
| Campisi, Laura et al. (2022) Clonally expanded CD8 T cells characterize amyotrophic lateral sclerosis-4.; Nature, 606: 945-952 |
|
GSE199664 |
| Campla, Christie K et al. (2017) Pias3 is necessary for dorso-ventral patterning and visual response of retinal cones but is not required for rod photoreceptor differentiation.; Biol Open, 6: 881-890 |
|
GSE94011 |
| Campo Dell'Orto, Marta et al. (2007) New data on robustness of gene expression signatures in leukemia: comparison of three distinct total RNA preparation procedures.; BMC Genomics, 8: 188 |
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GSE7757 |
| Campolungo, Daniele et al. (2023) DUX4-r exerts a neomorphic activity that depends on GTF2I in acute lymphoblastic leukemia.; Sci Adv, 9: eadi3771 |
|
GSE227982 |
| Campos Coelho, Antonio Victor et al. (2020) Reanalysis of Gene Expression Profiles of CD4+ T Cells Treated with HIV-1 Latency Reversal Agents.; Microorganisms, 8: [no pages] |
|
GSE95297 |
| Camps, Jordi et al. (2009) Integrative genomics reveals mechanisms of copy number alterations responsible for transcriptional deregulation in colorectal cancer.; Genes Chromosomes Cancer, 48: 1002-17 |
|
GSE126053 |
| Camps, Jordi et al. (2013) Genetic amplification of the NOTCH modulator LNX2 upregulates the WNT/?-catenin pathway in colorectal cancer.; Cancer Res, 73: 2003-13 |
|
GSE33824 |
| Canale-Zambrano, Juan C et al. (2007) Intestinal phenotype of variable-weight cystic fibrosis knockout mice.; Am J Physiol Gastrointest Liver Physiol, 293: G222-9 |
|
GSE5715 |
| Canales, Cesar P et al. (2021) Sequential perturbations to mouse corticogenesis following in utero maternal immune activation.; Elife, 10: [no pages] |
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GSE166376 |
| Canales, Cesar P et al. (2025) Persistent cortical excitatory neuron dysregulation in adultChd8haploinsufficient mice.; bioRxiv, [no vol.]: [no pages] |
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GSE300997 |
| Canat, Antoine et al. (2023) DAXX safeguards heterochromatin formation in embryonic stem cells.; J Cell Sci, 136: [no pages] |
|
GSE241701 |
| Canchi, Saranya et al. (2020) Transcriptomic analysis of brain tissues identifies a role for CCAAT enhancer binding protein ? in HIV-associated neurocognitive disorder.; J Neuroinflammation, 17: 112 |
|
GSE152461 |
| Candor, Kathleen et al. (2025) The CLIC/GEEC pathway regulates particle uptake and formation of the virus-containing compartment (VCC) in HIV-1-infected macrophages.; PLoS Pathog, 21: e1012564 |
|
GSE248996 |
| Canella, Alessandro et al. (2023) Genetically modified IL2 bone-marrow-derived myeloid cells reprogram the glioma immunosuppressive tumor microenvironment.; Cell Rep, 42: 112891 |
|
GSE233646 |
| Canella, Alessandro et al. (2024) BRAF V600E in a preclinical model of pleomorphic Xanthoastrocytoma: Analysis of the tumor microenvironment and immune cell infiltration dynamicsin vivo.; Mol Ther Oncol, 32: 200808 |
|
GSE252367 |
| Cangemi, Claudia et al. (2011) Fibulin-1 is a marker for arterial extracellular matrix alterations in type 2 diabetes.; Clin Chem, 57: 1556-65 |
|
GSE13760 |
| Canna, Scott W et al. (2014) An activating NLRC4 inflammasome mutation causes autoinflammation with recurrent macrophage activation syndrome.; Nat Genet, 46: 1140-6 |
|
GSE57253 |
| Cannon, Matthew V et al. (2014) Maternal nutrition induces pervasive gene expression changes but no detectable DNA methylation differences in the liver of adult offspring.; PLoS One, 9: e90335 |
|
GSE40903 GSE40897 |
| Canny, Susan P et al. (2014) Latent gammaherpesvirus 68 infection induces distinct transcriptional changes in different organs.; J Virol, 88: 730-8 |
|
GSE51365 |
| Cano, Marisol et al. (2014) Oxidative stress induces mitochondrial dysfunction and a protective unfolded protein response in RPE cells.; Free Radic Biol Med, 69: 1-14 |
|
GSE49107 |
| Cano-Cano, Fátima et al. (2024) Retinal dysfunction in Huntington's disease mouse models concurs with local gliosis and microglia activation.; Sci Rep, 14: 4176 |
|
GSE216520 |
| Canonica, Jérémie et al. (2021) Pathogenic Effects of Mineralocorticoid Pathway Activation in Retinal Pigment Epithelium.; Int J Mol Sci, 22: [no pages] |
|
GSE172478 |
| Cantilena, Sandra et al. (2022) Direct targeted therapy for MLL-fusion-driven high-risk acute leukaemias.; Clin Transl Med, 12: e933 |
|
GSE203203 |
| Cantley, Jennifer et al. (2022) Selective PROTAC-mediated degradation of SMARCA2 is efficacious in SMARCA4 mutant cancers.; Nat Commun, 13: 6814 |
|
GSE205542 |
| Cantoni, Claudia et al. (2015) TREM2 regulates microglial cell activation in response to demyelination in vivo.; Acta Neuropathol, 129: 429-47 |
|
GSE70475 |
| Cantor, Erica L et al. (2022) Passage number affects differentiation of sensory neurons from human induced pluripotent stem cells.; Sci Rep, 12: 15869 |
|
GSE193571 |
| Cantu Gutierrez, Manuel E et al. (2025) Mapping the transcriptional and epigenetic landscape of organotypic endothelial diversity in the developing and adult mouse.; Nat Cardiovasc Res, 4: 473-495 |
|
GSE185345.2 |
| Canzio, Daniele et al. (2019) Antisense lncRNA Transcription Mediates DNA Demethylation to Drive Stochastic Protocadherin α Promoter Choice.; Cell, 177: 639-653.e15 |
|
GSE115862.1 GSE115862.2 |
| Cao, Feng et al. (2008) Transcriptional and functional profiling of human embryonic stem cell-derived cardiomyocytes.; PLoS One, 3: e3474 |
|
GSE13834 |
| Cao, Feng et al. (2013) The transcriptomic architecture of mouse Sertoli cell clone embryos reveals temporal–spatial-specific reprogramming.; Reproduction, 145: 277-88 |
|
GSE41358 |
| Cao, Huateng et al. (2020) Retinoid X Receptor α Regulates DHA-Dependent Spinogenesis and Functional Synapse Formation In Vivo.; Cell Rep, 31: 107649 |
|
GSE136788 |
| Cao, Huifen et al. (2024) Genome-wide profiles of DNA damage represent highly accurate predictors of mammalian age.; Aging Cell, [no vol.]: e14122 |
|
GSE239751 |
| Cao, Jingli et al. (2021) Deficiency of intellectual disability-related gene Brpf1 reduced inhibitory neurotransmission in MGE-derived GABAergic interneurons.; G3 (Bethesda), [no vol.]: [no pages] |
|
GSE157903 |
| Cao, Li et al. (2025) KPNA2 promotes osteosarcoma progression by regulating the alternative splicing of DDX3X mediated by YBX1.; Oncogene, 44: 2186-2200 |
|
GSE263410 |
| Cao, Maize C et al. (2023) A panel of TDP-43-regulated splicing events verifies loss of TDP-43 function in amyotrophic lateral sclerosis brain tissue.; Neurobiol Dis, 185: 106245 |
|
GSE223747 |
| Cao, Muqing et al. (2023) An actin filament branching surveillance system regulates cell cycle progression, cytokinesis and primary ciliogenesis.; Nat Commun, 14: 1687 |
|
GSE225003 |
| Cao, Peng et al. (2021) Early-life inflammation promotes depressive symptoms in adolescence via microglial engulfment of dendritic spines.; Neuron, 109: 2573-2589.e9 |
|
GSE176140 |
| Cao, Qian et al. (2023) Astrocytic CXCL5 hinders microglial phagocytosis of myelin debris and aggravates white matter injury in chronic cerebral ischemia.; J Neuroinflammation, 20: 105 |
|
GSE220106 |
| Cañada-García, Daniel et al. (2025) Gene expression analyses in mouse sensory ganglia determine a crucial role of NGF/TrkA in knee osteoarthritis chronification.; Osteoarthritis Cartilage, [no vol.]: [no pages] |
|
GSE291152 |
| Çakan, Elif et al. (2023) TLR9 ligand sequestration by chemokine CXCL4 negatively affects central B cell tolerance.; J Exp Med, 220: [no pages] |
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GSE227639 |
| Çakır, Işın et al. (2022) Sulforaphane reduces obesity by reversing leptin resistance.; Elife, 11: [no pages] |
|
GSE181477 |