List of all 21,853 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Xi, Jian-Fei et al. (2025) m6A modification regulates cell proliferation via reprogramming the balance between glycolysis and pentose phosphate pathway.; Commun Biol, 8: 496 |
|
GSE261509.2 GSE261509.3 |
| Xi, Liqiang et al. (2008) Whole genome exon arrays identify differential expression of alternatively spliced, cancer-related genes in lung cancer.; Nucleic Acids Res, 36: 6535-47 |
|
GSE12236 |
| Xia, Bo et al. (2024) On the genetic basis of tail-loss evolution in humans and apes.; Nature, 626: 1042-1048 |
|
GSE252196 |
| Xia, Dan et al. (2022) Novel App knock-in mouse model shows key features of amyloid pathology and reveals profound metabolic dysregulation of microglia.; Mol Neurodegener, 17: 41 |
|
GSE158152 GSE158153 |
| Xia, Jia et al. (2025) Repair of Isoaspartyl Residues by PCMT1 and Kidney Fibrosis.; J Am Soc Nephrol, 36: 1278-1294 |
|
GSE248435.2 GSE248435.1 |
| Xia, Meng et al. (2019) HAND2-mediated epithelial maintenance and integrity in cardiac outflow tract morphogenesis.; Development, 146: [no pages] |
|
GSE131362 |
| Xia, Xin et al. (2020) MEF2 transcription factors differentially contribute to retinal ganglion cell loss after optic nerve injury.; PLoS One, 15: e0242884 |
|
GSE142881 |
| Xia, Yunhui et al. (2022) Maternal DBP exposure promotes synaptic formation in offspring by activating astrocytes via the AKT/NF-κB/IL-6/JAK2/STAT3 signaling pathway.; Sci Total Environ, 829: 154437 |
|
GSE188707 |
| Xia, Yuxing et al. (2022) Pathogenic tau recruits wild-type tau into brain inclusions and induces gut degeneration in transgenic SPAM mice.; Commun Biol, 5: 446 |
|
GSE198667 |
| Xia, Zhangchuan et al. (2025) The PURB-HOTAIR complex regulates p53-dependent promoter-specific transcriptional activation.; Nat Struct Mol Biol, 32: 1669-1682 |
|
GSE295588 |
| Xian, Wa et al. (2005) Pleiotropic effects of FGFR1 on cell proliferation, survival, and migration in a 3D mammary epithelial cell model.; J Cell Biol, 171: 663-73 |
|
GSE3260 |
| Xian, Weiwei et al. (2021) Deficiency of Intellectual Disability-Related GeneBrpf1Attenuated Hippocampal Excitatory Synaptic Transmission and Impaired Spatial Learning and Memory Ability.; Front Cell Dev Biol, 9: 711792 |
|
GSE174600 |
| Xiang, Chaomei et al. (2021) RP58 Represses Transcriptional Programs Linked to Nonneuronal Cell Identity and Glioblastoma Subtypes in Developing Neurons.; Mol Cell Biol, 41: e0052620 |
|
GSE121260 |
| Xiang, Guangxin et al. (2007) Identification of activity-dependent gene expression profiles reveals specific subsets of genes induced by different routes of Ca(2+) entry in cultured rat cortical neurons.; J Cell Physiol, 212: 126-36 |
|
GSE6254 |
| Xiang, Jiawen et al. (2023) ATF4 May Be Essential for Adaption of the Ocular Lens to Its Avascular Environment.; Cells, 12: [no pages] |
|
GSE206760 |
| Xiang, Yangfei et al. (2017) Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration.; Cell Stem Cell, 21: 383-398.e7 |
|
GSE97881 |
| Xiang, Yangfei et al. (2020) Dysregulation of BRD4 Function Underlies the Functional Abnormalities of MeCP2 Mutant Neurons.; Mol Cell, 79: 84-98.e9 |
|
GSE117511 |
| Xiao, Guanxi et al. (2022) IL-17/CXCL5 signaling within the oligovascular niche mediates human and mouse white matter injury.; Cell Rep, 41: 111848 |
|
GSE217354 GSE217355 |
| Xiao, Hui et al. (2025) Suppression of 6-pyruvoyl-tetrahydropterin synthase promotes remyelination in multiple sclerosis.; BMC Med, 23: 618 |
|
GSE251827 |
| Xiao, Jianchun et al. (2011) Differential effects of three canonical Toxoplasma strains on gene expression in human neuroepithelial cells.; Infect Immun, 79: 1363-73 |
|
GSE22986 |
| Xiao, Lanlan et al. (2025) Super-omics and PCAS reveal tumor-like molecular landscape of rheumatoid arthritis; bioRxiv, [no vol.]: [no pages] |
|
GSE285865 |
| Xiao, Le et al. (2013) BMP signaling specifies the development of a large and fast CNS synapse.; Nat Neurosci, 16: 856-64 |
|
GSE46500 |
| Xiao, Ling et al. (2024) m6A mRNA methylation in brown fat regulates systemic insulin sensitivity via an inter-organ prostaglandin signaling axis independent of UCP1.; Cell Metab, 36: 2207-2227.e9 |
|
GSE232491.1 GSE232491.2 |
| Xiao, Mei-Fang et al. (2021) A biomarker-authenticated model of schizophrenia implicating NPTX2 loss of function.; Sci Adv, 7: eabf6935 |
|
GSE150671 |
| Xiao, Mei-Sheng et al. (2024) Genome-scale exon perturbation screens uncover exons critical for cell fitness.; Mol Cell, 84: 2553-2572.e19 |
|
GSE244340 |
| Xiao, Mu et al. (2024) Smad4 sequestered in SFPQ condensates prevents TGF-β tumor-suppressive signaling.; Dev Cell, 59: 48-63.e8 |
|
GSE236125 |
| Xiao, Peng et al. (2008) In vivo genome-wide expression study on human circulating B cells suggests a novel ESR1 and MAPK3 network for postmenopausal osteoporosis.; J Bone Miner Res, 23: 644-54 |
|
GSE7429 |
| Xiao, Sheng et al. (2014) Small-molecule ROR?t antagonists inhibit T helper 17 cell transcriptional network by divergent mechanisms.; Immunity, 40: 477-89 |
|
GSE56240 |
| Xiao, Wenzhong et al. (2011) A genomic storm in critically injured humans.; J Exp Med, 208: 2581-90 |
|
GSE36809 |
| Xiao, Xing et al. (2021) Orexin receptors 1 and 2 in serotonergic neurons differentially regulate peripheral glucose metabolism in obesity.; Nat Commun, 12: 5249 |
|
GSE168203 |
| Xiao, Yang et al. (2023) STING mediates hepatocyte pyroptosis in liver fibrosis by Epigenetically activating the NLRP3 inflammasome.; Redox Biol, 62: 102691 |
|
GSE217363 |
| Xiao, Ying-Ying et al. (2024) Cardiopulmonary progenitors facilitate cardiac repair via exosomal transfer of miR-27b-3p targeting the SIK1-CREB1 axis.; Cell Prolif, 57: e13593 |
|
GSE232989 GSE232665 |
| Xicoy, Helena et al. (2020) Explorative Combined Lipid and Transcriptomic Profiling of Substantia Nigra and Putamen in Parkinson's Disease.; Cells, 9: [no pages] |
|
GSE136666 |
| Xie, Guoguang et al. (2026) A molecularly defined basalo-prefrontal-thalamic circuit regulates sensory and affective dimensions of pain in male mice.; Nat Commun, 17: [no pages] |
|
GSE243136 |
| Xie, Guojia et al. (2023) MLL3/MLL4 methyltransferase activities control early embryonic development and embryonic stem cell differentiation in a lineage-selective manner.; Nat Genet, 55: 693-705 |
|
GSE154475 |
| Xie, Huafeng et al. (2014) Polycomb repressive complex 2 regulates normal hematopoietic stem cell function in a developmental-stage-specific manner.; Cell Stem Cell, 14: 68-80 |
|
GSE51084 |
| Xie, Huimin et al. (2017) Chromatin status and transcription factor binding to gonadotropin promoters in gonadotrope cell lines.; Reprod Biol Endocrinol, 15: 86 |
|
GSE104513 |
| Xie, Jianjiang et al. (2020) GPD1 Enhances the Anticancer Effects of Metformin by Synergistically Increasing Total Cellular Glycerol-3-Phosphate.; Cancer Res, 80: 2150-2162 |
|
GSE146982 |
| Xie, Junhua et al. (2023) Gut microbiota regulates blood-cerebrospinal fluid barrier function and Aβ pathology.; EMBO J, [no vol.]: e111515 |
|
GSE228655 |
| Xie, Kan et al. (2017) Every-other-day feeding extends lifespan but fails to delay many symptoms of aging in mice.; Nat Commun, 8: 155 |
|
GSE96644 |
| Xie, Kan et al. (2022) Deep phenotyping and lifetime trajectories reveal limited effects of longevity regulators on the aging process in C57BL/6J mice.; Nat Commun, 13: 6830 |
|
GSE168068 |
| Xie, Kan et al. (2026) Selective vulnerability of the aging cholinergic system to amyloid pathology revealed by induced APP overexpression.; J Neuroinflammation, 23: 39 |
|
GSE271806 |
| Xie, Lili et al. (2023) The oncomodulin receptor ArmC10 enables axon regeneration in mice after nerve injury and neurite outgrowth in human iPSC-derived sensory neurons.; Sci Transl Med, 15: eadg6241 |
|
GSE221489 |
| Xie, Man-Xiu et al. (2025) Histone lactylation regulates DOCK4 to control heat nociception and supports Dynein-mediated Nav1.7 trafficking.; Nat Commun, 16: 7165 |
|
GSE283287 |
| Xie, Ning et al. (2021) In vitro expanded skeletal myogenic progenitors from pluripotent stem cell-derived teratomas have high engraftment capacity.; Stem Cell Reports, 16: 2900-2912 |
|
GSE182508 |
| Xie, Qi et al. (2016) RBPJ maintains brain tumor-initiating cells through CDK9-mediated transcriptional elongation.; J Clin Invest, 126: 2757-72 |
|
GSE79735 |
| Xie, Qi et al. (2018) N6-methyladenine DNA Modification in Glioblastoma.; Cell, 175: 1228-1243.e20 |
|
GSE117632 |
| Xie, Shu-Tao et al. (2023) Proinflammatory activation of microglia in the cerebellum hyperexcites Purkinje cells to trigger ataxia.; Pharmacol Res, 191: 106773 |
|
GSE221991 |
| Xie, Ting et al. (2024) RNA-Seq Reveals Transcriptome Changes Following Zika Virus Infection in Fetal Brains inc-FlipKnockdown Mice.; Viruses, 16: [no pages] |
|
GSE254990 |
| Xie, Wei et al. (2026) GLS1 governs vascular smooth muscle cell phenotypic switching and aortic dissection via glutamate metabolism.; JCI Insight, 11: [no pages] |
|
GSE324926 |
| Xie, Wenhui et al. (2022) Single-Cell RNA Sequencing and Assay for Transposase-Accessible Chromatin Using Sequencing Reveals Cellular and Molecular Dynamics of Aortic Aging in Mice.; Arterioscler Thromb Vasc Biol, 42: 156-171 |
|
GSE164585 |
| Xie, Xiaomei et al. (2023) SRSF2 in Sertoli cells is essential for testicular development and spermatogenesis in mice.; FASEB J, 37: e22918 |
|
GSE218969 |
| Xie, Xiaomei et al. (2024) PARN Maintains RNA Stability to Regulate Insulin Maturation and GSIS in Pancreatic β Cells.; Adv Sci (Weinh), 11: e2407774 |
|
GSE248389 |
| Xie, Xin et al. (2018) β-actin regulates a heterochromatin landscape essential for optimal induction of neuronal programs during direct reprograming.; PLoS Genet, 14: e1007846 |
|
GSE113733 |
| Xie, Xuemei et al. (2023) Maternal Embryonic Leucine Zipper Kinase is Associated with Metastasis in Triple-negative Breast Cancer.; Cancer Res Commun, 3: 1078-1092 |
|
GSE227774 |
| Xie, Xuqin et al. (2023) APR-246 Enhances Colorectal Cancer Sensitivity to Radiotherapy.; Mol Cancer Ther, 22: 947-961 |
|
GSE232305 |
| Xie, Yajun et al. (2025) Astrocyte specification in the mouse septum is shaped by both developmental origin and local signals.; Nat Neurosci, 28: 1676-1687 |
|
GSE281480 |
| Xie, Yang et al. (2011) Robust gene expression signature from formalin-fixed paraffin-embedded samples predicts prognosis of non-small-cell lung cancer patients.; Clin Cancer Res, 17: 5705-14 |
|
GSE29013 |
| Xie, Yuan et al. (2014) Defining the role of oxygen tension in human neural progenitor fate.; Stem Cell Reports, 3: 743-57 |
|
GSE61842 |
| Xie, Yuanyuan et al. (2017) Lef1-dependent hypothalamic neurogenesis inhibits anxiety.; PLoS Biol, 15: e2002257 |
|
GSE98519.1 |
| Xie, Yuanyuan et al. (2018) COP1/DET1/ETS axis regulates ERK transcriptome and sensitivity to MAPK inhibitors.; J Clin Invest, 128: 1442-1457 |
|
GSE80352 |
| Xie, Zhixin et al. (2025) Critical role of Oas1g and STAT1 pathways in neuroinflammation: insights for Alzheimer's disease therapeutics.; J Transl Med, 23: 182 |
|
GSE261007 |
| Xie, Zhuojun et al. (2025) Bilayer Heterogeneous Methacrylated Silk Fibroin Scaffold with Antibacterial and Osteoinductive Functions for Treating Infectious Bone Defects.; ACS Appl Mater Interfaces, 17: 58045-58063 |
|
GSE308538 |
| Xin, Frances et al. (2018) Mice exposed to bisphenol A exhibit depressive-like behavior with neurotransmitter and neuroactive steroid dysfunction.; Horm Behav, 102: 93-104 |
|
GSE102849 |
| Xin, Yanling et al. (2022) m6A epitranscriptomic modification regulates neural progenitor-to-glial cell transition in the retina.; Elife, 11: [no pages] |
|
GSE180813 |
| Xin, Yu et al. (2025) 6-Hydroxygenistein Ameliorates High Altitude Brain Injury via Activating PI3K/AKT Signaling Pathway Based on Transcriptomic Analysis and Experimental Validation.; Drug Des Devel Ther, 19: 8641-8656 |
|
GSE307180 |
| Xing, Chao et al. (2021) Biallelic variants in RNU12 cause CDAGS syndrome.; Hum Mutat, 42: 1042-1052 |
|
GSE155099 |
| Xing, Lei et al. (2023) Autism-linked UBE3A gain-of-function mutation causes interneuron and behavioral phenotypes when inherited maternally or paternally in mice.; Cell Rep, 42: 112706 |
|
GSE201731 |
| Xing, Luzhou et al. (2014) Alopecia areata is driven by cytotoxic T lymphocytes and is reversed by JAK inhibition.; Nat Med, 20: 1043-9 |
|
GSE45551 GSE45514 |
| Xing, Mingming et al. (2024) Paraventricular hypothalamic RUVBL2 neurons suppress appetite by enhancing excitatory synaptic transmission in distinct neurocircuits.; Nat Commun, 15: 8939 |
|
GSE252308 |
| Xing, Yue et al. (2026) Peripheral immune-inducer dendritic cells drive early-life allergic inflammation.; Nature, 652: 1308-1317 |
|
GSE273131 GSE299934 |
| Xiong, Feng et al. (2021) RNA m6A modification orchestrates a LINE-1-host interaction that facilitates retrotransposition and contributes to long gene vulnerability.; Cell Res, 31: 861-885 |
|
GSE137752 |
| Xiong, Le et al. (2022) Oct4 differentially regulates chromatin opening and enhancer transcription in pluripotent stem cells.; Elife, 11: [no pages] |
|
GSE174774.2 |
| Xiong, Shunbin et al. (2022) Differential Gain-of-Function Activity of Three p53 Hotspot Mutants In Vivo.; Cancer Res, 82: 1926-1936 |
|
GSE198802 |
| Xiong, Yu-Quan et al. (2009) Human hepatocellular carcinoma tumor-derived endothelial cells manifest increased angiogenesis capability and drug resistance compared with normal endothelial cells.; Clin Cancer Res, 15: 4838-46 |
|
GSE51401 |
| Xiong, Yuguang et al. (2017) A Comparison of mRNA Sequencing with Random Primed and 3'-Directed Libraries.; Sci Rep, 7: 14626 |
|
GSE98428 |
| Xiong, Yunjie et al. (2026) PAD4 promotes macrophage migration to aggravate tubulointerstitial injury in diabetic kidney disease.; Mol Ther, 34: 511-526 |
|
GSE279745 |
| Xu, An et al. (2023) Rewired m6A epitranscriptomic networks link mutant p53 to neoplastic transformation.; Nat Commun, 14: 1694 |
|
GSE163088 |
| Xu, Baijie et al. (2025) Orthopediaregulates melanocortin 4 receptor transcription and energy homeostasis.; Sci Transl Med, 17: eadr6459 |
|
GSE244791 |
| Xu, Bin et al. (2010) Multiple roles for the non-coding RNA SRA in regulation of adipogenesis and insulin sensitivity.; PLoS One, 5: e14199 |
|
GSE21594 |
| Xu, Bin et al. (2013) Derepression of a neuronal inhibitor due to miRNA dysregulation in a schizophrenia-related microdeletion.; Cell, 152: 262-75 |
|
GSE29767.2 GSE29767.1 |
| Xu, Biyang et al. (2024) Role of Kir5.1 (Kcnj16) Channels in Regulating Renal Ammonia Metabolism during Metabolic Acidosis in Dahl Salt-Sensitive Rats.; Am J Pathol, 195: 115-125 |
|
GSE244052 |
| Xu, Cheng et al. (2021) TP53 wild-type/PPM1D mutant diffuse intrinsic pontine gliomas are sensitive to a MDM2 antagonist.; Acta Neuropathol Commun, 9: 178 |
|
GSE189152 |
| Xu, Cheng et al. (2024) Systematic dissection of sequence features affecting binding specificity of a pioneer factor reveals binding synergy between FOXA1 and AP-1.; Mol Cell, 84: 2838-2855.e10 |
|
GSE247414 |
| Xu, Chenxi et al. (2021) Cistrome analysis of YY1 uncovers a regulatory axis of YY1:BRD2/4-PFKP during tumorigenesis of advanced prostate cancer.; Nucleic Acids Res, 49: 4971-4988 |
|
GSE94013 |
| Xu, Chong et al. (2024) TaqTth-hpRNA: a novel compact RNA-targeting tool for specific silencing of pathogenic mRNA.; Genome Biol, 25: 179 |
|
GSE236392 GSE269592 |
| Xu, Chuan et al. (2018) Human-specific features of spatial gene expression and regulation in eight brain regions.; Genome Res, 28: 1097-1110 |
|
GSE100796 |
| Xu, Chunxiao et al. (2015) NSCLC Driven by DDR2 Mutation Is Sensitive to Dasatinib and JQ1 Combination Therapy.; Mol Cancer Ther, 14: 2382-9 |
|
GSE64907 |
| Xu, Congling et al. (2019) Synergy between arsenic trioxide and JQ1 on autophagy in pancreatic cancer.; Oncogene, 38: 7249-7265 |
|
GSE124069 |
| Xu, Cunshuan et al. (2011) Role of the autonomic nervous system in rat liver regeneration.; Cell Mol Neurobiol, 31: 527-40 |
|
GSE26138 |