List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Pingul, Bianca Y et al. (2022) Dissection of the MEF2D-IRF8 transcriptional circuit dependency in acute myeloid leukemia.; iScience, 25: 105139 |
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GSE186131 |
| Pinheiro da Silva, Fabiano et al. (2023) Transcriptome analysis of six tissues obtained post-mortem from sepsis patients.; J Cell Mol Med, 27: 3157-3167 |
|
GSE237861 |
| Pinho, Raquel et al. (2016) Gene Expression Differences in Peripheral Blood of Parkinson's Disease Patients with Distinct Progression Profiles.; PLoS One, 11: e0157852 |
|
GSE80599 |
| Pinho, Raquel et al. (2018) Nuclear localization and phosphorylation modulate pathological effects of alpha-synuclein.; Hum Mol Genet, 28: 31-50 |
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GSE95427.2 |
| Pinson, Marisa R et al. (2021) Divergent and overlapping hippocampal and cerebellar transcriptome responses following developmental ethanol exposure during the secondary neurogenic period.; Alcohol Clin Exp Res, 45: 1408-1423 |
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GSE166196 |
| Pinson, Marisa R et al. (2022) Prenatal alcohol exposure contributes to negative pregnancy outcomes by altering fetal vascular dynamics and the placental transcriptome.; Alcohol Clin Exp Res, 46: 1036-1049 |
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GSE195489 |
| Pinson, Marisa R et al. (2023) Prenatal alcohol alters inflammatory signatures in enteric portal tissues following adult-onset cerebrovascular ischemic stroke.; iScience, 26: 107920 |
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GSE217173 |
| Pintacuda, Greta et al. (2023) Protein interaction studies in human induced neurons indicate convergent biology underlying autism spectrum disorders.; Cell Genom, 3: 100250 |
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GSE178896 |
| Pinter, Theresa et al. (2022) Comprehensive CRISPR-Cas9 screen identifies factors which are important for plasmablast development.; Front Immunol, 13: 979606 |
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GSE203436 |
| Pinto, Bruno et al. (2020) Rescuing Over-activated Microglia Restores Cognitive Performance in Juvenile Animals of the Dp(16) Mouse Model of Down Syndrome.; Neuron, 108: 887-904.e12 |
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GSE137939 |
| Pinto, Luisa et al. (2008) Prospective isolation of functionally distinct radial glial subtypes--lineage and transcriptome analysis.; Mol Cell Neurosci, 38: 15-42 |
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GSE8034 |
| Pinto, Luisa et al. (2009) AP2gamma regulates basal progenitor fate in a region- and layer-specific manner in the developing cortex.; Nat Neurosci, 12: 1229-37 |
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GSE12134 |
| Pinto, Mariana Tomazini et al. (2014) Genes related to antiviral activity, cell migration, and lysis are differentially expressed in CD4(+) T cells in human t cell leukemia virus type 1-associated myelopathy/tropical spastic paraparesis patients.; AIDS Res Hum Retroviruses, 30: 610-22 |
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GSE38537 |
| Pinto, Navin et al. (2023) Impact of Genomic and Clinical Factors on Outcome of Children ≥18 Months of Age with Stage 3 Neuroblastoma with Unfavorable Histology and without MYCN Amplification: A Children's Oncology Group (COG) Report.; Clin Cancer Res, 29: 1546-1556 |
|
GSE218527 |
| Pinyol, Magda et al. (2007) Inactivation of RB1 in mantle-cell lymphoma detected by nonsense-mediated mRNA decay pathway inhibition and microarray analysis.; Blood, 109: 5422-9 |
|
GSE6728 |
| Piovan, Erich et al. (2013) Direct reversal of glucocorticoid resistance by AKT inhibition in acute lymphoblastic leukemia.; Cancer Cell, 24: 766-76 |
|
GSE32215 GSE41062 |
| Piras, Ignazio S et al. (2019) Transcriptome Changes in the Alzheimer's Disease Middle Temporal Gyrus: Importance of RNA Metabolism and Mitochondria-Associated Membrane Genes.; J Alzheimers Dis, 70: 691-713 |
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GSE132903 |
| Piras, Ignazio S et al. (2020) Transcriptional profiling of multiple system atrophy cerebellar tissue highlights differences between the parkinsonian and cerebellar sub-types of the disease.; Acta Neuropathol Commun, 8: 76 |
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GSE199724 GSE199258 GSE199715 |
| Piret, Sian E et al. (2021) Loss of proximal tubular transcription factor Krüppel-like factor 15 exacerbates kidney injury through loss of fatty acid oxidation.; Kidney Int, 100: 1250-1267 |
|
GSE150098 |
| Pirhaji, Leila et al. (2017) Identifying therapeutic targets by combining transcriptional data with ordinal clinical measurements.; Nat Commun, 8: 623 |
|
GSE98739 |
| Pirklbauer, Markus et al. (2019) Unraveling reno-protective effects of SGLT2 inhibition in human proximal tubular cells.; Am J Physiol Renal Physiol, 316: F449-F462 |
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GSE118337 |
| Piro, Justin R et al. (2018) Inhibition of 2-AG hydrolysis differentially regulates blood brain barrier permeability after injury.; J Neuroinflammation, 15: 142 |
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GSE113855 |
| Pirone, Jason R et al. (2012) Age-associated gene expression in normal breast tissue mirrors qualitative age-at-incidence patterns for breast cancer.; Cancer Epidemiol Biomarkers Prev, 21: 1735-44 |
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GSE33526 |
| Pirzgalska, Roksana M et al. (2025) Neuroepithelial VIP-VIPR1 interactions differentially control enteric type 1 and type 2 immunity.; Nat Immunol, 26: 2244-2255 |
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GSE308754 |
| Pisarsky, Laura et al. (2016) Targeting Metabolic Symbiosis to Overcome Resistance to Anti-angiogenic Therapy.; Cell Rep, 15: 1161-74 |
|
GSE78698 |
| Piscazzi, Annamaria et al. (2022) Differential and divergent activity of insulin-like growth factor binding protein 6 in platinum-sensitive versus platinum-resistant high-grade serous ovarian carcinoma cell lines.; Oncol Lett, 23: 185 |
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GSE189717 |
| Pisciottani, Alessandra et al. (2023) Neuronal models of TDP-43 proteinopathy display reduced axonal translation, increased oxidative stress, and defective exocytosis.; Front Cell Neurosci, 17: 1253543 |
|
GSE239419 |
| Pise-Masison, Cynthia A et al. (2009) Gene expression profiling of ATL patients: compilation of disease-related genes and evidence for TCF4 involvement in BIRC5 gene expression and cell viability.; Blood, 113: 4016-26 |
|
GSE14317 |
| Piskova, Teodora et al. (2026) Cell loss disrupts mechanical homeostasis to drive retinal pigment epithelium ageing-like phenotype in vitro.; Nat Commun, 17: [no pages] |
|
GSE297557 |
| Pita, J M et al. (2009) Gene expression profiling associated with the progression to poorly differentiated thyroid carcinomas.; Br J Cancer, 101: 1782-91 |
|
GSE53157 |
| Pita-Thomas, Wolfgang et al. (2019) HDAC5 promotes optic nerve regeneration by activating the mTOR pathway.; Exp Neurol, 317: 271-283 |
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GSE120257 |
| Pita-Thomas, Wolfgang et al. (2021) Genome-wide chromatin accessibility analyses provide a map for enhancing optic nerve regeneration.; Sci Rep, 11: 14924 |
|
GSE163563 |
| Pitolli, Consuelo et al. (2023) MYC up-regulation confers vulnerability to dual inhibition of CDK12 and CDK13 in high-risk Group 3 medulloblastoma.; J Exp Clin Cancer Res, 42: 214 |
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GSE225375 |
| Pitroda, Sean P et al. (2009) STAT1-dependent expression of energy metabolic pathways links tumour growth and radioresistance to the Warburg effect.; BMC Med, 7: 68 |
|
GSE15845 |
| Piunti, Andrea et al. (2017) Therapeutic targeting of polycomb and BET bromodomain proteins in diffuse intrinsic pontine gliomas.; Nat Med, 23: 493-500 |
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GSE78801 |
| Piva, Roberto et al. (2006) Functional validation of the anaplastic lymphoma kinase signature identifies CEBPB and BCL2A1 as critical target genes.; J Clin Invest, 116: 3171-82 |
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GSE6184 |
| Piwecka, Monika et al. (2017) Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function.; Science, 357: [no pages] |
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GSE93130.1 GSE93097 |
| Pjanic, Milos et al. (2013) Nuclear Factor I genomic binding associates with chromatin boundaries.; BMC Genomics, 14: 99 |
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GSE15871 |
| Plager, Douglas A et al. (2010) Gene transcription changes in asthmatic chronic rhinosinusitis with nasal polyps and comparison to those in atopic dermatitis.; PLoS One, 5: e11450 |
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GSE23552 |
| Plaisier, Christopher L et al. (2009) A systems genetics approach implicates USF1, FADS3, and other causal candidate genes for familial combined hyperlipidemia.; PLoS Genet, 5: e1000642 |
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GSE17170 GSE17300 |
| Plaisier, Christopher L et al. (2009) Galanin preproprotein is associated with elevated plasma triglycerides.; Arterioscler Thromb Vasc Biol, 29: 147-52 |
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GSE13506 |
| Plana-Carmona, Marcos et al. (2022) The trophectoderm acts as a niche for the inner cell mass through C/EBPα-regulated IL-6 signaling.; Stem Cell Reports, 17: 1991-2004 |
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GSE202613 |
| Planas, Raquel et al. (2015) Central role of Th2/Tc2 lymphocytes in pattern II multiple sclerosis lesions.; Ann Clin Transl Neurol, 2: 875-93 |
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GSE60914 |
| Planche, Anne et al. (2011) Identification of prognostic molecular features in the reactive stroma of human breast and prostate cancer.; PLoS One, 6: e18640 |
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GSE26910 |
| Planell, Núria et al. (2013) Transcriptional analysis of the intestinal mucosa of patients with ulcerative colitis in remission reveals lasting epithelial cell alterations.; Gut, [no vol.]: [no pages] |
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GSE38713 |
| Planques, Anabelle et al. (2021) OTX2 Homeoprotein Functions in Adult Choroid Plexus.; Int J Mol Sci, 22: [no pages] |
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GSE157386 |
| Plastini, Melanie J et al. (2022) Transcriptional abnormalities in induced pluripotent stem cell-derived oligodendrocytes of individuals with primary progressive multiple sclerosis.; Front Cell Neurosci, 16: 972144 |
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GSE211739 |
| Plate, Lars et al. (2016) Small molecule proteostasis regulators that reprogram the ER to reduce extracellular protein aggregation.; Elife, 5: [no pages] |
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GSE84636 |
| Plekhanova, Olga et al. (2019) Oligonucleotide Microarrays Identified Potential Regulatory Genes Related to Early Outward Arterial Remodeling Induced by Tissue Plasminogen Activator.; Front Physiol, 10: 493 |
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GSE126627 |
| Plemel, Jason R et al. (2020) Microglia response following acute demyelination is heterogeneous and limits infiltrating macrophage dispersion.; Sci Adv, 6: eaay6324 |
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GSE121484 |
| Plotnik, Joshua P et al. (2014) ETS1 is a genome-wide effector of RAS/ERK signaling in epithelial cells.; Nucleic Acids Res, 42: 11928-40 |
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GSE59022 |
| Plumbly, William et al. (2022) Derivation of nociceptive sensory neurons from hiPSCs with early patterning and temporally controlledNEUROG2overexpression.; Cell Rep Methods, 2: 100341 |
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GSE187345 |
| Plunk, Elizabeth C et al. (2025) Gestational and Lactation Exposure to Perfluorohexanoic Acid Results in Sex-Specific Changes in the Cerebellum in Mice.; Int J Mol Sci, 26: [no pages] |
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GSE301375 |
| Pluvinage, John V et al. (2019) CD22 blockade restores homeostatic microglial phagocytosis in ageing brains.; Nature, 568: 187-192 |
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GSE127542 GSE127543 |
| Pluvinage, John V et al. (2021) The CD22-IGF2R interaction is a therapeutic target for microglial lysosome dysfunction in Niemann-Pick type C.; Sci Transl Med, 13: eabg2919 |
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GSE184243 |
| Poché, Ross A et al. (2016) RONIN Is an Essential Transcriptional Regulator of Genes Required for Mitochondrial Function in the Developing Retina.; Cell Rep, 14: 1684-1697 |
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GSE74822 |
| Pociask, Derek A et al. (2013) IL-22 is essential for lung epithelial repair following influenza infection.; Am J Pathol, 182: 1286-96 |
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GSE41549 |
| Poczobutt, Joanna M et al. (2016) Expression Profiling of Macrophages Reveals Multiple Populations with Distinct Biological Roles in an Immunocompetent Orthotopic Model of Lung Cancer.; J Immunol, 196: 2847-59 |
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GSE76033 |
| Poddubskaya, Elena et al. (2024) Biomarkers of success of anti-PD-(L)1 immunotherapy for non-small cell lung cancer derived from RNA- and whole-exome sequencing: results of a prospective observational study on a cohort of 85 patients.; Front Immunol, 15: 1493877 |
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GSE274975 |
| Podleśny-Drabiniok, Anna et al. (2024) BHLHE40/41 regulate microglia and peripheral macrophage responses associated with Alzheimer's disease and other disorders of lipid-rich tissues.; Nat Commun, 15: 2058 |
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GSE253992 GSE254233 GSE253943 |
| Podleśny-Drabiniok, Anna et al. (2025) Cytokine-induced reprogramming of human macrophages toward Alzheimer's disease-relevant molecular and cellular phenotypes in vitro.; Cell Rep, 44: 115909 |
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GSE273482 |
| Podowski, Megan et al. (2012) Angiotensin receptor blockade attenuates cigarette smoke-induced lung injury and rescues lung architecture in mice.; J Clin Invest, 122: 229-40 |
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GSE33561 |
| Poelkens, Fleur et al. (2013) Upregulation of skeletal muscle inflammatory genes links inflammation with insulin resistance in women with the metabolic syndrome.; Exp Physiol, 98: 1485-94 |
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GSE43760 |
| Pogozelski, Andrew R et al. (2009) p38gamma mitogen-activated protein kinase is a key regulator in skeletal muscle metabolic adaptation in mice.; PLoS One, 4: e7934 |
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GSE17620 |
| Poh, Boonmin et al. (2019) Foxr2 promotes formation of CNS-embryonal tumors in a Trp53-deficient background.; Neuro Oncol, 21: 993-1004 |
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GSE121366 |
| Pohar, Jelka et al. (2022) Antigen receptor-engineered Tregs inhibit CNS autoimmunity in cell therapy using nonredundant immune mechanisms in mice.; Eur J Immunol, 52: 1335-1349 |
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GSE164460 |
| Pohjanvirta, Raimo et al. (2008) Genome-wide effects of acute progressive feed restriction in liver and white adipose tissue.; Toxicol Appl Pharmacol, [no vol.]: [no pages] |
|
GSE9121 |
| Pohlers, Dirk et al. (2007) Constitutive upregulation of the transforming growth factor-beta pathway in rheumatoid arthritis synovial fibroblasts.; Arthritis Res Ther, 9: R59 |
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GSE7669 |
| Pohodich, Amy E et al. (2018) Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity.; Elife, 7: [no pages] |
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GSE111703 GSE107357 |
| Poirier, Enzo Z et al. (2021) An isoform of Dicer protects mammalian stem cells against multiple RNA viruses.; Science, 373: 231-236 |
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GSE173946 |
| Poirot, Laurent et al. (2004) Natural killer cells distinguish innocuous and destructive forms of pancreatic islet autoimmunity.; Proc Natl Acad Sci U S A, 101: 8102-7 |
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GSE1085 |
| Poitelon, Yannick et al. (2016) YAP and TAZ control peripheral myelination and the expression of laminin receptors in Schwann cells.; Nat Neurosci, 19: 879-87 |
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GSE79115 |
| Poitou, Christine et al. (2015) Bariatric Surgery Induces Disruption in Inflammatory Signaling Pathways Mediated by Immune Cells in Adipose Tissue: A RNA-Seq Study.; PLoS One, 10: e0125718 |
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GSE65540 |
| Pojo, Marta et al. (2015) A transcriptomic signature mediated by HOXA9 promotes human glioblastoma initiation, aggressiveness and resistance to temozolomide.; Oncotarget, 6: 7657-74 |
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GSE56517 |
| Pol, Suyog U et al. (2017) Network-Based Genomic Analysis of Human Oligodendrocyte Progenitor Differentiation.; Stem Cell Reports, 9: 710-723 |
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GSE36431 |
| Polak, Katarzyna et al. (2023) CD4+regulatory T cells lacking Helios and Eos.; Biochem Biophys Res Commun, 674: 83-89 |
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GSE162023 |
| Polakovicova, Iva et al. (2014) Multiple regulatory roles of the mouse transmembrane adaptor protein NTAL in gene transcription and mast cell physiology.; PLoS One, 9: e105539 |
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GSE40731 |
| Polanco, Juan Carlos et al. (2013) Identification of unsafe human induced pluripotent stem cell lines using a robust surrogate assay for pluripotency.; Stem Cells, [no vol.]: [no pages] |
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GSE15283 |
| Poletti, Valentina et al. (2015) Genome-Wide Definition of Promoter and Enhancer Usage during Neural Induction of Human Embryonic Stem Cells.; PLoS One, 10: e0126590 |
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GSE61266 |
| Polex-Wolf, Joseph et al. (2018) Hypothalamic loss of Snord116 recapitulates the hyperphagia of Prader-Willi syndrome.; J Clin Invest, 128: 960-969 |
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GSE102992 GSE106210 |
| Poli, Alessandro et al. (2023) PIP4K2B is mechanoresponsive and controls heterochromatin-driven nuclear softening through UHRF1.; Nat Commun, 14: 1432 |
|
GSE200206 |
| Poliandri, Ariel et al. (2017) Generation of kisspeptin-responsive GnRH neurons from human pluripotent stem cells.; Mol Cell Endocrinol, 447: 12-22 |
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GSE86990 |
| Poliani, Pietro Luigi et al. (2015) TREM2 sustains microglial expansion during aging and response to demyelination.; J Clin Invest, 125: 2161-70 |
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GSE66926 |
| Polito, Vinicia A et al. (2014) Selective clearance of aberrant tau proteins and rescue of neurotoxicity by transcription factor EB.; EMBO Mol Med, 6: 1142-60 |
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GSE53480 |
| Pollak, Julia et al. (2013) ASCL1 reprograms mouse Muller glia into neurogenic retinal progenitors.; Development, 140: 2619-31 |
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GSE45835 |
| Pollard, Steven M et al. (2009) Glioma stem cell lines expanded in adherent culture have tumor-specific phenotypes and are suitable for chemical and genetic screens.; Cell Stem Cell, 4: 568-80 |
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GSE15209 |
| Poller, Wolfram C et al. (2022) Brain motor and fear circuits regulate leukocytes during acute stress.; Nature, 607: 578-584 |
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GSE201390 |
| Pollheimer, Jürgen et al. (2013) Interleukin-33 drives a proinflammatory endothelial activation that selectively targets nonquiescent cells.; Arterioscler Thromb Vasc Biol, 33: e47-55 |
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GSE37624 |
| Pollina, Elizabeth A et al. (2023) A NPAS4-NuA4 complex couples synaptic activity to DNA repair.; Nature, 614: 732-741 |
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GSE175964.2 GSE175964.1 |