List of all 17,744 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Varghese, Binny V et al. (2013) Loss of the repressor REST in uterine fibroids promotes aberrant G protein-coupled receptor 10 expression and activates mammalian target of rapamycin pathway.; Proc Natl Acad Sci U S A, 110: 2187-92 |
|
GSE41386 |
| Varghese, Johnna F et al. (2024) Human regulatory memory B cells defined by expression of TIM-1 and TIGIT are dysfunctional in multiple sclerosis.; Front Immunol, 15: 1360219 |
|
GSE261258 |
| Varley, Katherine E et al. (2014) Recurrent read-through fusion transcripts in breast cancer.; Breast Cancer Res Treat, 146: 287-97 |
|
GSE58135 |
| Varol, Diana et al. (2017) Dicer Deficiency Differentially Impacts Microglia of the Developing and Adult Brain.; Immunity, 46: 1030-1044.e8 |
|
GSE98142 |
| Varrault, Annie et al. (2017) Identification of Plagl1/Zac1 binding sites and target genes establishes its role in the regulation of extracellular matrix genes and the imprinted gene network.; Nucleic Acids Res, 45: 10466-10480 |
|
GSE99409 |
| Varshney, Mukesh K et al. (2017) Role of estrogen receptor beta in neural differentiation of mouse embryonic stem cells.; Proc Natl Acad Sci U S A, 114: E10428-E10437 |
|
GSE139428 GSE103312 |
| Vartanian, Kristina et al. (2009) Gene expression profiling of whole blood: comparison of target preparation methods for accurate and reproducible microarray analysis.; BMC Genomics, 10: 2 |
|
GSE13292 |
| Varum, Sandra et al. (2019) Yin Yang 1 Orchestrates a Metabolic Program Required for Both Neural Crest Development and Melanoma Formation.; Cell Stem Cell, 24: 637-653.e9 |
|
GSE125480 |
| Vasciaveo, Alessandro et al. (2023) OncoLoop: A Network-Based Precision Cancer Medicine Framework.; Cancer Discov, 13: 386-409 |
|
GSE184427 |
| Vasek, Michael J et al. (2016) A complement-microglial axis drives synapse loss during virus-induced memory impairment.; Nature, 534: 538-43 |
|
GSE72139 |
| Vasek, Michael J et al. (2023) Local translation in microglial processes is required for efficient phagocytosis.; Nat Neurosci, 26: 1185-1195 |
|
GSE161460 |
| Vashishtha, Malini et al. (2013) Targeting H3K4 trimethylation in Huntington disease.; Proc Natl Acad Sci U S A, 110: E3027-36 |
|
GSE48962 |
| Vasilache, A M et al. (2013) Minor changes in gene expression in the mouse preoptic hypothalamic region by inflammation-induced prostaglandin E2.; J Neuroendocrinol, 25: 635-43 |
|
GSE43181 |
| Vasiljevic, Alexandre et al. (2013) Molecular characterization of central neurocytomas: potential markers for tumor typing and progression.; Neuropathology, [no vol.]: [no pages] |
|
GSE35499 |
| Vassallo, I et al. (2016) WIF1 re-expression in glioblastoma inhibits migration through attenuation of non-canonical WNT signaling by downregulating the lncRNA MALAT1.; Oncogene, 35: 12-21 |
|
GSE58525 |
| Vassena, Rita et al. (2007) Tough beginnings: alterations in the transcriptome of cloned embryos during the first two cell cycles.; Dev Biol, 304: 75-89 |
|
GSE6595 |
| Vassena, Rita et al. (2011) Waves of early transcriptional activation and pluripotency program initiation during human preimplantation development.; Development, 138: 3699-709 |
|
GSE29397 |
| Vastagh, Csaba et al. (2020) Gonadal Cycle-Dependent Expression of Genes Encoding Peptide-, Growth Factor-, and Orphan G-Protein-Coupled Receptors in Gonadotropin- Releasing Hormone Neurons of Mice.; Front Mol Neurosci, 13: 594119 |
|
GSE66806 |
| Vasudevan, Harish N et al. (2015) Receptor tyrosine kinases modulate distinct transcriptional programs by differential usage of intracellular pathways.; Elife, 4: [no pages] |
|
GSE66484 |
| Vathipadiekal, Vinod et al. (2012) Identification of a potential ovarian cancer stem cell gene expression profile from advanced stage papillary serous ovarian cancer.; PLoS One, 7: e29079 |
|
GSE33874 |
| Vatine, Gad D et al. (2017) Modeling Psychomotor Retardation using iPSCs from MCT8-Deficient Patients Indicates a Prominent Role for the Blood-Brain Barrier.; Cell Stem Cell, 20: 831-843.e5 |
|
GSE97324 |
| Vatine, Gad D et al. (2019) Human iPSC-Derived Blood-Brain Barrier Chips Enable Disease Modeling and Personalized Medicine Applications.; Cell Stem Cell, 24: 995-1005.e6 |
|
GSE129290 |
| Vats, Abhishek et al. (2022) Nonretinoid chaperones improve rhodopsin homeostasis in a mouse model of retinitis pigmentosa.; JCI Insight, 7: [no pages] |
|
GSE179754 |
| Vats, Kavita et al. (2022) Sensory Nerves Impede the Formation of Tertiary Lymphoid Structures and Development of Protective Antimelanoma Immune Responses.; Cancer Immunol Res, 10: 1141-1154 |
|
GSE193065 |
| Vaughan-Jackson, Alun et al. (2021) Differentiation of human induced pluripotent stem cells to authentic macrophages using a defined, serum-free, open-source medium.; Stem Cell Reports, 16: 1735-1748 |
|
GSE197865 |
| Vaughan-Shaw, Peter G et al. (2022) Vitamin D treatment induces in vitro and ex vivo transcriptomic changes indicating anti-tumor effects.; FASEB J, 36: e22082 |
|
GSE181644 |
| Vawter, Marquis P et al. (2004) Gender-specific gene expression in post-mortem human brain: localization to sex chromosomes.; Neuropsychopharmacology, 29: 373-84 |
|
GSE2164 |
| Vaz, Michelle et al. (2017) Chronic Cigarette Smoke-Induced Epigenomic Changes Precede Sensitization of Bronchial Epithelial Cells to Single-Step Transformation by KRAS Mutations.; Cancer Cell, 32: 360-376.e6 |
|
GSE101863 GSE101862 |
| Vazquez-Chona, Felix R et al. (2005) Genetic networks controlling retinal injury.; Mol Vis, 11: 958-70 |
|
GSE1928 |
| Vecsey, Christopher G et al. (2012) Genomic analysis of sleep deprivation reveals translational regulation in the hippocampus.; Physiol Genomics, 44: 981-91 |
|
GSE33302 |
| Vedantham, Vasanth et al. (2015) RNA sequencing of mouse sinoatrial node reveals an upstream regulatory role for Islet-1 in cardiac pacemaker cells.; Circ Res, 116: 797-803 |
|
GSE65658 |
| Vedin, Inger et al. (2012) Effects of DHA-rich n-3 fatty acid supplementation on gene expression in blood mononuclear leukocytes: the OmegAD study.; PLoS One, 7: e35425 |
|
GSE29680 |
| Vedunova, Maria et al. (2022) DC vaccines loaded with glioma cells killed by photodynamic therapy induce Th17 anti-tumor immunity and provide a four-gene signature for glioma prognosis.; Cell Death Dis, 13: 1062 |
|
GSE218081 |
| Veena, Mysore S et al. (2024) Gigaxonin Suppresses Epithelial-to-Mesenchymal Transition of Human Cancer Through Downregulation of Snail.; Cancer Res Commun, 4: 706-722 |
|
GSE179424 |
| Veerapandian, Raja et al. (2023) Mycobacterium smegmatis secreting methionine sulfoxide reductase A (MsrA) modulates cellular processes in mouse macrophages.; Biochimie, 211: 1-15 |
|
GSE212228 |
| Veerapandian, Veeramohan et al. (2018) Directed Evolution of Reprogramming Factors by Cell Selection and Sequencing.; Stem Cell Reports, 11: 593-606 |
|
GSE107987 |
| Veeraragavan, Surabi et al. (2016) Loss of MeCP2 in the rat models regression, impaired sociability and transcriptional deficits of Rett syndrome.; Hum Mol Genet, 25: 3284-3302 |
|
GSE83323 |
| Vega-Avelaira, David et al. (2009) Differential regulation of immune responses and macrophage/neuron interactions in the dorsal root ganglion in young and adult rats following nerve injury.; Mol Pain, 5: 70 |
|
GSE15041 |
| Vegi, Naidu M et al. (2016) MEIS2 Is an Oncogenic Partner in AML1-ETO-Positive AML.; Cell Rep, 16: 498-507 |
|
GSE81328 GSE81174 |
| Veiga, Diogo F T et al. (2022) MonoallelicHeb/Tcf12Deletion Reduces the Requirement for NOTCH1 Hyperactivation in T-Cell Acute Lymphoblastic Leukemia.; Front Immunol, 13: 867443 |
|
GSE198506 |
| Velasco, Silvia et al. (2019) Individual brain organoids reproducibly form cell diversity of the human cerebral cortex.; Nature, 570: 523-527 |
|
GSE129519 |
| Velho, Sérgia et al. (2014) Dissecting the signaling pathways associated with the oncogenic activity of MLK3 P252H mutation.; BMC Cancer, 14: 182 |
|
GSE54611 |
| Veljkovic, Emilija et al. (2011) Chronic exposure to cigarette smoke condensate in vitro induces epithelial to mesenchymal transition-like changes in human bronchial epithelial cells, BEAS-2B.; Toxicol In Vitro, 25: 446-53 |
|
GSE14461 |
| Velkey, J Matthew et al. (2013) Expression of Neurogenin 1 in mouse embryonic stem cells directs the differentiation of neuronal precursors and identifies unique patterns of down-stream gene expression.; Dev Dyn, 242: 230-53 |
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GSE42883 |
| Vella, Pietro et al. (2012) Yin Yang 1 extends the Myc-related transcription factors network in embryonic stem cells.; Nucleic Acids Res, 40: 3403-18 |
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GSE31784 |
| Velmeshev, Dmitry et al. (2019) Single-cell genomics identifies cell type-specific molecular changes in autism.; Science, 364: 685-689 |
|
Velmeshev-2019.2 Velmeshev-2019.1 |
| Veloso, Artur et al. (2013) Genome-wide transcriptional effects of the anti-cancer agent camptothecin.; PLoS One, 8: e78190 |
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GSE48678 |
| Veloso, Artur et al. (2014) Rate of elongation by RNA polymerase II is associated with specific gene features and epigenetic modifications.; Genome Res, 24: 896-905 |
|
GSE55534 |
| Velychko, Sergiy et al. (2019) Excluding Oct4 from Yamanaka Cocktail Unleashes the Developmental Potential of iPSCs.; Cell Stem Cell, 25: 737-753.e4 |
|
GSE137001 |
| Velz, Julia et al. (2025) Mapping naturally presented T cell antigens in medulloblastoma based on integrative multi-omics.; Nat Commun, 16: 1364 |
|
GSE238195 |
| Velíšková, J et al. (2015) Oestradiol Regulates Neuropeptide Y Release and Gene Coupling with the GABAergic and Glutamatergic Synapses in the Adult Female Rat Dentate Gyrus.; J Neuroendocrinol, 27: 911-20 |
|
GSE60013 |
| Vemuri, Kiranmayi et al. (2024) Diet-induced obesity mediated through Estrogen-Related Receptor α is independent of intestinal function.; bioRxiv, [no vol.]: [no pages] |
|
GSE269825 |
| Venanzi, Emily S et al. (2008) The variable immunological self: genetic variation and nongenetic noise in Aire-regulated transcription.; Proc Natl Acad Sci U S A, 105: 15860-5 |
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GSE8564 |
| Vencken, Sebastian F et al. (2014) An integrated analysis of the SOX2 microRNA response program in human pluripotent and nullipotent stem cell lines.; BMC Genomics, 15: 711 |
|
GSE59234 |
| Vendrell, Julie A et al. (2012) ZNF217 is a marker of poor prognosis in breast cancer that drives epithelial-mesenchymal transition and invasion.; Cancer Res, 72: 3593-606 |
|
GSE35511 |
| Venere, Monica et al. (2012) Sox1 marks an activated neural stem/progenitor cell in the hippocampus.; Development, 139: 3938-49 |
|
GSE39992 |
| Veneri, Francesca A et al. (2022) A novel mouse model of CMT1B identifies hyperglycosylation as a new pathogenetic mechanism.; Hum Mol Genet, 31: 4255-4274 |
|
GSE196979 |
| Venkadakrishnan, Varadha Balaji et al. (2024) Lineage-specific canonical and non-canonical activity of EZH2 in advanced prostate cancer subtypes.; Nat Commun, 15: 6779 |
|
GSE256043 |
| Venkatanarayan, Avinashnarayan et al. (2015) IAPP-driven metabolic reprogramming induces regression of p53-deficient tumours in vivo.; Nature, 517: 626-30 |
|
GSE60827 |
| Venkateswaran, Niranjan et al. (2024) Tryptophan fuels MYC-dependent liver tumorigenesis through indole 3-pyruvate synthesis.; Nat Commun, 15: 4266 |
|
GSE213377 |
| Venosa, Alessandro et al. (2021) Role of CCR2+Myeloid Cells in Inflammation Responses Driven by Expression of a Surfactant Protein-C Mutant in the Alveolar Epithelium.; Front Immunol, 12: 665818 |
|
GSE166300 |
| Venugopal, Abhilash K et al. (2012) Transcriptomic Profiling of Medial Temporal Lobe Epilepsy.; J Proteomics Bioinform, 5: [no pages] |
|
GSE25453 |
| Vera-Ramirez, Laura et al. (2013) Transcriptional shift identifies a set of genes driving breast cancer chemoresistance.; PLoS One, 8: e53983 |
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GSE28694 GSE28583 GSE28826 |
| Veras, Matthew A et al. (2019) Loss of ENT1 increases cell proliferation in the annulus fibrosus of the intervertebral disc.; J Cell Physiol, 234: 13705-13719 |
|
GSE124650 |
| Verbeke, Stéphanie et al. (2023) Antitumor Effects of PRMT5 Inhibition in Sarcomas.; Cancer Res Commun, 3: 2211-2220 |
|
GSE243904 |
| Verbitsky, Miguel et al. (2004) Altered hippocampal transcript profile accompanies an age-related spatial memory deficit in mice.; Learn Mem, 11: 253-60 |
|
GSE5078 |
| Verdeguer, Francisco et al. (2015) Brown Adipose YY1 Deficiency Activates Expression of Secreted Proteins Linked to Energy Expenditure and Prevents Diet-Induced Obesity.; Mol Cell Biol, 36: 184-96 |
|
GSE68429 GSE70562 GSE68382 |
| Verdejo-Torres, Odette et al. (2024) Cysteine Rich Intestinal Protein 2 is a copper-responsive regulator of skeletal muscle differentiation.; bioRxiv, [no vol.]: [no pages] |
|
GSE252158 |
| Verdoni, Angela M et al. (2008) Effect of destrin mutations on the gene expression profile in vivo.; Physiol Genomics, 34: 9-21 |
|
GSE9743 |
| Verdugo, Ricardo A et al. (2010) Serious limitations of the QTL/microarray approach for QTL gene discovery.; BMC Biol, 8: 96 |
|
GSE22042 |
| Vereide, David T et al. (2014) An expandable, inducible hemangioblast state regulated by fibroblast growth factor.; Stem Cell Reports, 3: 1043-57 |
|
GSE60896 |
| Verginadis, Ioannis I et al. (2022) A stromal Integrated Stress Response activates perivascular cancer-associated fibroblasts to drive angiogenesis and tumour progression.; Nat Cell Biol, 24: 940-953 |
|
GSE159017 GSE159012 |
| Verhagen, Lilly M et al. (2013) A predictive signature gene set for discriminating active from latent tuberculosis in Warao Amerindian children.; BMC Genomics, 14: 74 |
|
GSE41055 |
| Verheijden, Simon et al. (2015) Identification of a chronic non-neurodegenerative microglia activation state in a mouse model of peroxisomal ?-oxidation deficiency.; Glia, 63: 1606-20 |
|
GSE66420 |
| Verheyen, An et al. (2018) Genetically Engineered iPSC-Derived FTDP-17 MAPT Neurons Display Mutation-Specific Neurodegenerative and Neurodevelopmental Phenotypes.; Stem Cell Reports, 11: 363-379 |
|
GSE104013 GSE106075 |
| Verhofstad, Nicole et al. (2010) Benzo(a)pyrene induces similar gene expression changes in testis of DNA repair proficient and deficient mice.; BMC Genomics, 11: 333 |
|
GSE17979 |
| Verkerk, Annemieke J M H et al. (2009) Mutation in the AP4M1 gene provides a model for neuroaxonal injury in cerebral palsy.; Am J Hum Genet, 85: 40-52 |
|
GSE16447 |
| Verkerke, Marloes et al. (2024) Transcriptomic and morphological maturation of human astrocytes in cerebral organoids.; Glia, 72: 362-374 |
|
GSE244778 |
| Verma, Aditi et al. (2023) Genes critical for development and differentiation of dopaminergic neurons are downregulated in Parkinson's disease.; J Neural Transm (Vienna), 130: 495-512 |
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GSE206308.1 GSE206308.2 |
| Verma, Nirmal et al. (2023) Aβ efflux impairment and inflammation linked to cerebrovascular accumulation of amyloid-forming amylin secreted from pancreas.; Commun Biol, 6: 2 |
|
GSE221450 |
| Verma, Ravinder et al. (2023) Olig1/2-Expressing Intermediate Lineage Progenitors Are Predisposed to PTEN/p53-Loss-Induced Gliomagenesis and Harbor Specific Therapeutic Vulnerabilities.; Cancer Res, 83: 890-905 |
|
GSE200889 GSE200888 |
| Verma-Gaur, Jiyoti et al. (2012) Negative feedback regulation of antigen receptors through calmodulin inhibition of E2A.; J Immunol, 188: 6175-83 |
|
GSE35747 |
| Vermeij, W P et al. (2016) Restricted diet delays accelerated ageing and genomic stress in DNA-repair-deficient mice.; Nature, 537: 427-431 |
|
GSE77321 |
| Vermeiren, Simon et al. (2023) Prdm12 represses the expression of the visceral neuron determinants Phox2a/b in developing somatosensory ganglia.; iScience, 26: 108364 |
|
GSE211929 |
| Vernet, Nadège et al. (2014) The expression of Y-linked Zfy2 in XY mouse oocytes leads to frequent meiosis 2 defects, a high incidence of subsequent early cleavage stage arrest and infertility.; Development, 141: 855-66 |
|
GSE52218 |
| Vernia, Santiago et al. (2014) The PPAR?-FGF21 hormone axis contributes to metabolic regulation by the hepatic JNK signaling pathway.; Cell Metab, 20: 512-25 |
|
GSE55190 |
| Vázquez Salgado, A M et al. (2022) In Vivo Screen Identifies Liver X Receptor Alpha Agonism Potentiates Sorafenib Killing of Hepatocellular Carcinoma.; Gastro Hep Adv, 1: 905-908 |
|
GSE151412 |
| Vázquez, Ramiro et al. (2017) The bromodomain inhibitor OTX015 (MK-8628) exerts anti-tumor activity in triple-negative breast cancer models as single agent and in combination with everolimus.; Oncotarget, 8: 7598-7613 |
|
GSE79721 |