List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Thomas, Elizabeth A et al. (2011) In vivo cell-autonomous transcriptional abnormalities revealed in mice expressing mutant huntingtin in striatal but not cortical neurons.; Hum Mol Genet, 20: 1049-60 |
|
GSE25232 |
| Thomas, Hala Elnakat et al. (2012) mTOR inhibitors synergize on regression, reversal of gene expression, and autophagy in hepatocellular carcinoma.; Sci Transl Med, 4: 139ra84 |
|
GSE37129 |
| Thomas, Monzy et al. (2010) Endoplasmic reticulum stress responses differ in meninges and associated vasculature, striatum, and parietal cortex after a neurotoxic amphetamine exposure.; Synapse, 64: 579-93 |
|
GSE23093 |
| Thomas, Russell S et al. (2007) A method to integrate benchmark dose estimates with genomic data to assess the functional effects of chemical exposure.; Toxicol Sci, [no vol.]: [no pages] |
|
GSE7002 |
| Thomas, Russell S et al. (2007) Application of genomic biomarkers to predict increased lung tumor incidence in 2-year rodent cancer bioassays.; Toxicol Sci, 97: 55-64 |
|
GSE6116 |
| Thomas, Russell S et al. (2009) Use of short-term transcriptional profiles to assess the long-term cancer-related safety of environmental and industrial chemicals.; Toxicol Sci, 112: 311-21 |
|
GSE17933 |
| Thomas, Russell S et al. (2011) Application of transcriptional benchmark dose values in quantitative cancer and noncancer risk assessment.; Toxicol Sci, 120: 194-205 |
|
GSE18858 |
| Thomas, Russell S et al. (2013) Cross-species transcriptomic analysis of mouse and rat lung exposed to chloroprene.; Toxicol Sci, 131: 629-40 |
|
GSE40795.2 GSE40795.1 |
| Thomas, Sithara et al. (2025) Epigenetic Reactivation of CNS Endothelial Developmental Programs Triggers Adult Brain Angiogenesis, Promotes Post-Stroke Revascularization and Neuronal Regeneration.; bioRxiv, [no vol.]: [no pages] |
|
GSE301448 GSE301293 |
| Thomas, Tom M et al. (2021) Elevated Asparagine Biosynthesis Drives Brain Tumor Stem Cell Metabolic Plasticity and Resistance to Oxidative Stress.; Mol Cancer Res, 19: 1375-1388 |
|
GSE171163 |
| Thompson, Brian et al. (2021) Impaired GSH biosynthesis disrupts eye development, lens morphogenesis and PAX6 function.; Ocul Surf, 22: 190-203 |
|
GSE175394 |
| Thompson, Carol L et al. (2010) Molecular and anatomical signatures of sleep deprivation in the mouse brain.; Front Neurosci, 4: 165 |
|
GSE23628 |
| Thompson, Cayla A et al. (2017) GATA4 Is Sufficient to Establish Jejunal Versus Ileal Identity in the Small Intestine.; Cell Mol Gastroenterol Hepatol, 3: 422-446 |
|
GSE75870 |
| Thompson, Derick et al. (2020) The Lyme disease bacterium, Borrelia burgdorferi, stimulates an inflammatory response in human choroid plexus epithelial cells.; PLoS One, 15: e0234993 |
|
GSE153261 |
| Thompson, Derick et al. (2023) Transcriptome and methylome of the supraoptic nucleus provides insights into the age-dependent loss of neuronal plasticity.; Front Aging Neurosci, 15: 1223273 |
|
GSE231616 |
| Thompson, Dylan et al. (2010) Time course of changes in inflammatory markers during a 6-mo exercise intervention in sedentary middle-aged men: a randomized-controlled trial.; J Appl Physiol (1985), 108: 769-79 |
|
GSE12385 |
| Thompson, Eric M et al. (2024) Elucidating cellular response to treatment with viral immunotherapies in pediatric high-grade glioma and medulloblastoma.; Transl Oncol, 40: 101875 |
|
GSE233949 |
| Thoms, Julie A I et al. (2021) Disruption of a GATA2-TAL1-ERG regulatory circuit promotes erythroid transition in healthy and leukemic stem cells.; Blood, 138: 1441-1455 |
|
GSE158795 |
| Thomsen, Inesa et al. (2021) RUNX1 Regulates a Transcription Program That Affects the Dynamics of Cell Cycle Entry of Naive Resting B Cells.; J Immunol, 207: 2976-2991 |
|
GSE162702 |
| Thomson, Carolyn A et al. (2014) Peripheral inflammation is associated with remote global gene expression changes in the brain.; J Neuroinflammation, 11: 73 |
|
GSE159770 |
| Thomson, Carolyn A et al. (2018) Expression of the Atypical Chemokine Receptor ACKR4 Identifies a Novel Population of Intestinal Submucosal Fibroblasts That Preferentially Expresses Endothelial Cell Regulators.; J Immunol, 201: 215-229 |
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GSE113665 |
| Thomson, Errol M et al. (2009) Toxicogenomic analysis of susceptibility to inhaled urban particulate matter in mice with chronic lung inflammation.; Part Fibre Toxicol, 6: 6 |
|
GSE11037 |
| Thomson, Sophie R et al. (2017) Cell-Type-Specific Translation Profiling Reveals a Novel Strategy for Treating Fragile X Syndrome.; Neuron, 95: 550-563.e5 |
|
GSE101823 |
| Thong, Kai Xin et al. (2023) Adrenaline blocks key cell cycle genes and exhibits antifibrotic and vasoconstrictor effects in glaucoma surgery.; Exp Eye Res, 233: 109561 |
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GSE213217 |
| Thornton, Seraphim R et al. (2014) Polycomb Repressive Complex 2 regulates lineage fidelity during embryonic stem cell differentiation.; PLoS One, 9: e110498 |
|
GSE53506 |
| Thorrez, Lieven et al. (2008) Using ribosomal protein genes as reference: a tale of caution.; PLoS One, 3: e1854 |
|
GSE9954 |
| Thorrez, Lieven et al. (2011) Tissue-specific disallowance of housekeeping genes: the other face of cell differentiation.; Genome Res, 21: 95-105 |
|
GSE24940 GSE24207 |
| Thorsteinsson, Morten et al. (2012) Gene expression profiles in stages II and III colon cancers: application of a 128-gene signature.; Int J Colorectal Dis, 27: 1579-86 |
|
GSE31595 |
| Thota, Lakshmi Narasimha et al. (2017) Immune regulation by oral tolerance induces alternate activation of macrophages and reduces markers of plaque destabilization in Apobtm2Sgy/Ldlrtm1Her/Jmice.; Sci Rep, 7: 3997 |
|
GSE110670 |
| Thrupp, Nicola et al. (2020) Single-Nucleus RNA-Seq Is Not Suitable for Detection of Microglial Activation Genes in Humans.; Cell Rep, 32: 108189 |
|
GSE153807 |
| Thudium, Samuel et al. (2022) Identification of a transcriptional signature found in multiple models of ASD and related disorders.; Genome Res, [no vol.]: [no pages] |
|
GSE193663 |
| Thuong, Nguyen Thuy Thuong et al. (2008) Identification of tuberculosis susceptibility genes with human macrophage gene expression profiles.; PLoS Pathog, 4: e1000229 |
|
GSE11199 |
| Thurman, Robert E et al. (2012) The accessible chromatin landscape of the human genome.; Nature, 489: 75-82 |
|
GSE17778 |
| Thümmler, Katja et al. (2019) Polarizing receptor activation dissociates fibroblast growth factor 2 mediated inhibition of myelination from its neuroprotective potential.; Acta Neuropathol Commun, 7: 212 |
|
GSE65466 |
| Tiacci, Enrico et al. (2012) Analyzing primary Hodgkin and Reed-Sternberg cells to capture the molecular and cellular pathogenesis of classical Hodgkin lymphoma.; Blood, [no vol.]: [no pages] |
|
GSE40160 |
| Tian, Bing et al. (2005) Identification of direct genomic targets downstream of the nuclear factor-kappaB transcription factor mediating tumor necrosis factor signaling.; J Biol Chem, 280: 17435-48 |
|
GSE2624 |
| Tian, Bing et al. (2018) The NFκB subunit RELA is a master transcriptional regulator of the committed epithelial-mesenchymal transition in airway epithelial cells.; J Biol Chem, 293: 16528-16545 |
|
GSE84135 |
| Tian, Chan et al. (2014) Analyses of the similarity and difference of global gene expression profiles in cortex regions of three neurodegenerative diseases: sporadic Creutzfeldt-Jakob disease (sCJD), fatal familial insomnia (FFI), and Alzheimer's disease (AD).; Mol Neurobiol, 50: 473-81 |
|
GSE40562 |
| Tian, Erming et al. (2003) The role of the Wnt-signaling antagonist DKK1 in the development of osteolytic lesions in multiple myeloma.; N Engl J Med, 349: 2483-94 |
|
GSE755 |
| Tian, Feng et al. (2022) Core transcription programs controlling injury-induced neurodegeneration of retinal ganglion cells.; Neuron, 110: 2607-2624.e8 |
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GSE190667 GSE184547 |
| Tian, Fu-Ju et al. (2016) The YY1/MMP2 axis promotes trophoblast invasion at the maternal-fetal interface.; J Pathol, 239: 36-47 |
|
GSE76862 |
| Tian, Jun et al. (2015) Dexamethasone affects mouse olfactory mucosa gene expression and attenuates genes related to neurite outgrowth.; Int Forum Allergy Rhinol, 5: 907-18 |
|
GSE68151 |
| Tian, Meng et al. (2008) hem6: an ENU-induced recessive hypochromic microcytic anemia mutation in the mouse.; Blood, 112: 4308-13 |
|
GSE16174 |
| Tian, Shuang et al. (2024) Atractylenolide II Suppresses Glycolysis and Induces Apoptosis by Blocking the PADI3-ERK Signaling Pathway in Endometrial Cancer Cells.; Molecules, 29: [no pages] |
|
GSE252780 |
| Tian, Xiaofeng et al. (2024) Transcriptomic analysis to identify genes associated with hypothalamus vulnerability in aging mice with cognitive decline.; Behav Brain Res, 465: 114943 |
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GSE240365 |
| Tian, Yingfang et al. (2012) Correlations of gene expression with ratings of inattention and hyperactivity/impulsivity in Tourette syndrome: a pilot study.; BMC Med Genomics, 5: 49 |
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GSE30470 |
| Tiane, Assia et al. (2023) From methylation to myelination: epigenomic and transcriptomic profiling of chronic inactive demyelinated multiple sclerosis lesions.; Acta Neuropathol, 146: 283-299 |
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GSE224377 |
| Tiberi, Alexia et al. (2023) Reduced levels of NGF shift astrocytes toward a neurotoxic phenotype.; Front Cell Dev Biol, 11: 1165125 |
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GSE108103 |
| Tice, Abigail L et al. (2021) Binge alcohol disrupts skeletal muscle core molecular clock independent of glucocorticoids.; Am J Physiol Endocrinol Metab, 321: E606-E620 |
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GSE183665 |
| Tichet, Mélanie et al. (2023) Bispecific PD1-IL2v and anti-PD-L1 break tumor immunity resistance by enhancing stem-like tumor-reactive CD8+T cells and reprogramming macrophages.; Immunity, 56: 162-179.e6 |
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GSE197854.1 GSE197854.2 |
| Tiemessen, Machteld M et al. (2012) The nuclear effector of Wnt-signaling, Tcf1, functions as a T-cell-specific tumor suppressor for development of lymphomas.; PLoS Biol, 10: e1001430 |
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GSE54976 |
| Tierney, Emily P et al. (2003) Activation of the protein kinase A pathway in human endometrial stromal cells reveals sequential categorical gene regulation.; Physiol Genomics, 16: 47-66 |
|
GSE403 |
| Tiihonen, Jari et al. (2021) Molecular signaling pathways underlying schizophrenia.; Schizophr Res, 232: 33-41 |
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GSE174704 |
| Tijet, Nathalie et al. (2006) Aryl hydrocarbon receptor regulates distinct dioxin-dependent and dioxin-independent gene batteries.; Mol Pharmacol, [no vol.]: [no pages] |
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GSE10082 |
| Tiklová, Katarína et al. (2021) Disease Duration Influences Gene Expression in Neuromelanin-Positive Cells From Parkinson's Disease Patients.; Front Mol Neurosci, 14: 763777 |
|
GSE182622 |
| Tilley, Ann E et al. (2009) Down-regulation of the notch pathway in human airway epithelium in association with smoking and chronic obstructive pulmonary disease.; Am J Respir Crit Care Med, 179: 457-66 |
|
GSE7832 |
| Tillotson, Rebekah et al. (2021) Neuronal non-CG methylation is an essential target for MeCP2 function.; Mol Cell, 81: 1260-1275.e12 |
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GSE152800 |
| Tilton, Susan C et al. (2013) Diet-induced obesity reprograms the inflammatory response of the murine lung to inhaled endotoxin.; Toxicol Appl Pharmacol, 267: 137-48 |
|
GSE38092 |
| Tilton, Susan C et al. (2013) Impaired transcriptional response of the murine heart to cigarette smoke in the setting of high fat diet and obesity.; Chem Res Toxicol, 26: 1034-42 |
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GSE47022 GSE38093 |
| Timaxian, Colin et al. (2020) The health status alters the pituitary function and reproduction of mice in aCxcr2-dependent manner.; Life Sci Alliance, 3: [no pages] |
|
GSE144231 |
| Timilsina, Santosh et al. (2022) The antidepressant imipramine inhibits breast cancer growth by targeting estrogen receptor signaling and DNA repair events.; Cancer Lett, 540: 215717 |
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GSE190814 |
| Timme, S et al. (2014) STAT3 expression, activity and functional consequences of STAT3 inhibition in esophageal squamous cell carcinomas and Barrett's adenocarcinomas.; Oncogene, 33: 3256-66 |
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GSE47763 |
| Timmerman, Luika A et al. (2013) Glutamine sensitivity analysis identifies the xCT antiporter as a common triple-negative breast tumor therapeutic target.; Cancer Cell, 24: 450-65 |
|
GSE48984 |
| Timmons, James A et al. (2007) Myogenic gene expression signature establishes that brown and white adipocytes originate from distinct cell lineages.; Proc Natl Acad Sci U S A, 104: 4401-6 |
|
GSE7032 |
| Timofeeva, Olga A et al. (2009) Enhanced expression of SOS1 is detected in prostate cancer epithelial cells from African-American men.; Int J Oncol, 35: 751-60 |
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GSE17356 |
| Timofeeva, Olga A et al. (2013) STAT3 suppresses transcription of proapoptotic genes in cancer cells with the involvement of its N-terminal domain.; Proc Natl Acad Sci U S A, 110: 1267-72 |
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GSE25867 GSE25866 |
| Ting, Pamela Y et al. (2024) A molecular glue degrader of the WIZ transcription factor for fetal hemoglobin induction.; Science, 385: 91-99 |
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GSE247096 |
| Ting, Shun-Ming et al. (2025) Retinoid-X-Receptor as a Mediator of Poststroke Recovery by Reversing Age-Associated Phenotypes of Microglia/Hematogenous Macrophages.; J Neurosci, 45: [no pages] |
|
GSE287142 |
| Tiniakou, Ioanna et al. (2024) Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation.; Sci Immunol, 9: eadi1023 |
|
GSE259392 GSE202584 |
| Tinterri, Andrea et al. (2018) Active intermixing of indirect and direct neurons builds the striatal mosaic.; Nat Commun, 9: 4725 |
|
GSE120898 |
| Tintle, Suzanne et al. (2011) Reversal of atopic dermatitis with narrow-band UVB phototherapy and biomarkers for therapeutic response.; J Allergy Clin Immunol, 128: 583-593.e4 |
|
GSE27887 |
| Tiong, Sheena Yin Xin et al. (2019) Kcnab1Is Expressed in Subplate Neurons With Unilateral Long-Range Inter-Areal Projections.; Front Neuroanat, 13: 39 |
|
GSE123351 |
| Tirode, Franck et al. (2007) Mesenchymal stem cell features of Ewing tumors.; Cancer Cell, 11: 421-9 |
|
GSE7007 |
| Tisserand, Johan et al. (2011) Tripartite motif 24 (Trim24/Tif1?) tumor suppressor protein is a novel negative regulator of interferon (IFN)/signal transducers and activators of transcription (STAT) signaling pathway acting through retinoic acid receptor ? (Rar?) inhibition.; J Biol Chem, 286: 33369-79 |
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GSE19675 |
| Titov, Anton A et al. (2019) Metformin Inhibits the Type 1 IFN Response in Human CD4+T Cells.; J Immunol, 203: 338-348 |
|
GSE119446 |
| Titus, Katelyn R et al. (2024) Cell-type-specific loops linked to RNA polymerase II elongation in human neural differentiation.; Cell Genom, 4: 100606 |
|
GSE220103 |
| Tiu, Gerald C et al. (2021) A p53-dependent translational program directs tissue-selective phenotypes in a model of ribosomopathies.; Dev Cell, 56: 2089-2102.e11 |
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GSE135722 |
| Tiveron, Marie-Catherine et al. (2017) Zic-Proteins Are Repressors of Dopaminergic Forebrain Fate in Mice andC. elegans.; J Neurosci, 37: 10611-10623 |
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GSE69693 |
| Tiwari, Bhavana et al. (2020) p53 directly represses human LINE1 transposons.; Genes Dev, 34: 1439-1451 |
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GSE159134 |
| Tiwari, Neha et al. (2013) Klf4 is a transcriptional regulator of genes critical for EMT, including Jnk1 (Mapk8).; PLoS One, 8: e57329 |
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GSE49151 |
| Tiwari, Neha et al. (2013) Sox4 is a master regulator of epithelial-mesenchymal transition by controlling Ezh2 expression and epigenetic reprogramming.; Cancer Cell, 23: 768-83 |
|
GSE44050 |
| Tiwari, Neha et al. (2018) Stage-Specific Transcription Factors Drive Astrogliogenesis by Remodeling Gene Regulatory Landscapes.; Cell Stem Cell, 23: 557-571.e8 |
|
GSE96539 |
| Tiwari, Shashi Kant et al. (2017) Zika virus infection reprograms global transcription of host cells to allow sustained infection.; Emerg Microbes Infect, 6: e24 |
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GSE93870 |
| Tiwari, Vijay K et al. (2012) Target genes of Topoisomerase II? regulate neuronal survival and are defined by their chromatin state.; Proc Natl Acad Sci U S A, 109: E934-43 |
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GSE25529 GSE27245 |
| Tiwari, Vini et al. (2024) Innate immune training restores pro-reparative myeloid functions to promote remyelination in the aged central nervous system.; Immunity, 57: 2173-2190.e8 |
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GSE230191 GSE247529 |
| Tiwari, Vinod et al. (2025) Glycerol-3-phosphate activates ChREBP, FGF21 transcription and lipogenesis in citrin deficiency.; Nat Metab, 7: 2284-2299 |
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GSE304958 |
| Tjeerdsma, Rinskje B et al. (2025) WEE1 inhibitors trigger GCN2-mediated activation of the integrated stress response.; Nat Commun, [no vol.]: [no pages] |
|
GSE291445 |
| Tobias, Ian C et al. (2025) A Sox2 enhancer cluster regulates region-specific neural fates from mouse embryonic stem cells.; G3 (Bethesda), 15: [no pages] |
|
GSE237775 |
| Toch, Mathilde et al. (2020) Onecut-dependent Nkx6.2 transcription factor expression is required for proper formation and activity of spinal locomotor circuits.; Sci Rep, 10: 996 |
|
GSE141949 |
| Tochitani, Shiro et al. (2021) GABAA Receptors and Maternally Derived Taurine Regulate the Temporal Specification of Progenitors of Excitatory Glutamatergic Neurons in the Mouse Developing Cortex.; Cereb Cortex, 31: 4554-4575 |
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GSE77648 |