List of all 22,539 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Zhang, Shiqun et al. (2021) Nonpeptidergic neurons suppress mast cells via glutamate to maintain skin homeostasis.; Cell, 184: 2151-2166.e16 |
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GSE165295 |
| Zhang, Shirley L et al. (2021) A circadian clock regulates efflux by the blood-brain barrier in mice and human cells.; Nat Commun, 12: 617 |
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GSE135874 |
| Zhang, Shuai et al. (2024) Mediator MED23 controls oligodendrogenesis and myelination by modulating Sp1/P300-directed gene programs.; Cell Discov, 10: 102 |
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GSE226122 |
| Zhang, Shuang et al. (2023) Bone marrow adipocytes fuel emergency hematopoiesis after myocardial infarction.; Nat Cardiovasc Res, 2: 1277-1290 |
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GSE169267 |
| Zhang, Shuang-Feng et al. (2022) The epigenetic state of EED-Gli3-Gli1 regulatory axis controls embryonic cortical neurogenesis.; Stem Cell Reports, 17: 2064-2080 |
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GSE169395 |
| Zhang, Shujun et al. (2023) Chromatin accessibility uncovers KRAS-driven FOSL2 promoting pancreatic ductal adenocarcinoma progression through up-regulation of CCL28.; Br J Cancer, 129: 426-443 |
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GSE190903 |
| Zhang, Shuqing et al. (2025) Phlorizin ameliorates cognitive and behavioral impairments via the microbiota-gut-brain axis in high-fat and high-fructose diet-induced obese male mice.; Brain Behav Immun, 123: 193-210 |
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GSE261887 |
| Zhang, Siming et al. (2021) Network Effects of the 15q13.3 Microdeletion on the Transcriptome and Epigenome in Human-Induced Neurons.; Biol Psychiatry, 89: 497-509 |
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GSE135131 |
| Zhang, Siwei et al. (2018) Open chromatin dynamics reveals stage-specific transcriptional networks in hiPSC-based neurodevelopmental model.; Stem Cell Res, 29: 88-98 |
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GSE102352 |
| Zhang, Siwei et al. (2020) Allele-specific open chromatin in human iPSC neurons elucidates functional disease variants.; Science, 369: 561-565 |
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GSE129017 |
| Zhang, Sui et al. (2012) Identification of the molecular basis of doxorubicin-induced cardiotoxicity.; Nat Med, 18: 1639-42 |
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GSE40289 |
| Zhang, T et al. (2017) MicroRNA-155 regulates casein kinase 1 gamma 2: a potential pathogenetic role in chronic lymphocytic leukemia.; Blood Cancer J, 7: e606 |
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GSE29605 |
| Zhang, Tao et al. (2023) Metabolic orchestration of cell death by AMPK-mediated phosphorylation of RIPK1.; Science, 380: 1372-1380 |
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GSE173938 |
| Zhang, Tianyi et al. (2012) Host genes related to paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition.; PLoS One, 7: e30044 |
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GSE24287 |
| Zhang, Tie-Yuan et al. (2018) Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus.; Nat Commun, 9: 298 |
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GSE95740 |
| Zhang, Ting et al. (2019) Human Neural Stem Cells Reinforce Hippocampal Synaptic Network and Rescue Cognitive Deficits in a Mouse Model of Alzheimer's Disease.; Stem Cell Reports, 13: 1022-1037 |
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GSE107806 |
| Zhang, Tong et al. (2009) Enzymes in the NAD+ salvage pathway regulate SIRT1 activity at target gene promoters.; J Biol Chem, 284: 20408-17 |
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GSE13458.1 GSE13458.2 GSE13459 GSE13449 |
| Zhang, Wei et al. (2009) Identification of common genetic variants that account for transcript isoform variation between human populations.; Hum Genet, 125: 81-93 |
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GSE9703 |
| Zhang, Wei et al. (2023) HRS mediates tumor immune evasion by regulating proteostasis-associated interferon pathway activation.; Cell Rep, 42: 113352 |
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GSE244678 |
| Zhang, Weiyu et al. (2025) METTL3-dependent m6A RNA methylation regulates transposable elements and represses human naïve pluripotency through transposable element-derived enhancers.; Nucleic Acids Res, 53: [no pages] |
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GSE274217 |
| Zhang, Wen Cai et al. (2012) Glycine decarboxylase activity drives non-small cell lung cancer tumor-initiating cells and tumorigenesis.; Cell, 148: 259-72 |
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GSE33198 |
| Zhang, Wen Cai et al. (2016) Tumour-initiating cell-specific miR-1246 and miR-1290 expression converge to promote non-small cell lung cancer progression.; Nat Commun, 7: 11702 |
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GSE69630 |
| Zhang, Wenbo et al. (2024) Theophylline derivatives promote primordial follicle activation via cAMP-PI3K/Akt pathway and ameliorate fertility deficits in naturally aged mice.; Int J Biol Sci, 20: 5312-5329 |
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GSE263843 |
| Zhang, Wendiao et al. (2023) Human forebrain organoids-based multi-omics analyses reveal PCCB's regulation on GABAergic system contributing to schizophrenia.; Res Sq, [no vol.]: [no pages] |
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GSE226233 |
| Zhang, Wenhao et al. (2016) Isoform Switch of TET1 Regulates DNA Demethylation and Mouse Development.; Mol Cell, 64: 1062-1073 |
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GSE77453 |
| Zhang, Wenhao et al. (2020) Inhibition of Apoptosis Reduces Diploidization of Haploid Mouse Embryonic Stem Cells during Differentiation.; Stem Cell Reports, 15: 185-197 |
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GSE148118 |
| Zhang, Wenhao et al. (2023) IL-13 Activates Cutaneous Schwann Cells to Promote CCL7-Dependent Pruritic Signaling in Atopic Dermatitis.; J Invest Dermatol, [no vol.]: [no pages] |
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GSE218436 |
| Zhang, Wenlong et al. (2023) Dietary intake of α-ketoglutarate ameliorates α-synuclein pathology in mouse models of Parkinson's disease.; Cell Mol Life Sci, 80: 155 |
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GSE214446 |
| Zhang, Wenlong et al. (2023) Neuroprotective effect of a medium-chain triglyceride ketogenic diet on MPTP-induced Parkinson's disease mice: a combination of transcriptomics and metabolomics in the substantia nigra and fecal microbiome.; Cell Death Discov, 9: 251 |
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GSE232039 |
| Zhang, Wenting et al. (2019) Macrophages reprogram after ischemic stroke and promote efferocytosis and inflammation resolution in the mouse brain.; CNS Neurosci Ther, 25: 1329-1342 |
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GSE138805 |
| Zhang, Xi et al. (2023) Irisin exhibits neuroprotection by preventing mitochondrial damage in Parkinson's disease.; NPJ Parkinsons Dis, 9: 13 |
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GSE214542 |
| Zhang, Xiang et al. (2025) SIRT5-mediated desuccinylation of PPA2 enhances HIF-1alpha-dependent adaptation to hypoxic stress and colorectal cancer metastasis.; EMBO J, 44: 2514-2540 |
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GSE276272 |
| Zhang, Xiang H-F et al. (2013) Selection of bone metastasis seeds by mesenchymal signals in the primary tumor stroma.; Cell, 154: 1060-73 |
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GSE47389 |
| Zhang, Xiangsheng et al. (2023) Identification and validation of biomarkers related to Th1 cell infiltration in neuropathic pain.; J Inflamm (Lond), 20: 19 |
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GSE149770 |
| Zhang, Xiao et al. (2024) An-Gong-Niu-Huang-Wan (AGNHW) regulates cerebral blood flow by improving hypoperfusion, cerebrovascular reactivity and microcirculation disturbances after stroke.; Chin Med, 19: 73 |
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GSE253928 |
| Zhang, Xiao et al. (2025) A catecholamine-independent pathway controlling adaptive adipocyte lipolysis.; Nat Metab, 8: 96-115 |
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GSE275147.2 GSE275147.3 GSE275147.1 |
| Zhang, Xiaodi et al. (2025) Lewy body dementia promotion by air pollutants.; Science, 389: eadu4132 |
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GSE297423 |
| Zhang, Xiaofang et al. (2025) The nucleocytoplasmic translocation of HINT1 regulates the maturation of cell density.; Life Sci Alliance, 8: [no pages] |
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GSE270956 |
| Zhang, Xiaohan et al. (2024) GlyT1 inhibition by ALX-5407 attenuates allograft rejection through suppression of Th1 cell differentiation.; Front Immunol, 16: 1644529 |
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GSE307193 |
| Zhang, Xiaoli et al. (2024) Translocator protein deficiency blocks the ferroptosis of malignant peripheral nerve sheath tumors through glutathione peroxidase 4.; Front Cell Neurosci, 19: 1624817 |
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GSE270880 |
| Zhang, Xiaoling et al. (2010) Similarities and differences between smoking-related gene expression in nasal and bronchial epithelium.; Physiol Genomics, 41: 1-8 |
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GSE16008 |
| Zhang, Xiaolong et al. (2023) GARP on hepatic stellate cells is essential for the development of liver fibrosis.; J Hepatol, 79: 1214-1225 |
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GSE226103 |
| Zhang, Xiaolu et al. (2023) Ribosomal dysregulation: A conserved pathophysiological mechanism in human depression and mouse chronic stress.; PNAS Nexus, 2: pgad299 |
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GSE229905 |
| Zhang, Xiaomei et al. (2013) A renewable tissue resource of phenotypically stable, biologically and ethnically diverse, patient-derived human breast cancer xenograft models.; Cancer Res, 73: 4885-97 |
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GSE46106 |
| Zhang, Xiaomin et al. (2011) Identification of New SRF Binding Sites in Genes Modulated by SRF Over-Expression in Mouse Hearts.; Gene Regul Syst Bio, 5: 41-59 |
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GSE19874 |
| Zhang, Xiaoming et al. (2022) Epigenetic regulation of innate immune memory in microglia.; J Neuroinflammation, 19: 111 |
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GSE175578.2 GSE175578.1 |
| Zhang, Xiaonan et al. (2014) Induction of mitochondrial dysfunction as a strategy for targeting tumour cells in metabolically compromised microenvironments.; Nat Commun, 5: 3295 |
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GSE53777 |
| Zhang, Xiaoru et al. (2023) Nickel-induced transcriptional memory in lung epithelial cells promotes interferon signaling upon nicotine exposure.; Toxicol Appl Pharmacol, 481: 116753 |
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GSE242791 |
| Zhang, Xiaoshen et al. (2024) RAC1 inhibition ameliorates IBSP-induced bone metastasis in lung adenocarcinoma.; Cell Rep, 43: 114528 |
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GSE225208 |
| Zhang, Xiaotan et al. (2024) Both partial inactivation as well as activation of NF-κB signaling lead to hypertension and chronic kidney disease.; Nephrol Dial Transplant, 39: 1993-2004 |
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GSE244099 |
| Zhang, Xin et al. (2009) IFN-beta1a inhibits the secretion of Th17-polarizing cytokines in human dendritic cells via TLR7 up-regulation.; J Immunol, 182: 3928-36 |
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GSE14386 |
| Zhang, Xingli et al. (2018) Macrophage/microglial Ezh2 facilitates autoimmune inflammation through inhibition of Socs3.; J Exp Med, 215: 1365-1382 |
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GSE101316 |
| Zhang, Xiong et al. (2025) Circadian regulator REV-ERBα is a master regulator of tumor lineage plasticity and an effective therapeutic target.; Proc Natl Acad Sci U S A, 122: e2513468122 |
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GSE295834.1 |
| Zhang, Xiujuan et al. (2022) Transcriptional Repression of Aerobic Glycolysis by OVOL2 in Breast Cancer.; Adv Sci (Weinh), 9: e2200705 |
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GSE189947 |
| Zhang, Xu et al. (2014) Iron deficiency modifies gene expression variation induced by augmented hypoxia sensing.; Blood Cells Mol Dis, 52: 35-45 |
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GSE40227 |
| Zhang, Xu et al. (2024) CHD2 Regulates Neuron-Glioma Interactions in Pediatric Glioma.; Cancer Discov, 14: 1732-1754 |
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GSE211074 |
| Zhang, Xuan et al. (2024) Cockayne Syndrome Linked to Elevated R-Loops Induced by Stalled RNA Polymerase II during Transcription Elongation.; Nat Commun, 15: 6031 |
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GSE226204.1 |
| Zhang, Xueling et al. (2025) Comparative Hippocampal Transcriptomics Reveals Model-Specific Pathways and Convergent Inflammation in Sepsis-Associated Encephalopathy.; Neuromolecular Med, 27: 75 |
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GSE226120 |
| Zhang, Xuying et al. (2023) Bulk and mosaic deletions ofEgfrreveal regionally defined gliogenesis in the developing mouse forebrain.; iScience, 26: 106242 |
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GSE205624 GSE214424 |
| Zhang, Y et al. (2012) Retinoic acid and tumor necrosis factor-? induced monocytic cell gene expression is regulated in part by induction of transcription factor MafB.; Exp Cell Res, 318: 2407-16 |
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GSE28995 |
| Zhang, Ya-Qi et al. (2025) Elevated NEGR1 in brain induces anxiety or depression-like phenotypes and synaptic dysfunction.; Mol Psychiatry, 30: 4627-4640 |
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GSE292811 |
| Zhang, Yafang et al. (2016) Transcriptomics of Environmental Enrichment Reveals a Role for Retinoic Acid Signaling in Addiction.; Front Mol Neurosci, 9: 119 |
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GSE88736 |
| Zhang, Yan-Qiong et al. (2018) Molecular mechanisms of the analgesic action of Wu-tou Decoction on neuropathic pain in mice revealed using microarray and network analysis.; Acta Pharmacol Sin, 39: 988-997 |
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GSE97076 |
| Zhang, Yandong et al. (2021) Transcription factor 4 controls positioning of cortical projection neurons through regulation of cell adhesion.; Mol Psychiatry, [no vol.]: [no pages] |
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GSE166412 |
| Zhang, Yang et al. (2021) Optimized RNA-targeting CRISPR/Cas13d technology outperforms shRNA in identifying functional circRNAs.; Genome Biol, 22: 41 |
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GSE162720 |
| Zhang, Yang et al. (2023) HDAC9-mediated epithelial cell cycle arrest in G2/M contributes to kidney fibrosis in male mice.; Nat Commun, 14: 3007 |
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GSE217176 |
| Zhang, Yanghai et al. (2023) Disruption of the nuclear localization signal in RBM20 is causative in dilated cardiomyopathy.; JCI Insight, 8: [no pages] |
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GSE212799 |
| Zhang, Yangyi et al. (2024) TRIB3 inhibition by palbociclib sensitizes prostate cancer to ferroptosis via downregulating SOX2/SLC7A11 expression.; Cell Death Discov, 10: 425 |
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GSE273622 |
| Zhang, Yanli et al. (2005) Transcriptional analysis of multiple brain regions in Parkinson's disease supports the involvement of specific protein processing, energy metabolism, and signaling pathways, and suggests novel disease mechanisms.; Am J Med Genet B Neuropsychiatr Genet, 137B: 5-16 |
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GSE20168 GSE20291 GSE20292 |
| Zhang, Yanli et al. (2022) miR-124 regulates early isolation-induced social abnormalities via inhibiting myelinogenesis in the medial prefrontal cortex.; Cell Mol Life Sci, 79: 507 |
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GSE162343 |
| Zhang, Yaohua et al. (2022) Hormonal therapies up-regulate MANF and overcome female susceptibility to immune checkpoint inhibitor myocarditis.; Sci Transl Med, 14: eabo1981 |
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GSE145573 |
| Zhang, Ye et al. (2014) An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.; J Neurosci, 34: 11929-47 |
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GSE52564 |
| Zhang, Ye et al. (2016) Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse.; Neuron, 89: 37-53 |
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GSE73721.1 GSE73721.2 |
| Zhang, Yi et al. (2009) The 76-gene signature defines high-risk patients that benefit from adjuvant tamoxifen therapy.; Breast Cancer Res Treat, 116: 303-9 |
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GSE12093 |
| Zhang, Yi et al. (2023) T-cell infiltration in the central nervous system and their association with brain calcification inSlc20a2-deficient mice.; Front Mol Neurosci, 16: 1073723 |
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GSE218335 |
| Zhang, Yi-Ci et al. (2026) Impaired adrenergic regulation of Kv channels underlies LC hyperactivity and early-onset sleep disruption in AD-like amyloidogenic mice.; Alzheimers Dement, 22: e71127 |
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GSE283155 |
| Zhang, Yinfeng et al. (2026) Chemoproteomic profiling reveals histone H4 dopaminylation inhibiting cell growth.; Nat Chem Biol, [no vol.]: [no pages] |
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GSE271162 |
| Zhang, Ying et al. (2012) USP44 regulates centrosome positioning to prevent aneuploidy and suppress tumorigenesis.; J Clin Invest, 122: 4362-74 |
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GSE40791 |
| Zhang, Ying et al. (2024) PRRC2B modulates oligodendrocyte progenitor cell development and myelination by stabilizing Sox2 mRNA.; Cell Rep, 43: 113930 |
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GSE222394 |
| Zhang, Yingjie et al. (2024) The enhancer module of Integrator controls cell identity and early neural fate commitment.; Nat Cell Biol, 27: 103-117 |
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GSE230917 |
| Zhang, Yinhua et al. (2017) Smaller Body Size, Early Postnatal Lethality, and Cortical Extracellular Matrix-Related Gene Expression Changes ofCyfip2-Null Embryonic Mice.; Front Mol Neurosci, 11: 482 |
|
GSE119570 |
| Zhang, Yining et al. (2023) Transcriptomic analyses reveal proinflammatory activation of human brain microvascular endothelial cells by aging-associated peptide medin and reversal by nanoliposomes.; Sci Rep, 13: 18802 |
|
GSE235915 |
| Zhang, Yiru et al. (2020) MET Inhibition Elicits PGC1α-Dependent Metabolic Reprogramming in Glioblastoma.; Cancer Res, 80: 30-43 |
|
GSE134676 |
| Zhang, Yong et al. (2018) Chronic Oxycodone Self-administration Altered Reward-related Genes in the Ventral and Dorsal Striatum of C57BL/6J Mice: An RNA-seq Analysis.; Neuroscience, 393: 333-349 |
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GSE113948 |
| Zhang, Yongchun et al. (2023) Epigenetic regulation of p63 blocks squamous-to-neuroendocrine transdifferentiation in esophageal development and malignancy.; bioRxiv, [no vol.]: [no pages] |
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GSE242439 |
| Zhang, Yongchun et al. (2024) Epigenetic regulation of p63 blocks squamous-to-neuroendocrine transdifferentiation in esophageal development and malignancy.; Sci Adv, 10: eadq0479 |
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GSE242463 GSE242438 |
| Zhang, Yongguang et al. (2023) MiR-9-1 controls osteoblastic regulation of lymphopoiesis.; Leukemia, 37: 2261-2275 |
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GSE239376 |
| Zhang, Yonghua et al. (2008) Response of the adipose tissue transcriptome to dihydrotestosterone in mice.; Physiol Genomics, 35: 254-61 |
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GSE9631 |
| Zhang, Youjia et al. (2022) TIPARP is involved in the regulation of intraocular pressure.; Commun Biol, 5: 1386 |
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GSE218153 |