Hierarchy For Package ubic.gemma.apps

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • ubic.gemma.cli.util.AbstractCLI (implements org.springframework.context.ApplicationContextAware, ubic.gemma.cli.util.CLI)
    • ubic.gemma.cli.util.AbstractAuthenticatedCLI (implements org.springframework.context.EnvironmentAware, org.springframework.beans.factory.InitializingBean)
      • ubic.gemma.cli.util.AbstractAutoSeekingCLI<T>
        • ubic.gemma.apps.ArrayDesignSequenceManipulatingCli
          • ubic.gemma.apps.AffyProbeCollapseCli
          • ubic.gemma.apps.ArrayDesignAnnotationFileCli
          • ubic.gemma.apps.ArrayDesignAuditTrailCleanupCli
          • ubic.gemma.apps.ArrayDesignBioSequenceDetachCli
          • ubic.gemma.apps.ArrayDesignBlatCli
          • ubic.gemma.apps.ArrayDesignMapSummaryCli
          • ubic.gemma.apps.ArrayDesignMergeCli
          • ubic.gemma.apps.ArrayDesignProbeCleanupCLI
          • ubic.gemma.apps.ArrayDesignProbeMapperCli
          • ubic.gemma.apps.ArrayDesignProbeRenamerCli
          • ubic.gemma.apps.ArrayDesignRepeatScanCli
          • ubic.gemma.apps.ArrayDesignSequenceAssociationCli
          • ubic.gemma.apps.ArrayDesignSubsumptionTesterCli
          • ubic.gemma.apps.BioSequenceCleanupCli
        • ubic.gemma.apps.ExpressionExperimentManipulatingCLI
          • ubic.gemma.apps.AffyDataFromCelCli
          • ubic.gemma.apps.BatchEffectPopulationCli
          • ubic.gemma.apps.DeleteDiffExCli
          • ubic.gemma.apps.DeleteExperimentsCli
          • ubic.gemma.apps.DetectQuantitationTypeCli
          • ubic.gemma.apps.DifferentialExpressionAnalysisCli
          • ubic.gemma.apps.ExperimentalDesignImportCli
          • ubic.gemma.apps.ExperimentalDesignWriterCLI
          • ubic.gemma.apps.ExpressionDataCorrMatCli
          • ubic.gemma.apps.ExpressionDataMatrixWriterCLI
          • ubic.gemma.apps.ExpressionExperimentDataFileGeneratorCli
          • ubic.gemma.apps.ExpressionExperimentDataUpdaterCli
          • ubic.gemma.apps.ExpressionExperimentMetadataChangelogEntryAdderCli
          • ubic.gemma.apps.ExpressionExperimentMetadataChangelogViewerCli
          • ubic.gemma.apps.ExpressionExperimentMetadataFileAdderCli
          • ubic.gemma.apps.ExpressionExperimentPlatformSwitchCli
          • ubic.gemma.apps.ExpressionExperimentPrimaryPubCli
          • ubic.gemma.apps.ExpressionExperimentVectorsManipulatingCli<T>
            • ubic.gemma.apps.ListQuantitationTypesCli
            • ubic.gemma.apps.ProcessedDataDeleterCli
            • ubic.gemma.apps.RawDataDeleterCli
            • ubic.gemma.apps.RawExpressionDataWriterCli
            • ubic.gemma.apps.SingleCellDataAggregateDeleterCli
            • ubic.gemma.apps.SingleCellDataAggregatorCli
            • ubic.gemma.apps.SingleCellDataDeleterCli
            • ubic.gemma.apps.SingleCellDataWriterCli
          • ubic.gemma.apps.GeeqCli
          • ubic.gemma.apps.LinkAnalysisCli
          • ubic.gemma.apps.LockExpressionDataFileCli
          • ubic.gemma.apps.MakeExperimentPrivateCli
          • ubic.gemma.apps.MakeExperimentsPublicCli
          • ubic.gemma.apps.OrderVectorsByDesignCli
          • ubic.gemma.apps.ProcessedDataComputeCLI
          • ubic.gemma.apps.RefreshExperimentCli
          • ubic.gemma.apps.ReplaceDataCli
          • ubic.gemma.apps.RNASeqBatchInfoCli
          • ubic.gemma.apps.RNASeqDataAddCli
          • ubic.gemma.apps.SingleCellDataLoaderCli
          • ubic.gemma.apps.SingleCellSparsityMetricsUpdaterCli
          • ubic.gemma.apps.SplitExperimentCli
          • ubic.gemma.apps.SVDCli
          • ubic.gemma.apps.VectorMergingCli
      • ubic.gemma.apps.ArrayDesignAlternativePopulateCli
      • ubic.gemma.apps.BibRefUpdaterCli
      • ubic.gemma.apps.BlacklistCli
      • ubic.gemma.apps.CompleteCli
      • ubic.gemma.apps.DatabaseViewGeneratorCLI
      • ubic.gemma.apps.ExperimentalDesignViewCli
      • ubic.gemma.apps.ExternalDatabaseAdderCli
      • ubic.gemma.apps.ExternalDatabaseOverviewCli
      • ubic.gemma.apps.ExternalDatabaseUpdaterCli
      • ubic.gemma.apps.ExternalFileGeneLoaderCLI
      • ubic.gemma.apps.FactorValueMigratorCLI
      • ubic.gemma.apps.FindObsoleteTermsCli
      • ubic.gemma.apps.FixOntologyTermLabelsCli
      • ubic.gemma.apps.GenericGenelistDesignGenerator
      • ubic.gemma.apps.GeoGrabberCli (implements org.springframework.beans.factory.InitializingBean)
      • ubic.gemma.apps.LoadExpressionDataCli
      • ubic.gemma.apps.LoadSimpleExpressionDataCli
      • ubic.gemma.apps.MultifunctionalityCli
      • ubic.gemma.apps.NCBIGene2GOAssociationLoaderCLI
      • ubic.gemma.apps.NcbiGeneLoaderCLI
      • ubic.gemma.apps.ProtocolAdderCli
      • ubic.gemma.apps.ProtocolDeleterCli
      • ubic.gemma.apps.ProtocolListCli
      • ubic.gemma.apps.PubMedLoaderCli
      • ubic.gemma.apps.PubMedSearcher
      • ubic.gemma.apps.TaxonLoaderCli
      • ubic.gemma.apps.UpdateEe2AdCli
      • ubic.gemma.apps.UpdateEE2CCli
      • ubic.gemma.apps.UpdateGene2CsCli
      • ubic.gemma.apps.UpdatePubMedCli
    • ubic.gemma.apps.GenerateDatabaseUpdateCli
    • ubic.gemma.apps.IndexGemmaCLI
    • ubic.gemma.apps.InitializeDatabaseCli
    • ubic.gemma.apps.ListExpressionDataFIleLocksCli
    • ubic.gemma.apps.MeshTermFetcherCli
    • ubic.gemma.apps.SingleCellDataDownloaderCli
    • ubic.gemma.apps.SingleCellDataTransformCli
    • ubic.gemma.apps.UnifiedOntologyUpdaterCli
    • ubic.gemma.apps.UpdateDatabaseCli